CX308908

Overview
NameCX308908
Unique NameCX308908
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length545
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX308908_ssr41 microsatellite CX308908_ssr41:41..52. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX308908 vs. ExPASy Swiss-Prot
Match: COB22_ARATH (Coatomer subunit beta'-2 OS=Arabidopsis thaliana GN=At1g52360 PE=2 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 2.160e-70
Identity = 125/132 (94.70%), Postives = 130/132 (98.48%), Query Frame = 3
Query:  147 MPLRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSSEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW 542
            MPLRLEIKRKLAQRSERVKSVDLHP+EPWILASLYSGT+CIWNYQ+Q MAKS EVTELPVRSAKFVARKQWVVAGADDM+IRVYNYNTMDKVKVFEAH+DYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW
Sbjct:    1 MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTLCIWNYQTQVMAKSFEVTELPVRSAKFVARKQWVVAGADDMYIRVYNYNTMDKVKVFEAHSDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW 132          
BLAST of CX308908 vs. ExPASy Swiss-Prot
Match: COB21_ARATH (Coatomer subunit beta'-1 OS=Arabidopsis thaliana GN=At1g79990 PE=2 SV=2)

HSP 1 Score: 263.077 bits (671), Expect = 6.283e-70
Identity = 122/133 (91.73%), Postives = 129/133 (96.99%), Query Frame = 3
Query:  147 MPLRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSSEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWM 545
            MPLRLEIKRK AQRSERVKSVDLHP+EPWILASLYSGT+CIWNYQ+QTM KS +VTELPVRSAKF+ARKQWVVAGADDMFIRVYNYNTMDK+KVFEAH DYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW+
Sbjct:    1 MPLRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWNYQTQTMVKSFDVTELPVRSAKFIARKQWVVAGADDMFIRVYNYNTMDKIKVFEAHADYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWL 133          
BLAST of CX308908 vs. ExPASy Swiss-Prot
Match: COB21_ORYSJ (Coatomer subunit beta'-1 OS=Oryza sativa subsp. japonica GN=Os06g0143900 PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 1.828e-69
Identity = 122/133 (91.73%), Postives = 130/133 (97.74%), Query Frame = 3
Query:  147 MPLRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSSEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWM 545
            MPLRLEIKRK AQRSERVKSVDLHP+EPWIL+SLYSG+VCIW+YQSQTM KS EV+ELPVRSAKF++RKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW+KGWM
Sbjct:    1 MPLRLEIKRKFAQRSERVKSVDLHPTEPWILSSLYSGSVCIWDYQSQTMVKSFEVSELPVRSAKFISRKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWDKGWM 133          
BLAST of CX308908 vs. ExPASy Swiss-Prot
Match: COB22_ORYSJ (Coatomer subunit beta'-2 OS=Oryza sativa subsp. japonica GN=Os02g0209100 PE=2 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 5.319e-69
Identity = 120/133 (90.23%), Postives = 130/133 (97.74%), Query Frame = 3
Query:  147 MPLRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSSEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWM 545
            MPLRL+IKRKLAQRSERVKSVDLHP+EPWIL+SLYSG+VCIWNYQ+QTM KS EVTELPVRS+KF+ARKQW+VAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPT P+VLSSSDDMLIKLWDW+KGWM
Sbjct:    1 MPLRLDIKRKLAQRSERVKSVDLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSSKFIARKQWIVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTQPFVLSSSDDMLIKLWDWDKGWM 133          
BLAST of CX308908 vs. ExPASy Swiss-Prot
Match: COB23_ARATH (Coatomer subunit beta'-3 OS=Arabidopsis thaliana GN=At3g15980 PE=2 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 2.640e-68
Identity = 120/132 (90.91%), Postives = 127/132 (96.21%), Query Frame = 3
Query:  147 MPLRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSSEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW 542
            MPLRL+IKRK AQRSERVKSVDLHP+EPWILASLYSGTVCIWNYQ+QT+ KS EVTELPVRSAKF+ RKQWVVAGADDM+IRVYNYNTMDKVKVFEAH+DYIRCVAVHPTLPYVLSSSDDMLIKLWDWE GW
Sbjct:    1 MPLRLDIKRKFAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQTQTITKSFEVTELPVRSAKFIPRKQWVVAGADDMYIRVYNYNTMDKVKVFEAHSDYIRCVAVHPTLPYVLSSSDDMLIKLWDWENGW 132          
BLAST of CX308908 vs. ExPASy Swiss-Prot
Match: COB23_ORYSJ (Putative coatomer subunit beta'-3 OS=Oryza sativa subsp. japonica GN=Os02g0209000 PE=3 SV=2)

HSP 1 Score: 257.299 bits (656), Expect = 3.448e-68
Identity = 119/133 (89.47%), Postives = 128/133 (96.24%), Query Frame = 3
Query:  147 MPLRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSSEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWM 545
            MPLRL+IKRKLAQRSER KSVDLHP+EPWIL+SLYSG+VCIWNYQ+QTM KS EVTELPVRS+KF+ RKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPT P+VLSSSDDMLIKLWDW+KGWM
Sbjct:    1 MPLRLDIKRKLAQRSERAKSVDLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSSKFITRKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTQPFVLSSSDDMLIKLWDWDKGWM 133          
BLAST of CX308908 vs. ExPASy Swiss-Prot
Match: COPB2_PONAB (Coatomer subunit beta' OS=Pongo abelii GN=COPB2 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 2.738e-57
Identity = 96/132 (72.73%), Postives = 121/132 (91.67%), Query Frame = 3
Query:  147 MPLRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSSEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW 542
            MPLRL+IKRKL  RS+RVKSVDLHP+EPW+LASLY+G+VC+WN+++QT+ K+ EV +LPVR+AKFVARK WVV GADDM IRV+NYNT+++V +FEAH+DYIRC+AVHPT P++L+SSDDMLIKLWDW+K W
Sbjct:    1 MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPVRAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDDMLIKLWDWDKKW 132          
BLAST of CX308908 vs. ExPASy Swiss-Prot
Match: COPB2_MOUSE (Coatomer subunit beta' OS=Mus musculus GN=Copb2 PE=2 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 2.738e-57
Identity = 96/132 (72.73%), Postives = 121/132 (91.67%), Query Frame = 3
Query:  147 MPLRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSSEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW 542
            MPLRL+IKRKL  RS+RVKSVDLHP+EPW+LASLY+G+VC+WN+++QT+ K+ EV +LPVR+AKFVARK WVV GADDM IRV+NYNT+++V +FEAH+DYIRC+AVHPT P++L+SSDDMLIKLWDW+K W
Sbjct:    1 MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPVRAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDDMLIKLWDWDKKW 132          
BLAST of CX308908 vs. ExPASy Swiss-Prot
Match: COPB2_MACFA (Coatomer subunit beta' OS=Macaca fascicularis GN=COPB2 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 2.738e-57
Identity = 96/132 (72.73%), Postives = 121/132 (91.67%), Query Frame = 3
Query:  147 MPLRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSSEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW 542
            MPLRL+IKRKL  RS+RVKSVDLHP+EPW+LASLY+G+VC+WN+++QT+ K+ EV +LPVR+AKFVARK WVV GADDM IRV+NYNT+++V +FEAH+DYIRC+AVHPT P++L+SSDDMLIKLWDW+K W
Sbjct:    1 MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPVRAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDDMLIKLWDWDKKW 132          
BLAST of CX308908 vs. ExPASy Swiss-Prot
Match: COPB2_HUMAN (Coatomer subunit beta' OS=Homo sapiens GN=COPB2 PE=1 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 2.738e-57
Identity = 96/132 (72.73%), Postives = 121/132 (91.67%), Query Frame = 3
Query:  147 MPLRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSSEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW 542
            MPLRL+IKRKL  RS+RVKSVDLHP+EPW+LASLY+G+VC+WN+++QT+ K+ EV +LPVR+AKFVARK WVV GADDM IRV+NYNT+++V +FEAH+DYIRC+AVHPT P++L+SSDDMLIKLWDW+K W
Sbjct:    1 MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPVRAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDDMLIKLWDWDKKW 132          
The following BLAST results are available for this feature:
BLAST of CX308908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
COB22_ARATH2.160e-7094.70Coatomer subunit beta'-2 OS=Arabidopsis thaliana G... [more]
COB21_ARATH6.283e-7091.73Coatomer subunit beta'-1 OS=Arabidopsis thaliana G... [more]
COB21_ORYSJ1.828e-6991.73Coatomer subunit beta'-1 OS=Oryza sativa subsp. ja... [more]
COB22_ORYSJ5.319e-6990.23Coatomer subunit beta'-2 OS=Oryza sativa subsp. ja... [more]
COB23_ARATH2.640e-6890.91Coatomer subunit beta'-3 OS=Arabidopsis thaliana G... [more]
COB23_ORYSJ3.448e-6889.47Putative coatomer subunit beta'-3 OS=Oryza sativa ... [more]
COPB2_PONAB2.738e-5772.73Coatomer subunit beta' OS=Pongo abelii GN=COPB2 PE... [more]
COPB2_MOUSE2.738e-5772.73Coatomer subunit beta' OS=Mus musculus GN=Copb2 PE... [more]
COPB2_MACFA2.738e-5772.73Coatomer subunit beta' OS=Macaca fascicularis GN=C... [more]
COPB2_HUMAN2.738e-5772.73Coatomer subunit beta' OS=Homo sapiens GN=COPB2 PE... [more]

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Properties
Property NameValue
Genbank descriptionC21005E05Rv AbsLeaSub1 Citrus clementina cDNA clone C21005E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308908 ID=CX308908; Name=CX308908; organism=Citrus clementina; type=EST; length=545bp
GCGGGGGCTCCTCATTTTTACAGATACATCACAACGCTAATCCCTCCCTC
CCTCTCTCTATTACACCAAATTCTCTCTCTGGATCTATAATTTACAACTT
CGCCGCGAAAACTTTGATCTCGATTTCGCAAATCAGATAATCGAAGATGC
CTCTCAGACTCGAAATCAAGAGAAAACTTGCTCAAAGATCAGAGAGAGTA
AAGTCTGTGGATTTGCATCCATCTGAACCATGGATTCTAGCAAGTTTGTA
TTCAGGAACTGTGTGTATCTGGAACTACCAGTCACAGACTATGGCTAAGT
CTTCTGAGGTCACTGAGTTACCAGTTAGATCAGCTAAATTTGTGGCCCGC
AAGCAATGGGTAGTTGCAGGAGCTGATGACATGTTTATTCGTGTATACAA
TTACAATACAATGGACAAAGTTAAAGTATTTGAGGCTCATACGGATTACA
TTAGATGTGTGGCTGTTCATCCTACCCTTCCGTATGTGCTGTCATCATCT
GATGATATGCTCATAAAGCTTTGGGATTGGGAGAAGGGTTGGATG
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