CX308936

Overview
NameCX308936
Unique NameCX308936
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length415
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308936 vs. ExPASy Swiss-Prot
Match: SERC_ARATH (Phosphoserine aminotransferase, chloroplastic OS=Arabidopsis thaliana GN=At4g35630 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.344e-19
Identity = 45/49 (91.84%), Postives = 47/49 (95.92%), Query Frame = -2
Query:  253 VKEATKEKMVQLKGHRSVGGLRASIYNAMPLAGVEKLVPFMKDFQAKHA 399
            +KEA KEKMVQLKGHRSVGG+RASIYNAMPLAGVEKLV FMKDFQAKHA
Sbjct:  382 IKEAAKEKMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKHA 430          
BLAST of CX308936 vs. ExPASy Swiss-Prot
Match: SERC_SPIOL (Phosphoserine aminotransferase, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.829e-18
Identity = 43/49 (87.76%), Postives = 46/49 (93.88%), Query Frame = -2
Query:  253 VKEATKEKMVQLKGHRSVGGLRASIYNAMPLAGVEKLVPFMKDFQAKHA 399
            +KEA KEKMV LKGHRSVGG+RASIYNAMPLAGVEKLV FMK+FQAKHA
Sbjct:  382 IKEAAKEKMVALKGHRSVGGMRASIYNAMPLAGVEKLVAFMKEFQAKHA 430          
BLAST of CX308936 vs. ExPASy Swiss-Prot
Match: SERC_NITEU (Phosphoserine aminotransferase OS=Nitrosomonas europaea GN=serC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.172e-12
Identity = 31/49 (63.27%), Postives = 40/49 (81.63%), Query Frame = -2
Query:  253 VKEATKEKMVQLKGHRSVGGLRASIYNAMPLAGVEKLVPFMKDFQAKHA 399
            +K+A    ++QLKGHRSVGG+RASIYNAMPL GV+ LV FM++F+  HA
Sbjct:  320 LKQAQAHGLIQLKGHRSVGGMRASIYNAMPLEGVQTLVTFMREFEKNHA 368          
BLAST of CX308936 vs. ExPASy Swiss-Prot
Match: SERC_POLSJ (Phosphoserine aminotransferase OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=serC PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.505e-11
Identity = 29/46 (63.04%), Postives = 39/46 (84.78%), Query Frame = -2
Query:  253 ATKEKMVQLKGHRSVGGLRASIYNAMPLAGVEKLVPFMKDFQAKHA 390
            A    ++QLKGH+SVGG+RASIYNAMPLAG+E L+ +M++F+ KHA
Sbjct:  323 AKAHSLLQLKGHKSVGGMRASIYNAMPLAGIEALIGYMREFEQKHA 368          
BLAST of CX308936 vs. ExPASy Swiss-Prot
Match: SERC_JANMA (Phosphoserine aminotransferase OS=Janthinobacterium sp. (strain Marseille) GN=serC PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.505e-11
Identity = 31/48 (64.58%), Postives = 39/48 (81.25%), Query Frame = -2
Query:  256 VKEATKEKMVQLKGHRSVGGLRASIYNAMPLAGVEKLVPFMKDFQAKH 399
            + EA  + +VQLKGH SVGG+RASIYNAMP+ GV+ LV FMKDF+ K+
Sbjct:  315 ITEADAQGLVQLKGHSSVGGMRASIYNAMPIEGVQALVAFMKDFEKKY 362          
BLAST of CX308936 vs. ExPASy Swiss-Prot
Match: SERC_SHEWM (Phosphoserine aminotransferase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=serC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.965e-11
Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = -2
Query:  256 VKEATKEKMVQLKGHRSVGGLRASIYNAMPLAGVEKLVPFMKDFQAKH 399
            +K+A    +V LKGHRSVGG+RASIYNAMPL GVEKLV FM DF  K+
Sbjct:  315 IKQAKAVGLVALKGHRSVGGMRASIYNAMPLEGVEKLVEFMTDFANKN 362          
BLAST of CX308936 vs. ExPASy Swiss-Prot
Match: SERC_SHESH (Phosphoserine aminotransferase OS=Shewanella sediminis (strain HAW-EB3) GN=serC PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.567e-11
Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = -2
Query:  256 EATKEKMVQLKGHRSVGGLRASIYNAMPLAGVEKLVPFMKDFQAKH 393
            EA++  +V LKGHRSVGG+RASIYNAMP+ GVEKLV FMK F  K+
Sbjct:  317 EASRAGLVALKGHRSVGGMRASIYNAMPIEGVEKLVEFMKGFAEKN 362          
BLAST of CX308936 vs. ExPASy Swiss-Prot
Match: SERC_SHEHH (Phosphoserine aminotransferase OS=Shewanella halifaxensis (strain HAW-EB4) GN=serC PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.567e-11
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = -2
Query:  253 SRCVKEATKEKMVQLKGHRSVGGLRASIYNAMPLAGVEKLVPFMKDFQAKHA 408
            S+ ++EA    +V LKGHRSVGG+RASIYNAMPL GV+ LV FM+ F AKH+
Sbjct:  312 SQFLEEAQVAGLVALKGHRSVGGMRASIYNAMPLEGVDTLVEFMQAFAAKHS 363          
BLAST of CX308936 vs. ExPASy Swiss-Prot
Match: SERC_PROMH (Phosphoserine aminotransferase OS=Proteus mirabilis (strain HI4320) GN=serC PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.567e-11
Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = -2
Query:  253 VKEATKEKMVQLKGHRSVGGLRASIYNAMPLAGVEKLVPFMKDFQAKHA 399
            +KEA ++ +V LKGHR  GG+RASIYNAMP AGV+ LV FM DF+ +HA
Sbjct:  314 LKEAEEQGLVALKGHRVSGGMRASIYNAMPFAGVQALVDFMADFERRHA 362          
BLAST of CX308936 vs. ExPASy Swiss-Prot
Match: SERC_POLNA (Phosphoserine aminotransferase OS=Polaromonas naphthalenivorans (strain CJ2) GN=serC PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.352e-11
Identity = 29/41 (70.73%), Postives = 38/41 (92.68%), Query Frame = -2
Query:  253 MVQLKGHRSVGGLRASIYNAMPLAGVEKLVPFMKDFQAKHA 375
            ++QLKGH+SVGG+RASIYNAMPLAGVE LV ++++F+ KHA
Sbjct:  328 LLQLKGHKSVGGMRASIYNAMPLAGVEALVSYLQEFEQKHA 368          
The following BLAST results are available for this feature:
BLAST of CX308936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
SERC_ARATH3.344e-1991.84Phosphoserine aminotransferase, chloroplastic OS=A... [more]
SERC_SPIOL4.829e-1887.76Phosphoserine aminotransferase, chloroplastic OS=S... [more]
SERC_NITEU5.172e-1263.27Phosphoserine aminotransferase OS=Nitrosomonas eur... [more]
SERC_POLSJ1.505e-1163.04Phosphoserine aminotransferase OS=Polaromonas sp. ... [more]
SERC_JANMA1.505e-1164.58Phosphoserine aminotransferase OS=Janthinobacteriu... [more]
SERC_SHEWM1.965e-1168.75Phosphoserine aminotransferase OS=Shewanella woody... [more]
SERC_SHESH2.567e-1169.57Phosphoserine aminotransferase OS=Shewanella sedim... [more]
SERC_SHEHH2.567e-1163.46Phosphoserine aminotransferase OS=Shewanella halif... [more]
SERC_PROMH2.567e-1163.27Phosphoserine aminotransferase OS=Proteus mirabili... [more]
SERC_POLNA3.352e-1170.73Phosphoserine aminotransferase OS=Polaromonas naph... [more]

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Properties
Property NameValue
Genbank descriptionC21006B02Rv AbsLeaSub1 Citrus clementina cDNA clone C21006B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308936 ID=CX308936; Name=CX308936; organism=Citrus clementina; type=EST; length=415bp
CACTTCTGTTTTTTTTTTTTTTTTTTAGAGAAATATCAGCATTATTGATT
CAGCCAAATTATTCTCAATTATTTTGAATAAGAACGTAGCCTGAAAAATA
CTCAAATACCATACCACGGTAAAAAGCGACTGAAACACTCAATGAGACGG
ACAAGAGAAAAAGCTAAATCCTACATATTTTTCTACTAAAAAAAGGACTC
TGGATTCAAGCCACAGGCAAAGCCAATCAACAACACTAAAGAGAGAAAGT
CAAGCATGCTTTGCCTGGAAATCCTTCATGAAAGGAACCAACTTCTCAAC
GCCTGCCAAAGGCATAGCATTATATATTGAAGCCCTCAATCCTCCAACTG
ACCTATGCCCCTTCAATTGGACCATCTTCTCCTTAGTAGCTTCCTTCACA
CACCGCGAACCTCGG
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