CX308939

Overview
NameCX308939
Unique NameCX308939
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length260
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1766 contig Ccv1_Contig1766:140..399. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308939 vs. ExPASy Swiss-Prot
Match: UPTG_PEA (Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Pisum sativum GN=UPTG PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.979e-23
Identity = 49/60 (81.67%), Postives = 53/60 (88.33%), Query Frame = -1
Query:    3 AAMPRGIPSLKDELGIVIPTIRNLDFLEMWRPFFEPYHLIIVQDGDPSKTINVPDGFDYE 182
            A++P+  P LKDEL IVIPTIRNLDFLEMWRPFFE YHLIIVQDGDPSK I VP+GFDYE
Sbjct:    2 ASLPKPTPLLKDELDIVIPTIRNLDFLEMWRPFFEQYHLIIVQDGDPSKVIKVPEGFDYE 61          
BLAST of CX308939 vs. ExPASy Swiss-Prot
Match: UPTG2_SOLTU (Alpha-1,4-glucan-protein synthase [UDP-forming] 2 OS=Solanum tuberosum GN=UPTG2 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.635e-23
Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = -1
Query:    3 PSLKDELGIVIPTIRNLDFLEMWRPFFEPYHLIIVQDGDPSKTINVPDGFDYE 161
            P LKDEL IVIPTIRNLDFLEMWRPFF+PYHLIIVQDGDPSK INVP+GFDYE
Sbjct:   10 PLLKDELDIVIPTIRNLDFLEMWRPFFQPYHLIIVQDGDPSKIINVPEGFDYE 62          
BLAST of CX308939 vs. ExPASy Swiss-Prot
Match: UPTG1_SOLTU (Alpha-1,4-glucan-protein synthase [UDP-forming] 1 OS=Solanum tuberosum GN=UPTG1 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 1.931e-22
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = -1
Query:    3 MPRGIPSLKDELGIVIPTIRNLDFLEMWRPFFEPYHLIIVQDGDPSKTINVPDGFDYE 176
            M    P LKDEL IVIPTIRNLDFLEMWRPFF+PYHLIIVQDGDPSK I VP+GFDYE
Sbjct:    1 MAAATPLLKDELDIVIPTIRNLDFLEMWRPFFQPYHLIIVQDGDPSKIIKVPEGFDYE 58          
BLAST of CX308939 vs. ExPASy Swiss-Prot
Match: UPTG_MAIZE (Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Zea mays GN=UPTG PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.251e-21
Identity = 46/53 (86.79%), Postives = 49/53 (92.45%), Query Frame = -1
Query:    3 PSLKDELGIVIPTIRNLDFLEMWRPFFEPYHLIIVQDGDPSKTINVPDGFDYE 161
            P LKDEL IVIPTIRNLDFLEMWR FF+PYHLIIVQDGDP+KTI VP+GFDYE
Sbjct:   16 PLLKDELDIVIPTIRNLDFLEMWRAFFQPYHLIIVQDGDPTKTIKVPEGFDYE 68          
The following BLAST results are available for this feature:
BLAST of CX308939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
UPTG_PEA2.979e-2381.67Alpha-1,4-glucan-protein synthase [UDP-forming] OS... [more]
UPTG2_SOLTU6.635e-2390.57Alpha-1,4-glucan-protein synthase [UDP-forming] 2 ... [more]
UPTG1_SOLTU1.931e-2282.76Alpha-1,4-glucan-protein synthase [UDP-forming] 1 ... [more]
UPTG_MAIZE1.251e-2186.79Alpha-1,4-glucan-protein synthase [UDP-forming] OS... [more]
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Properties
Property NameValue
Genbank descriptionC21006B08Rv AbsLeaSub1 Citrus clementina cDNA clone C21006B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308939 ID=CX308939; Name=CX308939; organism=Citrus clementina; type=EST; length=260bp
AACTCATAGTCAAAACCATCAGGAACATTGATGGTCTTAGAAGGATCACC
ATCTTGAACAATGATCAAATGATAAGGCTCAAAAAAGGGCCTCCACATCT
CCAAGAAATCAAGATTCCTGATGGTGGGTATCACAATACCAAGCTCATCT
TTCAACGAAGGGATTCCCCTTGGCATTGCTGCTGTTTCTTCCGGAGTTGC
ATTCTCTGTTACTTTTTTGTAATCCATTGCTGCTGTTTCAAAAGACCTGA
GACTCTCCCG
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