CX308943

Overview
NameCX308943
Unique NameCX308943
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length652
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig965 contig Ccv1_Contig965:1..652. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308943 vs. ExPASy Swiss-Prot
Match: FAD3C_SESIN (Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1)

HSP 1 Score: 400.979 bits (1029), Expect = 2.805e-111
Identity = 182/212 (85.85%), Postives = 196/212 (92.45%), Query Frame = 3
Query:    6 ATRFLRFKIPFPLLAYPFYLWSRSPGKSGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKDHYVSDNGDVVYYQTDPQLNGS 641
            AT+ LRF +PFPLLAYP YLWSRSPGK GSHF P+SDLFVP+E+KDVITSTVCWTAM ALLVGLSFV+GP+QLLKLYG+PY   VMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGW NNIHHDIGTHVIHHLFPQIPHYHLIEATEAA+PVLGKYYREPKKS P+PF+L GDL RS+ +DHYVSD GDVVYYQTDPQL G+
Sbjct:  233 ATKKLRFTLPFPLLAYPIYLWSRSPGKQGSHFHPDSDLFVPNEKKDVITSTVCWTAMLALLVGLSFVIGPVQLLKLYGIPYLGNVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEAAKPVLGKYYREPKKSAPLPFHLLGDLTRSLKRDHYVSDVGDVVYYQTDPQLTGA 444          
BLAST of CX308943 vs. ExPASy Swiss-Prot
Match: FAD3C_RICCO (Omega-3 fatty acid desaturase, chloroplastic OS=Ricinus communis GN=FAD7A-1 PE=2 SV=1)

HSP 1 Score: 397.512 bits (1020), Expect = 3.101e-110
Identity = 174/210 (82.86%), Postives = 192/210 (91.43%), Query Frame = 3
Query:    9 TRFLRFKIPFPLLAYPFYLWSRSPGKSGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKDHYVSDNGDVVYYQTDPQLNG 638
            T+ LRF +PFP+LAYPFYLWSRSPGK GSHF P+S LFVP ERKD+ITST CWTAMAALLV L+F MGP+Q+LKLYG+PYWIFVMWLD VTYLHHHGHEDKLPWYRGK WSYLRGGLTTLDRDYGW NNIHHDIGTHVIHHLFPQIPHYHL+EATEAA+PV+GKYYREPKKSGP+P +L G L+RSM +DHYVSD GDVVYYQ DP+L+G
Sbjct:  244 TKTLRFSLPFPMLAYPFYLWSRSPGKKGSHFHPDSGLFVPKERKDIITSTACWTAMAALLVYLNFSMGPVQMLKLYGIPYWIFVMWLDFVTYLHHHGHEDKLPWYRGKAWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVMGKYYREPKKSGPLPLHLLGSLVRSMKEDHYVSDTGDVVYYQKDPKLSG 453          
BLAST of CX308943 vs. ExPASy Swiss-Prot
Match: FAD3D_ARATH (Temperature-sensitive omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD8 PE=2 SV=1)

HSP 1 Score: 395.971 bits (1016), Expect = 9.023e-110
Identity = 171/210 (81.43%), Postives = 193/210 (91.90%), Query Frame = 3
Query:    9 TRFLRFKIPFPLLAYPFYLWSRSPGKSGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKDHYVSDNGDVVYYQTDPQLNG 638
            T+  RF +PFP+LAYPFYLW+RSPGK GSH+ P+SDLF+P E+KDV+TST CWTAMAALLV L+FVMGP+Q+LKLYG+PYWIFVMWLD VTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGW NNIHHDIGTHVIHHLFPQIPHYHL+EATEAA+PVLGKYYREPK SGP+P +L G LI+SM +DH+VSD GDVVYY+ DP+LNG
Sbjct:  223 TQMFRFTLPFPMLAYPFYLWNRSPGKQGSHYHPDSDLFLPKEKKDVLTSTACWTAMAALLVCLNFVMGPIQMLKLYGIPYWIFVMWLDFVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYREPKNSGPLPLHLLGSLIKSMKQDHFVSDTGDVVYYEADPKLNG 432          
BLAST of CX308943 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1)

HSP 1 Score: 390.193 bits (1001), Expect = 4.951e-108
Identity = 177/213 (83.10%), Postives = 193/213 (90.61%), Query Frame = 3
Query:    9 TRFLRFKIPFPLLAYPFYLWSRSPGKSGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKS-GPIPFNLFGDLIRSMSKDHYVSDNGDVVYYQTDPQLNGSS 644
            TR LRF  PFPLLA+P YL+SRSPGK+GSHFDP+SDLFVP+ERKDVITST CW AM  LLVGL FVMGP+QLLKLYG+PY IFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGW NNIHHDIGTHVIHHLFPQIPHYHL+EATEAA+PV GKYYREPKKS  P+PF+L G++IRS   DH+VSD GDVVYYQTD ++NGSS
Sbjct:  238 TRMLRFTAPFPLLAFPVYLFSRSPGKTGSHFDPSSDLFVPNERKDVITSTACWAAMLGLLVGLGFVMGPIQLLKLYGVPYVIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVFGKYYREPKKSAAPLPFHLIGEIIRSFKTDHFVSDTGDVVYYQTDSKINGSS 450          
BLAST of CX308943 vs. ExPASy Swiss-Prot
Match: FAD3C_BRANA (Omega-3 fatty acid desaturase, chloroplastic (Fragment) OS=Brassica napus GN=FAD7 PE=2 SV=1)

HSP 1 Score: 372.859 bits (956), Expect = 8.180e-103
Identity = 165/210 (78.57%), Postives = 184/210 (87.62%), Query Frame = 3
Query:    9 TRFLRFKIPFPLLAYPFYLWSRSPGKSGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKDHYVSDNGDVVYYQTDPQLNG 638
            TRF RF +P  +LAYPFYLW+RSPGK GSH+ P+SDLF+P ER DV+TST CWTAMA LLV L+FVMGPMQ+LKLY +PYWI VMWLD VTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYG  NNIHHDIGTHVIHHLFPQIPHYHL+EATEAA+PVLGKYYREP KSGP+P +L G L +S+ +DH+VSD GDVVYY+ DP L G
Sbjct:  188 TRFFRFTLPLVMLAYPFYLWARSPGKKGSHYHPDSDLFLPKERNDVLTSTACWTAMAVLLVCLNFVMGPMQMLKLYVIPYWINVMWLDFVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGLINNIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYREPDKSGPLPLHLLGILAKSIKEDHFVSDEGDVVYYEADPNLYG 397          
BLAST of CX308943 vs. ExPASy Swiss-Prot
Match: FAD3C_ARATH (Omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD7 PE=1 SV=1)

HSP 1 Score: 371.703 bits (953), Expect = 1.822e-102
Identity = 164/210 (78.10%), Postives = 185/210 (88.10%), Query Frame = 3
Query:    9 TRFLRFKIPFPLLAYPFYLWSRSPGKSGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKDHYVSDNGDVVYYQTDPQLNG 638
            TRF RF +P  +LAYPFYLW+RSPGK GSH+ P+SDLF+P ERKDV+TST CWTAMAALLV L+F +GP+Q+LKLYG+PYWI VMWLD VTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYG  NNIHHDIGTHVIHHLFPQIPHYHL+EATEAA+PVLGKYYREP KSGP+P +L   L +S+ +DHYVSD G+VVYY+ DP L G
Sbjct:  230 TRFFRFTLPLVMLAYPFYLWARSPGKKGSHYHPDSDLFLPKERKDVLTSTACWTAMAALLVCLNFTIGPIQMLKLYGIPYWINVMWLDFVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGLINNIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYREPDKSGPLPLHLLEILAKSIKEDHYVSDEGEVVYYKADPNLYG 439          
BLAST of CX308943 vs. ExPASy Swiss-Prot
Match: FAD3E_TOBAC (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3 PE=2 SV=1)

HSP 1 Score: 360.147 bits (923), Expect = 5.487e-99
Identity = 162/209 (77.51%), Postives = 183/209 (87.56%), Query Frame = 3
Query:    6 ATRFLRFKIPFPLLAYPFYLWSRSPGKSGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKDHYVSDNGDVVYYQTDPQL 632
            +T+FLR+KIPFPLLAYP YL  RSPGKSGSHF+P SDLF P ERK V+TST+CWT MAALL+ L    G +Q+ K+YG PY IFVMWLD VTYLHHHG+E KLPWYRGKEWSYLRGGLTT+DRDYG FNNIHHDIGTHVIHHLFPQIPHYHL EAT+AA+PVLGKYYREPKKSGPIPF+L  DL RSM +DHYVSD+G++V+YQTDP +
Sbjct:  163 STKFLRYKIPFPLLAYPMYLMKRSPGKSGSHFNPYSDLFQPHERKYVVTSTLCWTVMAALLLYLCTAFGSLQMFKIYGAPYLIFVMWLDFVTYLHHHGYEKKLPWYRGKEWSYLRGGLTTVDRDYGLFNNIHHDIGTHVIHHLFPQIPHYHLREATKAAKPVLGKYYREPKKSGPIPFHLVKDLTRSMKQDHYVSDSGEIVFYQTDPHI 371          
BLAST of CX308943 vs. ExPASy Swiss-Prot
Match: FAD3E_PHAAU (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Phaseolus aureus GN=ARG1 PE=2 SV=1)

HSP 1 Score: 348.977 bits (894), Expect = 1.265e-95
Identity = 150/212 (70.75%), Postives = 184/212 (86.79%), Query Frame = 3
Query:    9 TRFLRFKIPFPLLAYPFYLWSRSPGKSGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKDHYVSDNGDVVYYQTDPQLNGSS 644
            TR LR+  PFP+ AYPFYLW+RSPGK GSHF+P S+LF P ERK V+TST+CW  + ++L+ LS  +GP+ +LKLYG+PY IFVMWLD VTYLHHHG+  KLPWYRG+EWSYLRGGLTT+DRDYGW NN+HHDIGTHVIHHLFPQIPHYHL+EAT++A+ VLGKYYREP+KSGP+PF+L   L++S+S+DH+VSD GD+VYYQTDP+L+  S
Sbjct:  164 TRMLRYSFPFPIFAYPFYLWNRSPGKEGSHFNPYSNLFSPGERKGVVTSTLCWGIVLSVLLYLSLTIGPIFMLKLYGVPYLIFVMWLDFVTYLHHHGYTHKLPWYRGQEWSYLRGGLTTVDRDYGWINNVHHDIGTHVIHHLFPQIPHYHLVEATKSAKSVLGKYYREPQKSGPLPFHLLKYLLQSISQDHFVSDTGDIVYYQTDPKLHQDS 375          
BLAST of CX308943 vs. ExPASy Swiss-Prot
Match: FAD3E_SOYBN (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Glycine max GN=FAD3 PE=2 SV=1)

HSP 1 Score: 348.206 bits (892), Expect = 2.158e-95
Identity = 152/208 (73.08%), Postives = 176/208 (84.62%), Query Frame = 3
Query:    9 TRFLRFKIPFPLLAYPFYLWSRSPGKSGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKDHYVSDNGDVVYYQTDPQL 632
            TR +RF +PFPL  YP YL+SRSPGK GSHF+P S+LF PSERK +  ST+CW  M +LL+ LSF+  P+ +LKLYG+PYWIFVMWLD VTYLHHHGH  KLPWYRGKEWSYLRGGLTT+DRDYGW  NIHHDIGTHVIHHLFPQIPHYHL+EAT+AA+PVLG YYREP++S P+PF+L   LI+SM +DH+VSD GDVVYYQTD  L
Sbjct:  167 TRLIRFTVPFPLFVYPIYLFSRSPGKEGSHFNPYSNLFPPSERKGIAISTLCWATMFSLLIYLSFITSPLLVLKLYGIPYWIFVMWLDFVTYLHHHGHHQKLPWYRGKEWSYLRGGLTTVDRDYGWIYNIHHDIGTHVIHHLFPQIPHYHLVEATQAAKPVLGDYYREPERSAPLPFHLIKYLIQSMRQDHFVSDTGDVVYYQTDSLL 374          
BLAST of CX308943 vs. ExPASy Swiss-Prot
Match: FAD3E_BRANA (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Brassica napus GN=FAD3 PE=2 SV=1)

HSP 1 Score: 341.273 bits (874), Expect = 2.637e-93
Identity = 150/209 (71.77%), Postives = 176/209 (84.21%), Query Frame = 3
Query:    6 ATRFLRFKIPFPLLAYPFYLWSRSPGKSGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKDHYVSDNGDVVYYQTDPQL 632
            +TR LR+ +P P+LAYP YLW RSPGK GSHF+P S LF PSERK + TST CW+ M A LV LSF++ P+ +LK+YG+PY IFVMWLD VTYLHHHGH++KLPWYRGKEWSYLRGGLTT+DRDYG FNNIHHDIGTHVIHHLFPQIPHYHL++AT AA+ VLG+YYREPK SG IP +L   L+ S+ KDHYVSD GD+V+Y+TDP L
Sbjct:  164 STRMLRYTVPLPMLAYPIYLWYRSPGKEGSHFNPYSSLFAPSERKLIATSTTCWSIMLATLVYLSFLVDPVTVLKVYGVPYIIFVMWLDAVTYLHHHGHDEKLPWYRGKEWSYLRGGLTTIDRDYGIFNNIHHDIGTHVIHHLFPQIPHYHLVDATRAAKHVLGRYYREPKTSGAIPIHLVESLVASIKKDHYVSDTGDIVFYETDPDL 372          
The following BLAST results are available for this feature:
BLAST of CX308943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
FAD3C_SESIN2.805e-11185.85Omega-3 fatty acid desaturase, chloroplastic OS=Se... [more]
FAD3C_RICCO3.101e-11082.86Omega-3 fatty acid desaturase, chloroplastic OS=Ri... [more]
FAD3D_ARATH9.023e-11081.43Temperature-sensitive omega-3 fatty acid desaturas... [more]
FAD3C_SOYBN4.951e-10883.10Omega-3 fatty acid desaturase, chloroplastic OS=Gl... [more]
FAD3C_BRANA8.180e-10378.57Omega-3 fatty acid desaturase, chloroplastic (Frag... [more]
FAD3C_ARATH1.822e-10278.10Omega-3 fatty acid desaturase, chloroplastic OS=Ar... [more]
FAD3E_TOBAC5.487e-9977.51Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_PHAAU1.265e-9570.75Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_SOYBN2.158e-9573.08Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_BRANA2.637e-9371.77Omega-3 fatty acid desaturase, endoplasmic reticul... [more]

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Properties
Property NameValue
Genbank descriptionC21006C04Rv AbsLeaSub1 Citrus clementina cDNA clone C21006C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308943 ID=CX308943; Name=CX308943; organism=Citrus clementina; type=EST; length=652bp
GCGGGGCAACAAGATTTTTGAGATTCAAAATTCCTTTTCCCTTGCTTGCA
TATCCCTTTTATCTTTGGAGTAGAAGTCCGGGGAAGTCTGGTTCTCACTT
TGACCCTAACAGTGACCTGTTTGTCCCAAGTGAGAGGAAGGATGTGATCA
CTTCAACAGTATGCTGGACAGCCATGGCTGCTTTGCTAGTGGGTTTATCA
TTTGTAATGGGTCCTATGCAGTTGCTTAAACTCTATGGCCTTCCATATTG
GATTTTTGTCATGTGGCTGGACCTTGTGACTTACTTGCATCACCATGGGC
ATGAAGACAAACTTCCGTGGTATCGTGGAAAGGAATGGAGTTACTTAAGG
GGAGGGCTCACAACACTTGATCGTGACTATGGATGGTTCAATAACATCCA
CCACGATATTGGAACCCACGTCATACATCACCTCTTCCCTCAGATCCCGC
ATTACCACTTAATAGAAGCAACTGAGGCTGCTAGACCAGTTCTTGGAAAA
TATTACCGTGAGCCAAAGAAATCGGGACCGATACCTTTTAACCTTTTTGG
AGATTTAATTAGAAGCATGAGTAAAGACCACTATGTTAGTGACAATGGCG
ATGTTGTTTACTACCAGACCGACCCACAGCTTAACGGCTCTTCAAATCAG
GG
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