CX309018

Overview
NameCX309018
Unique NameCX309018
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length377
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig677 contig Ccv1_Contig677:18..394. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX309018 vs. ExPASy Swiss-Prot
Match: TIF9_ARATH (Protein TIFY 9 OS=Arabidopsis thaliana GN=TIFY9 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.163e-17
Identity = 49/86 (56.98%), Postives = 65/86 (75.58%), Query Frame = -1 
Query:    3 MSRATVELDFFGLENKE-NSSNRPQFKKF-PRQRSFRDIQGAISKINPEIIKSVIA-----SGSAKSSISLPSTPKEEPITFPDVP 239
            MS+AT+ELDF GLE K+ N++ +P+F+KF  R+RSFRDIQGAISKI+PEIIKS++A     S S+  S S+PSTP+E+    P  P
Sbjct:    1 MSKATIELDFLGLEKKQTNNAPKPKFQKFLDRRRSFRDIQGAISKIDPEIIKSLLASTGNNSDSSAKSRSVPSTPREDQPQIPISP 86
The following BLAST results are available for this feature:
BLAST of CX309018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TIF9_ARATH4.163e-1756.98Protein TIFY 9 OS=Arabidopsis thaliana GN=TIFY9 PE... [more]
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Properties
Property NameValue
Genbank descriptionC21007D07Rv AbsLeaSub1 Citrus clementina cDNA clone C21007D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309018 ID=CX309018; Name=CX309018; organism=Citrus clementina; type=EST; length=377bp
AGAGGCACGTCGGGAAACGTAATCGGCTCTTCTTTTGGAGTAGACGGCAA
AGAGATTGATGATTTCGCAGAACCGGAAGCAATCACAGATTTAATAATCT
CAGGATTAATCTTCGAAATGGCGCCTTGAATGTCTCGAAAGCTTCTTTGG
CGAGGAAATTTCTTGAACTGAGGCCTGTTAGAGGAGTTTTCTTTATTCTC
CAAGCCGAAGAAATCGAGTTCAACGGTAGCTCGAGACATGGCTAATGAAG
AAAAATGTTGAGTAGTGAATGAATCGTGAGAGACGAGTTGAAGAAAAGAA
AAACGAACTTTGGCTTTAGATGTTTGGAGAAGTTGAACAACTTAATTGGT
AAAGCGGGAGGGAGATGGAGATGAAGC
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