CX309030

Overview
NameCX309030
Unique NameCX309030
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length437
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14855 contig Ccv1_Contig14855:812..1248. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309030 vs. ExPASy Swiss-Prot
Match: NDH_DICDI (Probable NADH dehydrogenase OS=Dictyostelium discoideum GN=DDB_G0270104 PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 3.438e-25
Identity = 63/146 (43.15%), Postives = 92/146 (63.01%), Query Frame = -3
Query:    1 EFRSVAEPVSRIQTSLSSDPNSYFYL-ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDRLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGISEEERKRLLHCVVIGGGPTGVEFSGELSDFIMRD 435
            EFRS+AEPV   +     D N + Y+ AS   I+ + + V  ++       H    F++ YD+LVI  G+   TFGIKGV+ENA FL+E++HA+EIR+K++     +  P +S EER+RLL  V++GGG TG+EF+ EL+DF   D
Sbjct:   89 EFRSIAEPVRTTR-----DINEFKYIQASVTSINPENNSVLVKST-----FHNEKPFEMKYDKLVIGVGSRNNTFGIKGVEENANFLKELHHAREIRQKIIECFERASLPDVSTEERERLLSFVIVGGGATGIEFTSELNDFFSED 224          
BLAST of CX309030 vs. ExPASy Swiss-Prot
Match: NDH2_YEAST (External NADH-ubiquinone oxidoreductase 2, mitochondrial OS=Saccharomyces cerevisiae GN=NDE2 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.680e-20
Identity = 57/146 (39.04%), Postives = 84/146 (57.53%), Query Frame = -3
Query:    1 EFRSVAEPVSRIQTSLSSDPNSYFYL-ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDRLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGISEEERKRLLHCVVIGGGPTGVEFSGELSDFIMRD 435
            E +S+ EPV  I       P    Y+ A  + +D    +V  ++V+      E     ++YD LV++ GA+  TF I GV  NA FL+E+  AQ IR KL+  +  + +  +++ ERKRLL  VV+GGGPTGVEF+ EL D+I +D
Sbjct:  147 EMKSIVEPVRSIARRT---PGEVHYIEAEALDVDPKAKKVMVQSVSED----EYFVSSLSYDYLVVSVGAKTTTFNIPGVYGNANFLKEIEDAQNIRMKLMKTIEQASSFPVNDPERKRLLTFVVVGGGPTGVEFAAELQDYINQD 285          
BLAST of CX309030 vs. ExPASy Swiss-Prot
Match: NDI1_YEAST (Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial OS=Saccharomyces cerevisiae GN=NDI1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.265e-19
Identity = 56/152 (36.84%), Postives = 88/152 (57.89%), Query Frame = -3
Query:    1 RSVAEPVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEP------HQFKVA---YDRLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGISEEERKRLLHCVVIGGGPTGVEFSGELSDFIMRD 429
            +S+ EP+  +  +L    N  +Y A    I+ D++ V  ++++     ++P      HQ + A   YD L+ A GAEP TFGI GV +  +FL+E+ ++ EIR+    NL  +      + ER+RLL  VV+GGGPTGVE +GEL D++ +D
Sbjct:  105 KSIIEPI--VNFALKKKGNVTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQD 254          
BLAST of CX309030 vs. ExPASy Swiss-Prot
Match: NDH1_YEAST (External NADH-ubiquinone oxidoreductase 1, mitochondrial OS=Saccharomyces cerevisiae GN=NDE1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.653e-19
Identity = 52/145 (35.86%), Postives = 83/145 (57.24%), Query Frame = -3
Query:    1 EFRSVAEPVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDRLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGISEEERKRLLHCVVIGGGPTGVEFSGELSDFIMRD 435
            E +S+ EPV  I  +  S    ++Y A    +D +   +  ++       +  +   + YD LV+  GA+P TFG  GV E + FL+E++ AQEIR K++ ++  + +    + ER RLL  VV+GGGPTGVEF+ EL D++ +D
Sbjct:  162 ELKSIVEPVRTI--ARRSHGEVHYYEAEAYDVDPENKTIKVKS----SAKNNDYDLDLKYDYLVVGVGAQPNTFGTPGVYEYSSFLKEISDAQEIRLKIMSSIEKAASLSPKDPERARLLSFVVVGGGPTGVEFAAELRDYVDQD 300          
BLAST of CX309030 vs. ExPASy Swiss-Prot
Match: NDH1_SCHPO (Probable NADH-ubiquinone oxidoreductase C3A11.07, mitochondrial OS=Schizosaccharomyces pombe GN=SPAC3A11.07 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.682e-19
Identity = 53/143 (37.06%), Postives = 81/143 (56.64%), Query Frame = -3
Query:    1 RSVAEPVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDRLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGISEEERKRLLHCVVIGGGPTGVEFSGELSDFIMRD 429
            RS+ +P+  +    S      FY A C  +D DK  ++ +      +  E    ++ YD LV + GAE  TF I G+ E   FL+E+  AQ+IR ++L  L  ++   +  E R+R +H VV+GGGPTG+EF+GE++DFI  D
Sbjct:  143 RSIVQPIRYMLRHKSCYVK--FYEAECTDVDADKKVIHIKKTTTDGVDLEQ---EIKYDYLVCSHGAETQTFNIPGIAEYGCFLKEIWDAQKIRARILHCLEQAQFKDLPAETRRRYVHTVVVGGGPTGMEFAGEMADFIEDD 280          
BLAST of CX309030 vs. ExPASy Swiss-Prot
Match: NDH2_SCHPO (Probable NADH-ubiquinone oxidoreductase C947.15c, mitochondrial OS=Schizosaccharomyces pombe GN=SPBC947.15c PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.386e-18
Identity = 54/143 (37.76%), Postives = 82/143 (57.34%), Query Frame = -3
Query:    1 SVAEPVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDRLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNL-MLSENPGISEEERKRLLHCVVIGGGPTGVEFSGELSDFIMRD 426
            S+ EP+  +      DP++  + A C  IDT   +V   T+     ++E  +  + YD LV A GA   TFGI+GV+++  FL+E   A+++  ++   L  +  N  +S EER RLLH  V+GGGPTG+EF+ E+ DFI  D
Sbjct:  143 SITEPIVALFKG-KIDPSN-IHQAECTAIDTSAKKV---TIRGTTEANEGKEAVIPYDTLVFAIGAGNQTFGIQGVRDHGCFLKEAGDAKKVFNRIFEILEQVRFNKDLSPEERARLLHITVVGGGPTGMEFAAEMQDFIDND 280          
The following BLAST results are available for this feature:
BLAST of CX309030 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
NDH_DICDI3.438e-2543.15Probable NADH dehydrogenase OS=Dictyostelium disco... [more]
NDH2_YEAST5.680e-2039.04External NADH-ubiquinone oxidoreductase 2, mitocho... [more]
NDI1_YEAST1.265e-1936.84Rotenone-insensitive NADH-ubiquinone oxidoreductas... [more]
NDH1_YEAST1.653e-1935.86External NADH-ubiquinone oxidoreductase 1, mitocho... [more]
NDH1_SCHPO3.682e-1937.06Probable NADH-ubiquinone oxidoreductase C3A11.07, ... [more]
NDH2_SCHPO2.386e-1837.76Probable NADH-ubiquinone oxidoreductase C947.15c, ... [more]
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Properties
Property NameValue
Genbank descriptionC21007E10Rv AbsLeaSub1 Citrus clementina cDNA clone C21007E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309030 ID=CX309030; Name=CX309030; organism=Citrus clementina; type=EST; length=437bp
ATCTCTCATGATGAAATCACTCAATTCACCGCTAAACTCCACCCCAGTAG
GGCCACCTCCAATGACAACACAATGTAAAAGCCGTTTCCTCTCTTCTTCT
GATATGCCTGGATTTTCAGAGAGCATGAGGTTTAAGAGAAGCTTCTTCCT
TATTTCTTGGGCATGATTTACTTCACGAAGGAAGTATGCATTTTCCTTCA
CCCCCTTGATGCCAAAAGTTAAAGGCTCTGCTCCAGCAGCAATGACTAGC
CTGTCATATGCAACTTTAAATTGGTGAGGCTCATGGGACAATTTGCCATT
GTTGACTGTCTCACAATAAACTTCATGTTTATCAGTGTCAATGCCAATGC
AGGAAGCCAAGTAGAAGTATGAATTCGGATCTGAAGACAATGAAGTCTGT
ATTCGACTAACAGGCTCAGCTACAGAGCGGAATTCCA
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