CX309129

Overview
NameCX309129
Unique NameCX309129
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length323
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15500 contig Ccv1_Contig15500:283..605. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309129 vs. ExPASy Swiss-Prot
Match: PP2B1_ARATH (F-box protein PP2-B1 OS=Arabidopsis thaliana GN=PP2B1 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.973e-23
Identity = 51/100 (51.00%), Postives = 72/100 (72.00%), Query Frame = 2
Query:    5 SFVLDKESGKKCFMVRARELYIEWGNTPSYWIWSYLPESRFAEVAELKLVWWFEIKGRIETKILSLKTIYAAYLVFKFVDTR-YGFERRPIEFGVYFEGR 301
            SF ++K SGKKC+M+ A EL I WG++P+YW W  +PES+F +VAEL+ V WFE++G+I   +LS  T Y+ Y+VFK  + R YGF+  P+E GV F G+
Sbjct:  113 SFWVEKASGKKCYMLSAMELTIIWGDSPAYWKWITVPESKFEKVAELRNVCWFEVRGKISCGMLSKGTHYSVYVVFKTANGRSYGFDLVPVEAGVGFVGK 212          
BLAST of CX309129 vs. ExPASy Swiss-Prot
Match: P2B10_ARATH (F-box protein PP2-B10 OS=Arabidopsis thaliana GN=PP2B10 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.973e-23
Identity = 51/101 (50.50%), Postives = 68/101 (67.33%), Query Frame = 2
Query:   14 LDKESGKKCFMVRARELYIEWGNTPSYWIWSYLPESRFAEVAELKLVWWFEIKGRIETKILSLKTIYAAYLVFKFVDTRYGFERRPIEFGVYFEGRDTEER 316
            L+K SGK+C M+ A  L I WG+ P YW W  +PESRF +VA+L+ V WFEI+GR  T++LS +T Y+AY+VFK VD  YGF+   IE  V   G++   R
Sbjct:   98 LEKASGKRCLMLSAMNLSIIWGDNPQYWQWIPIPESRFEKVAKLRDVCWFEIRGRTNTRVLSPRTRYSAYIVFKGVDKCYGFQNVAIEAAVGVVGQEPSRR 198          
BLAST of CX309129 vs. ExPASy Swiss-Prot
Match: FB95_ARATH (F-box protein At2g02240 OS=Arabidopsis thaliana GN=At2g02240 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.973e-23
Identity = 48/105 (45.71%), Postives = 72/105 (68.57%), Query Frame = 2
Query:    5 SFVLDKESGKKCFMVRARELYIEWGNTPSYWIWSYLPESRFAEVAELKLVWWFEIKGRIETKILSLKTIYAAYLVFKFVDTRYGFERRPIEFGVYFEGRDTEERY 319
            SF L+K SGK+C M+ ++EL+I WG++P YW W  +PESRF ++AEL  V WFEI+G+   ++LS  T Y+AY+VFK  D   G    P+E G+   G+++ +R+
Sbjct:  142 SFWLEKASGKRCIMLSSKELWITWGSSPEYWQWISIPESRFNKIAELLDVCWFEIRGKTSARVLSPGTRYSAYIVFKTKDRCPGLGHLPVEVGLGLVGQESSKRF 246          
BLAST of CX309129 vs. ExPASy Swiss-Prot
Match: P2B11_ARATH (F-box protein PP2-B11 OS=Arabidopsis thaliana GN=PP2B11 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.130e-22
Identity = 49/92 (53.26%), Postives = 65/92 (70.65%), Query Frame = 2
Query:    2 MSFVLDKESGKKCFMVRARELYIEWGNTPSYWIWSYLPESRFAEVAELKLVWWFEIKGRIETKILSLKTIYAAYLVFKFVDTRYGFERRPIE 277
            +SF L+++SG KC+M+ AR L I WG+   YW W  LP +RF EVAEL +VWW EI G+I   +LS  T+YAAY VFK+  + YGF R+P+E
Sbjct:   81 LSFSLERKSGNKCYMMAARALNIVWGHEQRYWHWISLPNTRFGEVAELIMVWWLEITGKINITLLSDDTLYAAYFVFKWNHSPYGF-RQPVE 171          
BLAST of CX309129 vs. ExPASy Swiss-Prot
Match: P2B12_ARATH (Putative F-box protein PP2-B12 OS=Arabidopsis thaliana GN=PP2B12 PE=4 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.293e-22
Identity = 53/103 (51.46%), Postives = 71/103 (68.93%), Query Frame = 2
Query:    5 SFVLDKESGKKCFMVRARELYIEWGNTPSYWIWSYLPESRFAEVAELKLVWWFEIKGRIETKILSLKTIYAAYLVFKFVDT-RYGFERRPIEFGVYFEGRDTE 310
            SF ++K SGKKC+M+ AR+L I W ++P +WIW  +P+SRF EVA L +V WFEI+G+I T +LS  T Y+AYLVFK  +   +GFE  P+E  V F    TE
Sbjct:   84 SFWMEKRSGKKCWMLSARKLDIVWVDSPEFWIWVSIPDSRFEEVAGLLMVCWFEIRGKISTSLLSKATNYSAYLVFKEQEMGSFGFESLPLE--VSFRSTRTE 184          
BLAST of CX309129 vs. ExPASy Swiss-Prot
Match: PP2B8_ARATH (Putative F-box protein PP2-B8 OS=Arabidopsis thaliana GN=PP2B8 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.994e-19
Identity = 47/106 (44.34%), Postives = 67/106 (63.21%), Query Frame = 2
Query:    5 SFVLDKESGKKCFMVRARELYIEWGNTPSYWIWSYLPESRFAEVAELKLVWWFEIKGRIETKILSLKTIYAAYLVFKFVDTRYGFERRPIEFGVYFEGRDTEERYR 322
            S  ++K + K+C M+ A  L I WGN+P  W W   P++RF  VAEL  V  FEI+GRI ++++S KT Y+AY+V+K ++  YGFE   +E  V   G+D EE  R
Sbjct:  119 SLWIEKANAKRCIMISAMNLAIAWGNSPQSWRWIPDPQARFETVAELLEVCLFEIRGRINSRVISPKTRYSAYIVYKKLNICYGFENVAVEVVVGVVGQDLEESCR 224          
BLAST of CX309129 vs. ExPASy Swiss-Prot
Match: PP2B2_ARATH (Putative F-box protein PP2-B2 OS=Arabidopsis thaliana GN=PP2B2 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.443e-19
Identity = 47/106 (44.34%), Postives = 69/106 (65.09%), Query Frame = 2
Query:    5 SFVLDKESGKKCFMVRARE-LYIEWGNTPSYWIWSYLPESRFAEVAELKLVWWFEIKGRIETKILSLKTIYAAYLVFKFVDTRYGFERRPIEFGVYFEGRDTEERY 319
            SF L+KE+GKKCFM+  ++ ++I W +TP YW W  +PE+RF EV EL  V WFE++G + TK LS  T Y+AY+VFK  +        P+E  V   G+++ +R+
Sbjct:  123 SFWLEKENGKKCFMLSPKKSMWITWVSTPQYWRWISIPEARFEEVPELLNVCWFEVRGGMNTKELSPGTRYSAYIVFKTKNGCPNLGDVPVEATVGLVGQESSQRH 228          
BLAST of CX309129 vs. ExPASy Swiss-Prot
Match: PP2B6_ARATH (Putative F-box protein PP2-B6 OS=Arabidopsis thaliana GN=PP2B6 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.897e-19
Identity = 46/105 (43.81%), Postives = 67/105 (63.81%), Query Frame = 2
Query:    5 SFVLDKESGKKCFMVRARELYIEWGNTPSYWIWSYLPESRFAEVAELKLVWWFEIKGRIETKILSLKTIYAAYLVFKFVDTRYGFERRPIEFGVYFEGRDTEERY 319
            SF L+  SGKKC ++ A+EL+I  GN P YW W  L ES F +V EL     F++ G + T+ILSL T Y+ Y+V+K  D R+G    PI+ GV F+G++  +++
Sbjct:  126 SFWLETASGKKCVLLAAKELWITGGNNPEYWQWIELCESSFEKVPELLNNRSFQMGGSMSTQILSLGTHYSVYIVYKIKDERHGLRDLPIQVGVGFKGQEMPKQF 230          
BLAST of CX309129 vs. ExPASy Swiss-Prot
Match: PP2B5_ARATH (F-box protein PP2-B5 OS=Arabidopsis thaliana GN=PP2B5 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.867e-17
Identity = 46/98 (46.94%), Postives = 62/98 (63.27%), Query Frame = 2
Query:    2 MSFVLDKESGKKCFMVRARELYIEWGNTPSYWIWSYLPESRFAEVAELKLVWWFEIKGRIETKILSLKTIYAAYLVFKFVDTRYGFERRPIEFGVYFE 295
            MSF LDK SGKKC M+ A++L I     P YW W  +PESRF EV EL  +  F+I+G + T+I+S  T Y+AY+V+       GF+  PI+ GV F+
Sbjct:  115 MSFRLDKASGKKCVMLSAKKLLISRVVNPKYWKWISIPESRFDEVPELLNIDSFDIRGVLNTRIISPGTHYSAYIVYTKTSHFNGFQTSPIQAGVGFQ 212          
BLAST of CX309129 vs. ExPASy Swiss-Prot
Match: P2B14_ARATH (F-box protein PP2-B14 OS=Arabidopsis thaliana GN=PP2B14 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.635e-13
Identity = 37/93 (39.78%), Postives = 57/93 (61.29%), Query Frame = 2
Query:    8 FVLDKESGKKCFMVRARELYIEWGNTPSYWIWSYLPESRFAEVAELKLVWWFEIKGRIETKILSLKTIYAAYLVFKFVDTRYGFERRPIEFGV 286
            F ++K SGK  +++ AR++ I   +  SYW WS + +SRF+E AEL +    EI+G+I+T++LS  T Y AYL+ K     YG +  P E  +
Sbjct:   86 FKINKFSGKISYVLSARDISITHSDHASYWSWSNVSDSRFSESAELIITDRLEIEGKIQTRVLSANTRYGAYLIVKVTKGAYGLDLVPAETSI 178          
The following BLAST results are available for this feature:
BLAST of CX309129 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PP2B1_ARATH2.973e-2351.00F-box protein PP2-B1 OS=Arabidopsis thaliana GN=PP... [more]
P2B10_ARATH2.973e-2350.50F-box protein PP2-B10 OS=Arabidopsis thaliana GN=P... [more]
FB95_ARATH2.973e-2345.71F-box protein At2g02240 OS=Arabidopsis thaliana GN... [more]
P2B11_ARATH1.130e-2253.26F-box protein PP2-B11 OS=Arabidopsis thaliana GN=P... [more]
P2B12_ARATH4.293e-2251.46Putative F-box protein PP2-B12 OS=Arabidopsis thal... [more]
PP2B8_ARATH1.994e-1944.34Putative F-box protein PP2-B8 OS=Arabidopsis thali... [more]
PP2B2_ARATH4.443e-1944.34Putative F-box protein PP2-B2 OS=Arabidopsis thali... [more]
PP2B6_ARATH9.897e-1943.81Putative F-box protein PP2-B6 OS=Arabidopsis thali... [more]
PP2B5_ARATH1.867e-1746.94F-box protein PP2-B5 OS=Arabidopsis thaliana GN=PP... [more]
P2B14_ARATH1.635e-1339.78F-box protein PP2-B14 OS=Arabidopsis thaliana GN=P... [more]

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Properties
Property NameValue
Genbank descriptionC21008H04Rv AbsLeaSub1 Citrus clementina cDNA clone C21008H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309129 ID=CX309129; Name=CX309129; organism=Citrus clementina; type=EST; length=323bp
TATGAGCTTTGTGCTGGATAAAGAAAGCGGGAAAAAGTGTTTCATGGTTA
GAGCAAGAGAGCTTTATATTGAATGGGGAAATACACCCAGTTATTGGATA
TGGTCTTATCTACCAGAGTCTAGGTTTGCTGAAGTGGCTGAACTCAAGCT
TGTTTGGTGGTTTGAAATTAAAGGAAGGATAGAGACAAAAATTTTGTCCT
TGAAAACTATTTACGCAGCTTACCTTGTGTTCAAGTTTGTCGATACCAGG
TATGGGTTTGAAAGAAGACCTATAGAGTTTGGTGTCTACTTTGAGGGAAG
GGATACTGAGGAAAGGTATAGAG
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