CX309133

Overview
NameCX309133
Unique NameCX309133
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length442
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig735 contig Ccv1_Contig735:262..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: HBL1_GOSHI (Non-symbiotic hemoglobin 1 OS=Gossypium hirsutum GN=HB1 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 6.753e-56
Identity = 108/122 (88.52%), Postives = 113/122 (92.62%), Query Frame = 1
Query:   76 EGRAFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            EG+ FTEEQEALVVKSW VMKK   ELGLKFFL+IFEIAPSA+KLFSFLRDSNVPLEQN KLKPHAMSVFVMTCESAVQLRKAGKVTVRES  KKLGA HFKYGVV+EHFEVTKF+LLETIK
Sbjct:    5 EGKVFTEEQEALVVKSWTVMKKKTAELGLKFFLKIFEIAPSAKKLFSFLRDSNVPLEQNTKLKPHAMSVFVMTCESAVQLRKAGKVTVRESNLKKLGATHFKYGVVDEHFEVTKFALLETIK 126          
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: HBP2_CASGL (Hemoglobin-2 OS=Casuarina glauca GN=HBII PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 2.837e-54
Identity = 105/122 (86.07%), Postives = 114/122 (93.44%), Query Frame = 1
Query:   76 EGRAFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            EGR FTEEQEALVVKSW+ MK NAGELGLKFFL+IFEIAPSAQKLFSFL+DSNVPLE+N KLK HAMSVF+MTCESAVQLRKAGKVTVRES+ KKLGA HFK+GV +EHFEVTKF+LLETIK
Sbjct:    5 EGRGFTEEQEALVVKSWSAMKPNAGELGLKFFLKIFEIAPSAQKLFSFLKDSNVPLERNPKLKSHAMSVFLMTCESAVQLRKAGKVTVRESSLKKLGASHFKHGVADEHFEVTKFALLETIK 126          
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: HBL1_MEDSA (Non-symbiotic hemoglobin 1 OS=Medicago sativa GN=MHB1 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 1.839e-53
Identity = 103/120 (85.83%), Postives = 112/120 (93.33%), Query Frame = 1
Query:   82 RAFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            + FTEEQEALVVKSWN MKKN+ ELGLK FL+IFEIAPSAQKLFSFL+DS VPLEQN KLKPHAMSVF+MTCESAVQLRK+GKVTVRES+ KKLGA HFKYGVV+EHFEVTKF+LLETIK
Sbjct:    7 KGFTEEQEALVVKSWNAMKKNSAELGLKLFLKIFEIAPSAQKLFSFLKDSKVPLEQNTKLKPHAMSVFLMTCESAVQLRKSGKVTVRESSLKKLGANHFKYGVVDEHFEVTKFALLETIK 126          
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: HBL_TRETO (Non-symbiotic hemoglobin OS=Trema tomentosa GN=GLB1 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 4.240e-50
Identity = 99/127 (77.95%), Postives = 113/127 (88.98%), Query Frame = 1
Query:   61 MANINEGRAFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            M++    + FTEEQEALVVKSW VMKKN+ ELGLKFFL+IFEIAPSA+ LFS+L+DS +PLEQN KLKPHAM+VFVMTCESAVQLRKAGKVTVRES  K+LGA+HFK GVVNEHFE T+F+LLETIK
Sbjct:    1 MSSSEVDKVFTEEQEALVVKSWAVMKKNSAELGLKFFLKIFEIAPSAKNLFSYLKDSPIPLEQNPKLKPHAMTVFVMTCESAVQLRKAGKVTVRESNLKRLGAIHFKNGVVNEHFE-TRFALLETIK 126          
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: HBPL_PARRI (Non-legume hemoglobin OS=Parasponia rigida PE=1 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 1.611e-49
Identity = 95/127 (74.80%), Postives = 112/127 (88.19%), Query Frame = 1
Query:   61 MANINEGRAFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            M++    + FTEEQEALVVK+W VMKKN+ ELGL+FFL+IFEIAPSA+ LFS+L+DS VPLEQN KLKPHA +VFVMTCESAVQLRKAGK TV+ES  K++GA+HFK GVVNEHFEVT+F+LLETIK
Sbjct:    1 MSSSEVNKVFTEEQEALVVKAWAVMKKNSAELGLQFFLKIFEIAPSAKNLFSYLKDSPVPLEQNPKLKPHATTVFVMTCESAVQLRKAGKATVKESDLKRIGAIHFKTGVVNEHFEVTRFALLETIK 127          
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: HBPL_PARAD (Non-legume hemoglobin OS=Parasponia andersonii PE=1 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 1.611e-49
Identity = 95/127 (74.80%), Postives = 112/127 (88.19%), Query Frame = 1
Query:   61 MANINEGRAFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            M++    + FTEEQEALVVK+W VMKKN+ ELGL+FFL+IFEIAPSA+ LFS+L+DS VPLEQN KLKPHA +VFVMTCESAVQLRKAGK TV+ES  K++GA+HFK GVVNEHFEVT+F+LLETIK
Sbjct:    1 MSSSEVNKVFTEEQEALVVKAWAVMKKNSAELGLQFFLKIFEIAPSAKNLFSYLKDSPVPLEQNPKLKPHATTVFVMTCESAVQLRKAGKATVKESDLKRIGAIHFKTGVVNEHFEVTRFALLETIK 127          
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: HBL1_ARATH (Non-symbiotic hemoglobin 1 OS=Arabidopsis thaliana GN=AHB1 PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 1.364e-48
Identity = 95/124 (76.61%), Postives = 110/124 (88.71%), Query Frame = 1
Query:   73 NEGR-AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            +EG+  FTEEQEALVVKSW+VMKKN+ ELGLK F++IFEIAP+ +K+FSFLRDS +P EQN KLKPHAMSVFVM CESAVQLRK GKVTVRE+T K+LGA H KYGVV+EHFEV K++LLETIK
Sbjct:    3 SEGKIVFTEEQEALVVKSWSVMKKNSAELGLKLFIKIFEIAPTTKKMFSFLRDSPIPAEQNPKLKPHAMSVFVMCCESAVQLRKTGKVTVRETTLKRLGASHSKYGVVDEHFEVAKYALLETIK 126          
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: HBL_MAIZE (Non-symbiotic hemoglobin OS=Zea mays GN=HB PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 3.714e-46
Identity = 91/129 (70.54%), Postives = 111/129 (86.05%), Query Frame = 1
Query:   58 SMANINEGRA-FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            ++A  ++G   F EEQEALV+KSW VMKK+A  LGL+FFL++FEIAPSA+++FSFLRDS+VPLE+N KLK HAMSVFVMTCE+A QLRKAGKVTVRE+T K+LGA H +YGV + HFEVT F+LLETIK
Sbjct:    2 ALAEADDGAVVFGEEQEALVLKSWAVMKKDAANLGLRFFLKVFEIAPSAEQMFSFLRDSDVPLEKNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRETTLKRLGATHLRYGVADGHFEVTGFALLETIK 130          
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: HBL_ZEAMP (Non-symbiotic hemoglobin OS=Zea mays subsp. parviglumis GN=HB PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 4.851e-46
Identity = 91/129 (70.54%), Postives = 111/129 (86.05%), Query Frame = 1
Query:   58 SMANINEGRA-FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            ++A  ++G   F EEQEALV+KSW VMKK+A  LGL+FFL++FEIAPSA+++FSFLRDS+VPLE+N KLK HAMSVFVMTCE+A QLRKAGKVTVRE+T K+LGA H +YGV + HFEVT F+LLETIK
Sbjct:    2 ALAEADDGAVVFGEEQEALVLKSWAVMKKDAANLGLRFFLKVFEIAPSAKQMFSFLRDSDVPLEKNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRETTLKRLGATHLRYGVADGHFEVTGFALLETIK 130          
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: HBL2_ORYSJ (Non-symbiotic hemoglobin 2 OS=Oryza sativa subsp. japonica GN=HB2 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 8.274e-46
Identity = 86/119 (72.27%), Postives = 108/119 (90.76%), Query Frame = 1
Query:   85 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            +F+EEQEALV+KSW +MKK++  +GL+FFL+IFE+APSA ++FSFLR+S+VPLE+N KLK HAMSVFVMTCE+A QLRKAGKVTVR++T K+LGA HFKYGV + HFEVT+F+LLETIK
Sbjct:   16 SFSEEQEALVLKSWAIMKKDSANIGLRFFLKIFEVAPSASQMFSFLRNSDVPLEKNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRDTTLKRLGATHFKYGVGDAHFEVTRFALLETIK 134          
The following BLAST results are available for this feature:
BLAST of CX309133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
HBL1_GOSHI6.753e-5688.52Non-symbiotic hemoglobin 1 OS=Gossypium hirsutum G... [more]
HBP2_CASGL2.837e-5486.07Hemoglobin-2 OS=Casuarina glauca GN=HBII PE=3 SV=1[more]
HBL1_MEDSA1.839e-5385.83Non-symbiotic hemoglobin 1 OS=Medicago sativa GN=M... [more]
HBL_TRETO4.240e-5077.95Non-symbiotic hemoglobin OS=Trema tomentosa GN=GLB... [more]
HBPL_PARRI1.611e-4974.80Non-legume hemoglobin OS=Parasponia rigida PE=1 SV... [more]
HBPL_PARAD1.611e-4974.80Non-legume hemoglobin OS=Parasponia andersonii PE=... [more]
HBL1_ARATH1.364e-4876.61Non-symbiotic hemoglobin 1 OS=Arabidopsis thaliana... [more]
HBL_MAIZE3.714e-4670.54Non-symbiotic hemoglobin OS=Zea mays GN=HB PE=2 SV... [more]
HBL_ZEAMP4.851e-4670.54Non-symbiotic hemoglobin OS=Zea mays subsp. parvig... [more]
HBL2_ORYSJ8.274e-4672.27Non-symbiotic hemoglobin 2 OS=Oryza sativa subsp. ... [more]

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Properties
Property NameValue
Genbank descriptionC21008H10Rv AbsLeaSub1 Citrus clementina cDNA clone C21008H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309133 ID=CX309133; Name=CX309133; organism=Citrus clementina; type=EST; length=442bp
GCGGGGATTCAACAACATTTTGTGTATCACATTCAATCCTCAGGTGTCCA
AAAGAAATCAATGGCCAACATTAACGAAGGTAGAGCCTTTACTGAAGAGC
AAGAAGCTTTAGTTGTCAAGTCATGGAATGTAATGAAGAAGAATGCTGGA
GAATTGGGTCTTAAATTCTTCTTGAGGATCTTTGAGATTGCACCATCAGC
CCAAAAGCTGTTCTCATTCTTGAGAGACTCAAATGTGCCTCTAGAGCAGA
ACCAGAAGCTCAAGCCCCACGCCATGTCTGTTTTTGTTATGACGTGTGAA
TCAGCAGTGCAACTGAGGAAAGCAGGCAAAGTGACAGTAAGAGAATCAAC
TCAAAAAAAATTAGGAGCTGTCCACTTCAAATATGGTGTTGTTAATGAGC
ATTTTGAGGTCACAAAATTTTCACTACTGGAAACCATAAAAG
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