DY257737

Overview
NameDY257737
Unique NameDY257737
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length633
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9507 contig Ccv1_Contig9507:468..1100. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257737 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.786e-44
Identity = 83/143 (58.04%), Postives = 100/143 (69.93%), Query Frame = 3
Query:   12 YPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGLGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 434
            YPC  GK YYGRGP+QL+WNYNY  C                 ATD VLSFK+A+WFWMT Q PKPSCH+V+T  W+PSA D  AGRLPGYG+ TN++NGG+ECG G N  V +R+GFF  +CG  G+  G NLDCY+Q+PFG
Sbjct:  103 YPCAPGKSYYGRGPLQLSWNYNYGPCGEALRVNLLGNPDLV--ATDRVLSFKTALWFWMTPQAPKPSCHDVLTGRWQPSAADTAAGRLPGYGVLTNLLNGGLECGKGPNPQVADRLGFFRRYCGLLGVGTGNNLDCYNQRPFG 243          
BLAST of DY257737 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 6.207e-44
Identity = 84/151 (55.63%), Postives = 102/151 (67.55%), Query Frame = 3
Query:   12 YPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGLGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLILMARSM 458
            +PC    +YYGRGPIQ++WNYNY +C                 ATDPV+SFK+A+WFWMT Q PKPSCH+VIT  W PS+ D  AGRLPGYG  TNIINGG+ECG G +  V++RIGF+  +C  FGI  G NLDCY Q+PFG  L   S+
Sbjct:  168 FPCASGKQYYGRGPIQISWNYNYGQCGRAIGVDLLNNPDLV--ATDPVISFKTALWFWMTPQSPKPSCHDVITGGWTPSSADRAAGRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFYKRYCDIFGIGYGDNLDCYSQRPFGSSLPLSSI 316          
BLAST of DY257737 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 6.207e-44
Identity = 81/144 (56.25%), Postives = 98/144 (68.06%), Query Frame = 3
Query:    9 NYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGLGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 434
            NYPC  GK Y+GRGP+QL+WNYNY +C                 ++DP +SFKSA WFWMT Q PKPSCH VI   W PS++D  AGR+PGYG+ TNIINGG+ECG GWN  V +RIGF+  +C   G+  G NLDCY+Q PFG
Sbjct:  175 NYPCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLLNNPDLL--SSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRVPGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFG 316          
BLAST of DY257737 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.806e-43
Identity = 81/143 (56.64%), Postives = 97/143 (67.83%), Query Frame = 3
Query:    9 NYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGLGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 431
            NYPC  GK Y+GRGP+QLTWNYNY +C                 ATDP +SFKSA WFWMT Q PKPSCH+VI   W PS +D  AGR+PG+GL TNIINGG+ECG GWN  V +RIGF+  +C   G+  G NLDCY+Q+ +
Sbjct:  172 NYPCAPGKQYFGRGPMQLTWNYNYGQCGRAIGVDLLNNPDLL--ATDPTISFKSAFWFWMTPQSPKPSCHDVIIGAWSPSGSDQAAGRVPGFGLITNIINGGLECGQGWNAKVEDRIGFYKRYCDTLGVGYGNNLDCYNQRSY 312          
BLAST of DY257737 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 8.963e-43
Identity = 80/144 (55.56%), Postives = 96/144 (66.67%), Query Frame = 3
Query:    9 NYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGLGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 434
            NYPC  GK Y+GRGP+QL+WNYNY +C                 ++DP +SFKSA WFWMT Q PKPSCH VI   W PS++D  AGR  GYG+ TNIINGG+ECG GWN  V +RIGF+  +C   G+  G NLDCY+Q PFG
Sbjct:  153 NYPCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLLNNPDLL--SSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRATGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFG 294          
BLAST of DY257737 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.997e-42
Identity = 83/154 (53.90%), Postives = 101/154 (65.58%), Query Frame = 3
Query:   12 YPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGLGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLILMARSM*SS 467
            +PC    +YYGRGPIQ++WNYNY +C                 ATD V+SFKSA+WFWMTAQ PKPS H+VIT  W PS+ DV A RLPGYG  TNIINGG+ECG G +  V++RIGFF  +C   G+  G NLDCY Q PFG  L+   + +S
Sbjct:  176 FPCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLNKPDLV--ATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSLLLSDLVTS 327          
BLAST of DY257737 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 172.17 bits (435), Expect = 1.997e-42
Identity = 79/142 (55.63%), Postives = 97/142 (68.31%), Query Frame = 3
Query:   12 YPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGLGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 431
            +PC    +YYGRGP+QL+WNYNY  C                 A D V++FK+AIWFWMTAQPPKPSCH VI  +W+PS  D  AGRLPGYG+ TNIINGG+ECG G +  V +RIGF+  +C  FG+ PG NLDCY+Q+ F
Sbjct:  187 WPCASGKRYYGRGPMQLSWNYNYGLCGRAIGVDLLNNPDLV--ANDAVIAFKAAIWFWMTAQPPKPSCHAVIAGQWQPSDADRAAGRLPGYGVITNIINGGLECGRGQDGRVADRIGFYQRYCNIFGVNPGGNLDCYNQRSF 326          
BLAST of DY257737 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.406e-42
Identity = 81/143 (56.64%), Postives = 96/143 (67.13%), Query Frame = 3
Query:   12 YPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGLGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 434
            +PC    +YYGRGPIQ++WNYNY +C                 ATD V+SFKSA+WFWMTAQ PKPS H+VIT  W PS+ DV A RLPGYG  TNIINGG+ECG G +  V++RIGFF  +C   G+  G NLDCY Q PFG
Sbjct:  175 FPCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLNKPDLV--ATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFG 315          
BLAST of DY257737 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.810e-42
Identity = 81/148 (54.73%), Postives = 100/148 (67.57%), Query Frame = 3
Query:   12 YPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGLGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLILMA 449
            +PC    KY+GRGPIQL++NYNY                    A+DPV+SFK+A+WFWMT Q PKPSCH+VIT +W PS+ D+ AGR+PGYG+ TNIINGG+ECG G +D V NRIGF+  +C   GI  G NLDCY Q+PF   L A
Sbjct:  187 WPCAPDKKYFGRGPIQLSYNYNY--GPAGEAIGEDLLNNPELVASDPVVSFKTALWFWMTPQSPKPSCHDVITGQWTPSSGDIAAGRVPGYGVITNIINGGLECGFGPDDRVANRIGFYQRYCDVLGIGYGSNLDCYDQRPFNSGLTA 332          
BLAST of DY257737 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 8.389e-41
Identity = 84/145 (57.93%), Postives = 94/145 (64.83%), Query Frame = 3
Query:    9 NYPC-RGKYY-GRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGLGW-NDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 434
            NY C  GK Y GRGPIQL+WNYNY  C                  TDPV+SFK+AIWFWM  Q PKPSCH VIT  W PSA D+ AGR+PGYG+ TNIINGGIECG G  N A  +RIGF+  +C   G   G NLDCY Q+PFG
Sbjct:  188 NYQCVAGKQYCGRGPIQLSWNYNYGLCGDDLKLPLLQEPELVE--TDPVISFKTAIWFWMKPQSPKPSCHAVITGNWTPSAADLEAGRVPGYGVITNIINGGIECGQGGPNAANEDRIGFYKKYCDSLGTTYGSNLDCYQQRPFG 330          
The following BLAST results are available for this feature:
BLAST of DY257737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIT_CARPA2.786e-4458.04Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI2_PEA6.207e-4455.63Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHI1_GOSHI6.207e-4456.25Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI1_THECC1.806e-4356.64Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHI2_GOSHI8.963e-4355.56Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHIT_PHAVU1.997e-4253.90Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHIB_ARATH1.997e-4255.63Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI5_PHAVU3.406e-4256.64Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI9_ORYSJ5.810e-4254.73Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI6_POPTR8.389e-4157.93Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1AG06ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257737 ID=DY257737; Name=DY257737; organism=Citrus clementina; type=EST; length=633bp
GTAATCTTAACTATCCATGTCGAGGGAAGTACTATGGCCGAGGTCCAATT
CAACTCACTTGGAATTACAATTACTTACGGTGCGGAGAAGACCTAGGGCT
AGGAGAGGAGTTGTTGAACAATCCAGACCTTCTTGCTACTGATCCAGTAC
TATCATTCAAGTCAGCAATCTGGTTCTGGATGACCGCACAGCCACCAAAG
CCATCATGCCACGAAGTCATTACCGACGAATGGAAACCATCAGCAAATGA
CGTAAACGCCGGCCGGCTTCCGGGATACGGTCTAACCACAAATATAATCA
ACGGTGGAATTGAATGTGGCCTAGGTTGGAATGACGCTGTACGTAACCGT
ATTGGGTTCTTTAGCACTTTCTGTGGCAAGTTTGGGATTCAGCCTGGTTA
CAATCTTGATTGCTACCACCAACAGCCTTTTGGCCTTATTCTGATGGCAC
GATCTATGTGATCATCATGATCAACGTTTTAGTAAAATAAGCTTAATAAA
AGCTACTTAATAAAAACTTTAGATGTCACACTTGTAGGTGGACAACTAAG
TTGTTACGCTCTTATTGTAAATAAATTAAATAAGACTGATCCAACATGGA
TCAATGAGTCTTCTCCNAANAAAAAAAAAAAAA
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