DY257739

Overview
NameDY257739
Unique NameDY257739
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1096
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY257739_ssr605 microsatellite DY257739_ssr605:605..616. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9913 contig Ccv1_Contig9913:4..1101. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: AB2A_ARATH (ABC transporter A family member 2 OS=Arabidopsis thaliana GN=ABCA2 PE=2 SV=1)

HSP 1 Score: 413.305 bits (1061), Expect = 1.265e-114
Identity = 212/303 (69.97%), Postives = 248/303 (81.85%), Query Frame = 1
Query:    1 VRAGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQDAKKGRAIILTTHSMEEADILSDRIAIMAKGRLRCIGTSIRLKSKFGTGFIVTVNFTGSNNGQSPLNGDHEVASPHHDAVKQFFETHLDVLPKEENKAFLTYVIPHDREAILKKFFVELQDREKELGIADIQVSLTTLEDVFLNIAKQAELETAAAEGRLVTLNLTSGASVEIPPGARFVGIPGMESAENPRGIMVEVYWEQDDTGALCISGHSPEKPIPPHVELDASSASTSRG-NLFGQTG--PVHGNVIDP 900
            +RAGSYSGGMKRRLSVA++LIGDPKLV LDEPTTGMDPITRRHVWDIIQ+ KKGRAIILTTHSMEEADILSDRI IMAKGRLRCIGTSIRLKS+FGTGFI  ++F  SNN     NG  E  S   + VK+FF+ HL V P EENKAF+T+VIPHD+E +L  FF ELQDRE+E GI+DIQ+ L TLE+VFLNIA++AELE+AA +G +VTL+LTSG+SVEIP GARF+GIPG E+AENPRG+MVEVYW+QD++G+LCISGHS E PIP ++ +    A    G NL G+ G   V G VIDP
Sbjct:  660 IRAGSYSGGMKRRLSVAVSLIGDPKLVFLDEPTTGMDPITRRHVWDIIQETKKGRAIILTTHSMEEADILSDRIGIMAKGRLRCIGTSIRLKSRFGTGFIANISFVESNNH----NG--EAGSDSREPVKKFFKDHLKVKPIEENKAFMTFVIPHDKENLLTSFFAELQDREEEFGISDIQLGLATLEEVFLNIARKAELESAAVDGTMVTLDLTSGSSVEIPVGARFIGIPGTETAENPRGVMVEVYWQQDESGSLCISGHSTEMPIPENIPVTDPVAPGHGGVNLLGRRGRRQVQGIVIDP 956          
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: AB11A_ARATH (ABC transporter A family member 11 OS=Arabidopsis thaliana GN=ABCA11 PE=3 SV=1)

HSP 1 Score: 391.349 bits (1004), Expect = 5.146e-108
Identity = 201/300 (67.00%), Postives = 239/300 (79.67%), Query Frame = 1
Query:    1 VRAGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQDAKKGRAIILTTHSMEEADILSDRIAIMAKGRLRCIGTSIRLKSKFGTGFIVTVNFTGSNNGQSPLNGDHEVA-SPHHDAVKQFFETHLDVLPKEENKAFLTYVIPHDREAILKKFFVELQDREKELGIADIQVSLTTLEDVFLNIAKQAELETAAAEGRLVTLNLTSGASVEIPPGARFVGIPGMESAENPRGIMVEVYWEQDDTGALCISGHSPEKPIPPHVELDASSASTSRGNLFGQTGPVHGNVID 897
            VRAGSYSGGMKRRLSVA+ALIGDPKLV LDEPTTGMDPITRRHVWDIIQ++KKGRAIILTTHSMEEADILSDRI IMAKGRLRCIGTSIRLKS+FGTGF+ TV+F  + N       D+ +     H+ +K+FF+ HL V P EENKAF+T+VIPHD+E +L  FF ELQ+RE E GI+DIQ+ L TLE+VFLNIA+QAELE+A AEG +VTL L SG S+EIP GARFVGIP  E+AENP G+MVEVYW+QD +G++CISGHS E  +P +V +    +  + G+   + G V G VID
Sbjct:  661 VRAGSYSGGMKRRLSVAVALIGDPKLVFLDEPTTGMDPITRRHVWDIIQESKKGRAIILTTHSMEEADILSDRIGIMAKGRLRCIGTSIRLKSRFGTGFVATVSFIENKN-------DNNIGVGASHEPLKKFFKEHLKVEPTEENKAFMTFVIPHDKENLLTGFFEELQNRESEFGISDIQLGLATLEEVFLNIARQAELESATAEGNMVTLELASGISLEIPVGARFVGIPDTENAENPSGVMVEVYWQQDGSGSMCISGHSSEMRVPQNVPVTRPPSPNALGHKSLRQG-VRGIVID 952          
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: AB9A_ARATH (ABC transporter A family member 9 OS=Arabidopsis thaliana GN=ABCA9 PE=3 SV=1)

HSP 1 Score: 390.963 bits (1003), Expect = 6.721e-108
Identity = 204/299 (68.23%), Postives = 237/299 (79.26%), Query Frame = 1
Query:    1 VRAGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQDAKKGRAIILTTHSMEEADILSDRIAIMAKGRLRCIGTSIRLKSKFGTGFIVTVNFTGSNNGQSPLNGDHEVASPHHDAVKQFFETHLDVLPKEENKAFLTYVIPHDREAILKKFFVELQDREKELGIADIQVSLTTLEDVFLNIAKQAELETAAAEGRLVTLNLTSGASVEIPPGARFVGIPGMESAENPRGIMVEVYWEQDDTGALCISGHSPEKPIPPHVELDASSASTSRGNLFGQTGPVHGNVID 897
            +RAGSYSGGMKRRLSVAIALIGDPKLV LDEPTTGMDPITRRHVWDIIQ++KKGRAIILTTHSMEEADILSDRI IMAKGRLRCIGTSIRLKS+FGTGF+ TV+F  +    +P            + +K+FF+  L V P EENKAF+T+VIPHD+E +LK FF ELQDRE E GIADIQ+ L TLE+VFLNIA++AELE+A  EG +VTL L SG +VEIP GARFVGIPG E+AENPRG+MVEVYW+QD +G++CISGHS E  IP +V +    +S   G+  GQ   V G VID
Sbjct:  662 IRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQESKKGRAIILTTHSMEEADILSDRIGIMAKGRLRCIGTSIRLKSRFGTGFVATVSFIENKKDGAP------------EPLKRFFKERLKVEPTEENKAFMTFVIPHDKEQLLKGFFAELQDRESEFGIADIQLGLATLEEVFLNIARRAELESATVEGTMVTLELESGIAVEIPVGARFVGIPGTENAENPRGLMVEVYWQQDGSGSMCISGHSAEMRIPENVSVIYEPSSQVLGH--GQR-RVRGIVID 945          
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: ABCA3_HUMAN (ATP-binding cassette sub-family A member 3 OS=Homo sapiens GN=ABCA3 PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 2.786e-37
Identity = 84/198 (42.42%), Postives = 123/198 (62.12%), Query Frame = 1
Query:    4 RAGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQDAKKGRAIILTTHSMEEADILSDRIAIMAKGRLRCIGTSIRLKSKFGTGFIVTVNFTGSNNGQSPLNGDHEVASPH--HDAVKQFFETHLDVLPKEENK-AFLTYVIPHDREAILKKFFVELQDREKELGIADIQVSLTTLEDVFLNIAK 588
            R+   SGGM+R+LS+ IALI   K++ILDEPT+GMD I+RR +WD++Q  K  R I+LTTH M+EAD+L DRIAIMAKG L+C G+S+ LK K+G G+ +T+                 V  PH   + + Q    H+     E +  A L++++P +     +  F +L+ ++KELGIA    S+TT+E+VFL + K
Sbjct:  661 RSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQRQKSDRTIVLTTHFMDEADLLGDRIAIMAKGELQCCGSSLFLKQKYGAGYHMTL-----------------VKEPHCNPEDISQLVHHHVPNATLESSAGAELSFILPRESTHRFEGLFAKLEKKQKELGIASFGASITTMEEVFLRVGK 841          

HSP 2 Score: 130.183 bits (326), Expect = 2.138e-29
Identity = 76/193 (39.38%), Postives = 117/193 (60.62%), Query Frame = 1
Query:   13 SYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQDAKK-GRAIILTTHSMEEADILSDRIAIMAKGRLRCIGTSIRLKSKFGTGFIVTVNFTGSNNGQSPLNGDHEVASPHHDAVKQFFE-THLDVLPKEENKAFLTYVIPHDREAILKKFFVELQDREKELGIADIQVSLTTLEDVFLNIA 585
            +YSGG KR+LS  IALIG+P ++ LDEP+TGMDP+ RR +WD +  A++ G+AII+T+HSMEE + L  R+AIM +G+ +C+G+   LKSKFG+G+        S   +    G  E      +  K F + T    + ++E++  + Y +P  R+    K F  L+  +++ G+ D  VS  +LE VFL+ A
Sbjct: 1514 TYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKSKFGSGY--------SLRAKVQSEGQQEAL----EEFKAFVDLTFPGSVLEDEHQGMVHYHLP-GRDLSWAKVFGILEKAKEKYGVDDYSVSQISLEQVFLSFA 1693          
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: ABCA3_MOUSE (ATP-binding cassette sub-family A member 3 OS=Mus musculus GN=Abca3 PE=2 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 6.207e-37
Identity = 80/199 (40.20%), Postives = 124/199 (62.31%), Query Frame = 1
Query:    1 VRAGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQDAKKGRAIILTTHSMEEADILSDRIAIMAKGRLRCIGTSIRLKSKFGTGFIVTVNFTGSNNGQSPLNGDHEVASPH--HDAVKQFFETHL-DVLPKEENKAFLTYVIPHDREAILKKFFVELQDREKELGIADIQVSLTTLEDVFLNIAK 588
            +R+   SGGMKR+LS+ IALI   K+++LDEPT GMD ++RR +WD++Q  K  R ++LTTH M+EAD+L DRIAI+AKG L+C G+S+ LK K+G G+ +T+                 V  PH   + + Q    H+ + + +    A L++++P +     +  F +L+ ++KELGIA    S+TT+E+VFL + K
Sbjct:  660 LRSKFLSGGMKRKLSIGIALIAGSKVLMLDEPTPGMDAVSRRAIWDLLQQQKSDRTVLLTTHFMDEADLLGDRIAILAKGELQCCGSSLFLKQKYGAGYHMTL-----------------VKEPHCNPEGISQLVHHHVPNAMLESHAGAELSFILPKESTHRFESLFAKLEKKQKELGIASFGASVTTMEEVFLRVGK 841          

HSP 2 Score: 126.331 bits (316), Expect = 3.088e-28
Identity = 72/197 (36.55%), Postives = 118/197 (59.90%), Query Frame = 1
Query:   13 SYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQDAKK-GRAIILTTHSMEEADILSDRIAIMAKGRLRCIGTSIRLKSKFGTGFIVTVNFTGSNNGQSPLNGDHEVASPHHDAVKQFFETHLDV-----LPKEENKAFLTYVIPHDREAILKKFFVELQDREKELGIADIQVSLTTLEDVFLNIA 585
            +YSGG KR+LS  IALIG+P ++ LDEP+TGMDP+ RR +WD +  A++ G+AI++T+HSMEE + L  R+AIM +G+ +C+G+   LKSKFG+G+ +                         DA+++ F+  +D+     + ++E++  + Y +P   +    K F  L+  +++ G+ D  VS  +LE VFL+ A
Sbjct: 1514 TYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVARARESGKAIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKSKFGSGYSLQAKVRSEGK---------------QDALEE-FKAFVDLTFPGSILEDEHQDMVHYHLP-GCDLSWAKVFGILEKAKEKYGVDDYSVSQISLEQVFLSFA 1693          
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: ABCA1_HUMAN (ATP-binding cassette sub-family A member 1 OS=Homo sapiens GN=ABCA1 PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 1.383e-36
Identity = 84/195 (43.08%), Postives = 118/195 (60.51%), Query Frame = 1
Query:    7 AGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDI-IQDAKKGRAIILTTHSMEEADILSDRIAIMAKGRLRCIGTSIRLKSKFGTGFIVTVNFTGSNNGQSPLNGDHEVASPHHDAVKQFFETHLDVLPKEENKAFLTYVIPHDREAILKKFFVELQDREKELGIADIQVSLTTLEDVFLNIAK 588
            AG+YSGG KR+LS A+ALIG P +V LDEPTTGMDP  RR +W+  +   K+GR+++LT+HSMEE + L  R+AIM  GR RC+G+   LK++FG G+ + V   GSN    P+     +A P               +PKE+++  L Y +P    ++ + F + L   +K L I D  VS TTL+ VF+N AK
Sbjct: 2042 AGNYSGGNKRKLSTAMALIGGPPVVFLDEPTTGMDPKARRFLWNCALSVVKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIVVRIAGSNPDLKPVQDFFGLAFP-------------GSVPKEKHRNMLQYQLPSSLSSLARIFSI-LSQSKKRLHIEDYSVSQTTLDQVFVNFAK 2222          

HSP 2 Score: 153.68 bits (387), Expect = 1.806e-36
Identity = 84/238 (35.29%), Postives = 138/238 (57.98%), Query Frame = 1
Query:    4 RAGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQDAKKGRAIILTTHSMEEADILSDRIAIMAKGRLRCIGTSIRLKSKFGTGFIV-------------------TVNFTGSNNGQSPLNGDHEVASPHH--------DAVKQFFETHLDVLPKEENKAF-LTYVIPHD--REAILKKFFVELQDREKELGIADIQVSLTTLEDVFLNIAKQAELETAAAEGRL 627
            +    SGGM+R+LSVA+A +G  K+VILDEPT G+DP +RR +W+++   ++GR IIL+TH M+EAD+L DRIAI++ G+L C+G+S+ LK++ GTG+ +                   TV++    +  S  + D  + S H          A+      H+      E+    LTYV+P++  +E    + F E+ DR  +LGI+   +S TTLE++FL +A+++ ++   ++G L
Sbjct: 1029 KTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKYRQGRTIILSTHHMDEADVLGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKDVESSLSSCRNSSSTVSYLKKEDSVSQSSSDAGLGSDHESDTLTIDVSAISNLIRKHVSEARLVEDIGHELTYVLPYEAAKEGAFVELFHEIDDRLSDLGISSYGISETTLEEIFLKVAEESGVDAETSDGTL 1266          
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: ABCA1_MOUSE (ATP-binding cassette sub-family A member 1 OS=Mus musculus GN=Abca1 PE=1 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 1.806e-36
Identity = 85/238 (35.71%), Postives = 139/238 (58.40%), Query Frame = 1
Query:    4 RAGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQDAKKGRAIILTTHSMEEADILSDRIAIMAKGRLRCIGTSIRLKSKFGTGFIVTV-------------------------NFTGSNNGQSPLNGDHEVASPHHD--AVKQFFETHLDVLPKEENKAF-LTYVIPHD--REAILKKFFVELQDREKELGIADIQVSLTTLEDVFLNIAKQAELETAAAEGRL 627
            +    SGGM+R+LSVA+A +G  K+VILDEPT G+DP +RR +W+++   ++GR IIL+TH M+EADIL DRIAI++ G+L C+G+S+ LK++ GTG+ +T+                         +    ++  + L  DHE  +   D  A+      H+      E+    LTYV+P++  +E    + F E+ DR  +LGI+   +S TTLE++FL +A+++ ++   ++G L
Sbjct: 1029 KTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKDVESSLSSCRNSSSTVSCLKKEDSVSQSSSDAGLGSDHESDTLTIDVSAISNLIRKHVSEARLVEDIGHELTYVLPYEAAKEGAFVELFHEIDDRLSDLGISSYGISETTLEEIFLKVAEESGVDAETSDGTL 1266          

HSP 2 Score: 147.517 bits (371), Expect = 1.294e-34
Identity = 82/195 (42.05%), Postives = 116/195 (59.49%), Query Frame = 1
Query:    7 AGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDI-IQDAKKGRAIILTTHSMEEADILSDRIAIMAKGRLRCIGTSIRLKSKFGTGFIVTVNFTGSNNGQSPLNGDHEVASPHHDAVKQFFETHLDVLPKEENKAFLTYVIPHDREAILKKFFVELQDREKELGIADIQVSLTTLEDVFLNIAK 588
            A +YSGG KR+LS A+ALIG P +V LDEPTTGMDP  RR +W+  +   K+GR+++LT+HSMEE + L  R+AIM  GR RC+G+   LK++FG G+ + V   GSN    P+     +A P               + KE+++  L Y +P    ++ + F + L   +K L I D  VS TTL+ VF+N AK
Sbjct: 2042 ASNYSGGNKRKLSTAMALIGGPPVVFLDEPTTGMDPKARRFLWNCALSIVKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIVVRIAGSNPDLKPVQEFFGLAFP-------------GSVLKEKHRNMLQYQLPSSLSSLARIFSI-LSQSKKRLHIEDYSVSQTTLDQVFVNFAK 2222          
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: ABCA2_RAT (ATP-binding cassette sub-family A member 2 OS=Rattus norvegicus GN=Abca2 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 3.406e-35
Identity = 87/211 (41.23%), Postives = 123/211 (58.29%), Query Frame = 1
Query:    7 AGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQD-AKKGRAIILTTHSMEEADILSDRIAIMAKGRLRCIGTSIRLKSKFGTGFIVTVNFTGSNNGQSPLNGDHEVASPHHDAVKQFFETHLDVLPKEENKAFLTYVIPHDREAILKKFFVELQDREKELGIADIQVSLTTLEDVFLNIAKQAELETAAAEGRLVTL 636
            AGSYSGG KR+LS AIALIG P  + LDEPTTGMDP  RR +W++I D  K GR+++LT+HSMEE + +  R+AIM  GRLRC+G+   LK++FG G+++TV    S N +              D V+ F     + + KE +   + Y +  +  + L + F +++     LGI D  VS TTL++VF+N AK+        E    TL
Sbjct: 2184 AGSYSGGNKRKLSTAIALIGYPAFIFLDEPTTGMDPKARRFLWNLILDLIKTGRSVVLTSHSMEECEAVCTRLAIMVNGRLRCLGSIQHLKNRFGDGYMITVRTKSSQNVK--------------DVVRFFNRNFPEAMLKERHHTKVQYQLKSEHIS-LAQVFSKMEHVVGVLGIEDYSVSQTTLDNVFVNFAKKQSDNVEQQEAEPSTL 2379          

HSP 2 Score: 136.732 bits (343), Expect = 2.285e-31
Identity = 77/211 (36.49%), Postives = 127/211 (60.19%), Query Frame = 1
Query:   19 SGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQDAKKGRAIILTTHSMEEADILSDRIAIMAKGRLRCIGTSIRLKSKFGTGFIVTVNFTGSNNG-------QSPLNGDHEVASPHHDAVKQFFETHL-DVLPKEENKAFLTYVIPHD--REAILKKFFVELQDREKELGIADIQVSLTTLEDVFLNIAKQAE-LETAAAE 618
            SGGMKR+LSVAIA +G  + +ILDEPT G+DP  RR +WD+I   K GR I+L+TH M+EAD+L DRIAI++ G+L+C G+ + LK  +G G+ +T+    +  G        S  +G  ++++     V QF   H+   L   +    L+Y++P +  ++   ++ F +L+     L ++   +  TTLE+VFL ++++ + LE + A+
Sbjct: 1124 SGGMKRKLSVAIAFVGGSRAIILDEPTAGVDPYARRAIWDLILKYKPGRTILLSTHHMDEADLLGDRIAIISHGKLKCCGSPLFLKGAYGDGYRLTLVKRPAEPGTSQEPGMASSPSGRPQLSNCSEMQVSQFIRKHVASSLLVSDTSTELSYILPSEAVKKGAFERLFQQLEHSLDALHLSSFGLMDTTLEEVFLKVSEEDQSLENSEAD 1334          
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: ABCA2_MOUSE (ATP-binding cassette sub-family A member 2 OS=Mus musculus GN=Abca2 PE=1 SV=4)

HSP 1 Score: 149.443 bits (376), Expect = 3.406e-35
Identity = 84/196 (42.86%), Postives = 120/196 (61.22%), Query Frame = 1
Query:    7 AGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQD-AKKGRAIILTTHSMEEADILSDRIAIMAKGRLRCIGTSIRLKSKFGTGFIVTVNFTGSNNGQSPLNGDHEVASPHHDAVKQFFETHLDVLPKEENKAFLTYVIPHDREAILKKFFVELQDREKELGIADIQVSLTTLEDVFLNIAKQ 591
            AG+YSGG KR+LS AIALIG P  + LDEPTTGMDP  RR +W++I D  K GR+++LT+HSMEE + L  R+AIM  GRLRC+G+   LK++FG G+++TV    S N +              D V+ F     + + KE +   + Y +  +  + L + F +++     LGI D  VS TTL++VF+N AK+
Sbjct: 2184 AGTYSGGNKRKLSTAIALIGYPAFIFLDEPTTGMDPKARRFLWNLILDLIKTGRSVVLTSHSMEECEALCTRLAIMVNGRLRCLGSIQHLKNRFGDGYMITVRTKSSQNVK--------------DVVRFFNRNFPEAMLKERHHTKVQYQLKSEHIS-LAQVFSKMEQVVGVLGIEDYSVSQTTLDNVFVNFAKK 2364          

HSP 2 Score: 137.887 bits (346), Expect = 1.026e-31
Identity = 80/223 (35.87%), Postives = 131/223 (58.74%), Query Frame = 1
Query:   19 SGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQDAKKGRAIILTTHSMEEADILSDRIAIMAKGRLRCIGTSIRLKSKFGTGFIVTVNFTGSNNG-------QSPLNGDHEVASPHHDAVKQFFETHL-DVLPKEENKAFLTYVIPHD--REAILKKFFVELQDREKELGIADIQVSLTTLEDVFLNIAKQAE-LETAAAEGRLVTLNLTSGA 654
            SGGMKR+LSVAIA +G  + +ILDEPT G+DP  RR +WD+I   K GR I+L+TH M+EAD+L DRIAI++ G+L+C G+ + LK  +G G+ +T+    +  G        S  +G   ++S     V QF   H+   L   +    L+Y++P +  ++   ++ F +L+     L ++   +  TTLE+VFL ++++ + LE + A+ +    ++  GA
Sbjct: 1124 SGGMKRKLSVAIAFVGGSRAIILDEPTAGVDPYARRAIWDLILKYKPGRTILLSTHHMDEADLLGDRIAIISHGKLKCCGSPLFLKGAYGDGYRLTLVKQPAEPGTSQEPGLASSPSGCPRLSSCSEPQVSQFIRKHVASSLLVSDTSTELSYILPSEAVKKGAFERLFQQLEHSLDALHLSSFGLMDTTLEEVFLKVSEEDQSLENSEADVKESRKDVLPGA 1346          
BLAST of DY257739 vs. ExPASy Swiss-Prot
Match: ABCA2_HUMAN (ATP-binding cassette sub-family A member 2 OS=Homo sapiens GN=ABCA2 PE=1 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 7.588e-35
Identity = 83/196 (42.35%), Postives = 120/196 (61.22%), Query Frame = 1
Query:    7 AGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQD-AKKGRAIILTTHSMEEADILSDRIAIMAKGRLRCIGTSIRLKSKFGTGFIVTVNFTGSNNGQSPLNGDHEVASPHHDAVKQFFETHLDVLPKEENKAFLTYVIPHDREAILKKFFVELQDREKELGIADIQVSLTTLEDVFLNIAKQ 591
            AG+YSGG KR+LS AIALIG P  + LDEPTTGMDP  RR +W++I D  K GR+++LT+HSMEE + L  R+AIM  GRLRC+G+   LK++FG G+++TV    S + +              D V+ F     + + KE +   + Y +  +  + L + F +++     LGI D  VS TTL++VF+N AK+
Sbjct: 2183 AGTYSGGNKRKLSTAIALIGYPAFIFLDEPTTGMDPKARRFLWNLILDLIKTGRSVVLTSHSMEECEALCTRLAIMVNGRLRCLGSIQHLKNRFGDGYMITVRTKSSQSVK--------------DVVRFFNRNFPEAMLKERHHTKVQYQLKSEHIS-LAQVFSKMEQVSGVLGIEDYSVSQTTLDNVFVNFAKK 2363          

HSP 2 Score: 137.502 bits (345), Expect = 1.339e-31
Identity = 81/229 (35.37%), Postives = 131/229 (57.21%), Query Frame = 1
Query:   19 SGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIQDAKKGRAIILTTHSMEEADILSDRIAIMAKGRLRCIGTSIRLKSKFGTGFIVTV-------------NFTGSNNGQSPLNGDHEVASPHHDAVKQFFETHL-DVLPKEENKAFLTYVIPHD--REAILKKFFVELQDREKELGIADIQVSLTTLEDVFLNIAKQAE-LETAAAEGRLVTLNLTSGA 654
            SGGMKR+LSVAIA +G  + +ILDEPT G+DP  RR +WD+I   K GR I+L+TH M+EAD+L DRIAI++ G+L+C G+ + LK  +G G+ +T+                 S  G++PL+   E+       V QF   H+   L   +    L+Y++P +  ++   ++ F  L+     L ++   +  TTLE+VFL ++++ + LE + A+ +    ++  GA
Sbjct: 1124 SGGMKRKLSVAIAFVGGSRAIILDEPTAGVDPYARRAIWDLILKYKPGRTILLSTHHMDEADLLGDRIAIISHGKLKCCGSPLFLKGTYGDGYRLTLVKRPAEPGGPQEPGLASSPPGRAPLSSCSEL------QVSQFIRKHVASCLLVSDTSTELSYILPSEAAKKGAFERLFQHLERSLDALHLSSFGLMDTTLEEVFLKVSEEDQSLENSEADVKESRKDVLPGA 1346          
The following BLAST results are available for this feature:
BLAST of DY257739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
AB2A_ARATH1.265e-11469.97ABC transporter A family member 2 OS=Arabidopsis t... [more]
AB11A_ARATH5.146e-10867.00ABC transporter A family member 11 OS=Arabidopsis ... [more]
AB9A_ARATH6.721e-10868.23ABC transporter A family member 9 OS=Arabidopsis t... [more]
ABCA3_HUMAN2.786e-3742.42ATP-binding cassette sub-family A member 3 OS=Homo... [more]
ABCA3_MOUSE6.207e-3740.20ATP-binding cassette sub-family A member 3 OS=Mus ... [more]
ABCA1_HUMAN1.383e-3643.08ATP-binding cassette sub-family A member 1 OS=Homo... [more]
ABCA1_MOUSE1.806e-3635.71ATP-binding cassette sub-family A member 1 OS=Mus ... [more]
ABCA2_RAT3.406e-3541.23ATP-binding cassette sub-family A member 2 OS=Ratt... [more]
ABCA2_MOUSE3.406e-3542.86ATP-binding cassette sub-family A member 2 OS=Mus ... [more]
ABCA2_HUMAN7.588e-3542.35ATP-binding cassette sub-family A member 2 OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1AG09ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257739 ID=DY257739; Name=DY257739; organism=Citrus clementina; type=EST; length=1096bp
GTGAGAGCTGGGAGCTACAGTGGAGGAATGAAGCGTCGCCTTAGTGTTGC
CATAGCTCTTATTGGTGATCCAAAGTTGGTCATTCTGGATGAACCGACTA
CTGGAATGGATCCCATTACGAGGAGGCATGTTTGGGATATAATACAAGAT
GCAAAGAAAGGTCGTGCCATTATCCTGACGACACACTCAATGGAAGAAGC
TGACATTCTTAGTGACCGCATAGCTATAATGGCAAAGGGCAGACTCCGCT
GTATTGGAACCTCAATCAGATTAAAGTCAAAGTTTGGTACTGGTTTCATT
GTTACTGTTAATTTCACCGGAAGCAATAATGGACAAAGTCCTCTTAATGG
AGATCATGAAGTTGCAAGTCCTCATCATGATGCAGTGAAGCAGTTCTTTG
AAACTCATTTAGATGTGTTACCAAAAGAGGAGAATAAAGCATTCCTGACA
TATGTCATTCCCCATGATAGAGAGGCGATTTTGAAAAAATTTTTTGTGGA
GCTCCAAGATAGAGAAAAAGAATTGGGTATAGCAGATATTCAAGTAAGTC
TCACAACACTAGAAGATGTTTTCTTGAATATAGCAAAACAGGCAGAGCTA
GAAACTGCTGCTGCTGAAGGAAGGTTGGTCACTCTAAACTTGACATCCGG
GGCATCAGTTGAGATACCTCCAGGAGCAAGGTTTGTGGGGATTCCTGGAA
TGGAATCTGCAGAGAATCCTAGAGGCATTATGGTTGAAGTATACTGGGAG
CAAGATGATACTGGTGCTCTCTGCATTTCCGGCCACTCTCCTGAAAAACC
AATACCCCCTCATGTCGAACTAGATGCTTCTTCAGCTTCGACTTCCCGTG
GAAATTTGTTCGGCCAGACAGGACCAGTTCATGGAAATGTCATCGATCCC
AATCAAATTGGTGACTAACACCCTTTAATAGCTTTTCACGTATTACAATA
TTTTACTGGAATACCAAGTTGTTTTAAGGATTTTGGTAATTTAAAGGATG
TTTTTGTATATCAATGTGAAAATTTTAATTTCTTTTTTCCGTAATGCCAC
CAAAAAAAACAGGGAAAAATTCCCTTTCACATTTTTTTCTTTTAAT
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