DY257748

Overview
NameDY257748
Unique NameDY257748
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1017
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1028 contig Ccv1_Contig1028:1..1017. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257748 vs. ExPASy Swiss-Prot
Match: RM24_YEAST (54S ribosomal protein L24, mitochondrial OS=Saccharomyces cerevisiae GN=MRPL24 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.763e-12
Identity = 44/131 (33.59%), Postives = 67/131 (51.15%), Query Frame = 2
Query:  116 RKVGGEKNLAPGVKESL-----KKCVPDSRI----VMNRAKRGLFAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMDTEMGLYWKTKIEKL 481
            RK+  + N   G  + L     +K  PD +     +  ++ +GL+ G  +QFGN +SE    KTR+ W PNV +K L+S  ++R I +K+T   L+ I K GGID YL K    ++       WK +   L
Sbjct:   30 RKIAKQPNYQVGDAKPLHMPKERKKFPDYKYGESNIFKQSNKGLYGGSFVQFGNNISESKA-KTRKKWLPNVVKKGLWSETLNRKISIKMTAKVLKTISKEGGIDNYLTKEKSARIKELGPTGWKLRYRVL 159          
BLAST of DY257748 vs. ExPASy Swiss-Prot
Match: RL28_MAGSM (50S ribosomal protein L28 OS=Magnetococcus sp. (strain MC-1) GN=rpmB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.888e-11
Identity = 33/71 (46.48%), Postives = 46/71 (64.79%), Query Frame = 2
Query:  206 AKRGLFAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGIDEYLLK 418
            A++    GK  Q GN+VS     KTRR W PN+Q K L+S  + + ++V ++T ALR +D AGG+D YLLK
Sbjct:    2 ARKRTLGGKAPQAGNKVSHSQ-RKTRRQWMPNIQTKALWSITLGQSVKVTISTSALRSVDNAGGLDNYLLK 71          
The following BLAST results are available for this feature:
BLAST of DY257748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RM24_YEAST2.763e-1233.5954S ribosomal protein L24, mitochondrial OS=Saccha... [more]
RL28_MAGSM8.888e-1146.4850S ribosomal protein L28 OS=Magnetococcus sp. (st... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB1BA03ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257748 ID=DY257748; Name=DY257748; organism=Citrus clementina; type=EST; length=1017bp
GGGGGAATCACAGAGATAGAGTGCAGTTTTAACGAAAAACTAGAATCGCA
AAGAAGAGAAGTAGTCATTACACGATATGGCGTTTCGAGGGAAGGAGATG
ATGAAGAAACTAGTGAGGAAGGTAGGGGGAGAGAAGAACTTGGCTCCGGG
AGTAAAAGAATCTCTTAAGAAATGTGTACCCGACAGCAGGATCGTCATGA
ACCGAGCCAAACGCGGTCTCTTCGCTGGCAAACACATCCAGTTCGGCAAT
CGCGTCAGCGAAGATGGCGGTAACAAGACTAGGAGGAATTGGAAGCCAAA
TGTCCAGGAGAAGCGGCTATTTAGTTATATAATGGATCGTCACATTAGAG
TCAAAGTCACAACACATGCACTCCGCTGCATTGACAAGGCAGGGGGGATC
GATGAATACCTGCTAAAGACCCCTTACCACAAGATGGACACAGAAATGGG
TCTTTACTGGAAGACCAAGATTGAGAAGCTTTATGAAGAACTTGGGCAGA
CGGAAGTGGCATTCTTTACACCTGAGGAAGAAGCCAAGCTGGAACAGGAC
TTTAAAGACATGAAACTCGCTCAGAGAGCCGCACGTAGGGAACTCAGAAG
ACAGATGTATGGAGGGTCAAGCAAACAGAAACAAATTGAGCAAGGAAGTG
CAGATACCCAGGAAACTGCTGAGGAAGCAGCAAAAATCCTCAGTGAAGGA
ATTCCAAACGAGTATGCTCCCGAGGATCTGGTTGCCAATTCTTAAGTTTT
GACCTTCTCACTGCTTGGAATGTTGCTCACATTTTTGTTAGTAGCTATCA
GGTTTTGGATTTTAATCTTCTTATATGCTTATTTTTTGAATTGATCGTTT
CGTATTAGGCCTTTCTTTGGGTAAACATTTGGCTGCTGCCCCTAAAAATT
GATTTGATATAGCTGTGGTAGTTTATTCAACCCCGGCCTTGAATAAATTA
CTTGGTGTTAGTTCCTTCGTTTACCCTGTTTAACATGTTATGGAAGGATG
GATGAAAGTTTCTGTTG
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