DY257796

Overview
NameDY257796
Unique NameDY257796
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1273
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257796 vs. ExPASy Swiss-Prot
Match: RHM1_ARATH (Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana GN=RHM1 PE=2 SV=1)

HSP 1 Score: 506.523 bits (1303), Expect = 1.518e-158
Identity = 240/298 (80.54%), Postives = 264/298 (88.59%), Query Frame = 3
Query:    3 LRKTIEWYTQNPDWWGDVSGALLPHPRMLMMPGGRHFDGSEENKAVSSVSTNNIQSRMVVPVSKCS-SPRKPSMKFLIYGRTGWIXXXXXXXXXXXXIPFEYGKGRLEDRSSLIADVQSVKPTHGFNAAGVTGRPNVDWCESHKTDTIRTNVAGTLTLADVCREHGILMMNYATGCIFEYDAAHPEGSGIGYKEEDTPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMGKRNLRGIWNFTNPGVVSHNEILRCTR 893
            L+KT++WYTQNP+WWGDVSGALLPHPRMLMMPGGRHFDGSE+N   +++S    Q+ MVVP  + + +P+KPS+KFLIYG+TGWI            I +EYGKGRLEDRSSL+ D+QSVKPTH FN+AGVTGRPNVDWCESHKT+TIR NVAGTLTLADVCREHG+LMMN+ATGCIFEYD  HPEGSGIG+KEEDTPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEM KRNL+GIWNFTNPGVVSHNEIL   R
Sbjct:  312 LKKTMDWYTQNPEWWGDVSGALLPHPRMLMMPGGRHFDGSEDNSLAATLSEKPSQTHMVVPSQRSNGTPQKPSLKFLIYGKTGWIGGLLGKICDKQGIAYEYGKGRLEDRSSLLQDIQSVKPTHVFNSAGVTGRPNVDWCESHKTETIRANVAGTLTLADVCREHGLLMMNFATGCIFEYDDKHPEGSGIGFKEEDTPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLKGIWNFTNPGVVSHNEILEMYR 609          

HSP 2 Score: 73.1738 bits (178), Expect = 1.518e-158
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 2
Query:  878 LEMYKKYINPEFSGVNFTLKEQAKVIFPPRTNTKMDASKLKKEFP 1012
            LEMY+ YINPEF   NFTL+EQAKVI  PR+N +MDASKLKKEFP
Sbjct:  605 LEMYRDYINPEFKWANFTLEEQAKVIVAPRSNNEMDASKLKKEFP 649          
BLAST of DY257796 vs. ExPASy Swiss-Prot
Match: RHM3_ARATH (Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana GN=RHM3 PE=2 SV=1)

HSP 1 Score: 481.1 bits (1237), Expect = 1.591e-149
Identity = 230/298 (77.18%), Postives = 255/298 (85.57%), Query Frame = 3
Query:    3 LRKTIEWYTQNPDWWGDVSGALLPHPRMLMMPGGRHFDGSEENKAVSSVSTNNIQSRMVVPVSKCSSPRKPSMKFLIYGRTGWIXXXXXXXXXXXXIPFEYGKGRLEDRSSLIADVQSVKPTHGFNAAGVTGRPNVDWCESHKTDTIRTNVAGTLTLADVCREHGILMMNYATGCIFEYDAAHPEGSGIGYKEEDTPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMGKRNLRGIWNFTNPGVVSHNEILRCTRS 896
            LRKT+EWYT+NP+WWGDVSGALLPHPRMLMMPG RH DGS+E+K      T  +    V P     S  K S+KFLIYG+TGW+            IP+EYGKGRLEDR+SLIAD++S+KP+H FNAAG+TGRPNVDWCESHKT+TIR NVAGTLTLADVCRE+ +LMMN+ATGCIFEYDAAHPEGSGIG+KEED PNFTGSFYSKTKAMVEELL+E+DNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMT+LDELLPISIEM KRNLRGIWNFTNPGVVSHNEIL   +S
Sbjct:  312 LRKTMEWYTENPEWWGDVSGALLPHPRMLMMPGDRHSDGSDEHKNADGNQTFTV----VTPTKAGCSGDKRSLKFLIYGKTGWLGGLLGKLCEKQGIPYEYGKGRLEDRASLIADIRSIKPSHVFNAAGLTGRPNVDWCESHKTETIRVNVAGTLTLADVCRENDLLMMNFATGCIFEYDAAHPEGSGIGFKEEDKPNFTGSFYSKTKAMVEELLREFDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTILDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKS 605          

HSP 2 Score: 68.5514 bits (166), Expect = 1.591e-149
Identity = 36/65 (55.38%), Postives = 43/65 (66.15%), Query Frame = 2
Query:  878 LEMYKKYINPEFSGVNFTLKEQAKVIFPPRTNTKMDASKLKKEFP*FAFPPGIPLIKLVFEPQQK 1072
            LEMYK YI P+F   NF L+EQAKVI  PR+N +MD +KL KEFP         LIK VFEP ++
Sbjct:  600 LEMYKSYIEPDFKWSNFNLEEQAKVIVAPRSNNEMDGAKLSKEFPEMLSIKD-SLIKYVFEPNKR 663          
BLAST of DY257796 vs. ExPASy Swiss-Prot
Match: RHM2_ARATH (Probable rhamnose biosynthetic enzyme 2 OS=Arabidopsis thaliana GN=RHM2 PE=1 SV=1)

HSP 1 Score: 473.396 bits (1217), Expect = 4.686e-146
Identity = 228/293 (77.82%), Postives = 252/293 (86.01%), Query Frame = 3
Query:    3 LRKTIEWYTQNPDWWGDVSGALLPHPRMLMMPGGRHFDGSEENKAVSSVSTNNIQSRMVVPVSKCSSPRKPSMKFLIYGRTGWIXXXXXXXXXXXXIPFEYGKGRLEDRSSLIADVQSVKPTHGFNAAGVTGRPNVDWCESHKTDTIRTNVAGTLTLADVCREHGILMMNYATGCIFEYDAAHPEGSGIGYKEEDTPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMGKRNLRGIWNFTNPGVVSHNEIL 881
            L+KT++WYTQNP+WWGDVSGALLPHPRMLMMPGGR  DGS E K VSS   N +Q+  VV      S  K S+KFLIYG+TGW+            I +EYGKGRLEDR+SL+AD++S+KPTH FNAAG+TGRPNVDWCESHK +TIR NVAGTLTLADVCRE+ +LMMN+ATGCIFEYDA HPEGSGIG+KEED PNF GSFYSKTKAMVEELL+E+DNVCTLRVRMPISSDLNNPRNFITKISRYNKVV+IPNSMTVLDELLPISIEM KRNLRGIWNFTNPGVVSHNEIL
Sbjct:  314 LKKTMDWYTQNPEWWGDVSGALLPHPRMLMMPGGRLSDGSSEKKDVSS---NTVQTFTVVTPKNGDSGDKASLKFLIYGKTGWLGGLLGKLCEKQGITYEYGKGRLEDRASLVADIRSIKPTHVFNAAGLTGRPNVDWCESHKPETIRVNVAGTLTLADVCRENDLLMMNFATGCIFEYDATHPEGSGIGFKEEDKPNFFGSFYSKTKAMVEELLREFDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVDIPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVVSHNEIL 603          

HSP 2 Score: 64.6994 bits (156), Expect = 4.686e-146
Identity = 35/65 (53.85%), Postives = 42/65 (64.62%), Query Frame = 2
Query:  878 LEMYKKYINPEFSGVNFTLKEQAKVIFPPRTNTKMDASKLKKEFP*FAFPPGIPLIKLVFEPQQK 1072
            LEMYK YI P F   NFT++EQAKVI   R+N +MD SKL KEFP         L+K VFEP ++
Sbjct:  603 LEMYKNYIEPGFKWSNFTVEEQAKVIVAARSNNEMDGSKLSKEFP-EMLSIKESLLKYVFEPNKR 666          
BLAST of DY257796 vs. ExPASy Swiss-Prot
Match: YL780_MIMIV (Uncharacterized protein L780 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L780 PE=4 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 4.426e-37
Identity = 87/231 (37.66%), Postives = 130/231 (56.28%), Query Frame = 3
Query:  219 MKFLIYGRTGWIXXXXXXXXXXXXIPFEYGKGRLEDRSSLIADVQSVKPTHGFNAAGVTGRPN---VDWCESHK--TDTIRTNVAGTLTLADVCREHGILMMNYATGCIFEYDAAHPEGSGIGYKEEDTPNFTGSFYSKTKAMVEELLKEYDN-VCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMGKRNLRGIWNFTNPGVVSHNEILRCTR 893
            MK+LI+G  GWI                  + R +D S++  ++  +KP    +  G T  P    +D+ E      + ++ N+ G L LA +C+++ I +    TGCIFE    +      G+ E D PNF GS YS  K   + L+  +DN V  LR+RMPI+ +  NPR+FITKI  Y+++ +IPNSMT+LD+++P+ I+M +    G +NFTNPG+VSHNEIL   R
Sbjct:    1 MKWLIFGNKGWIGSMVSKILEQQGEQVVGAQSRADDESAVEREISEIKPDRVMSFIGRTHGPGYSTIDYLEQSGKLVENVKDNLYGPLCLAFICQKYNIHLTYLGTGCIFE-GQNNFSADEKGFTENDKPNFFGSSYSVVKGFTDRLMHFFDNDVLNLRIRMPITIE-QNPRSFITKILSYSRICSIPNSMTILDQMIPVMIDMARNKTTGTFNFTNPGLVSHNEILSLIR 229          
The following BLAST results are available for this feature:
BLAST of DY257796 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RHM1_ARATH1.518e-15880.54Probable rhamnose biosynthetic enzyme 1 OS=Arabido... [more]
RHM3_ARATH1.591e-14977.18Probable rhamnose biosynthetic enzyme 3 OS=Arabido... [more]
RHM2_ARATH4.686e-14677.82Probable rhamnose biosynthetic enzyme 2 OS=Arabido... [more]
YL780_MIMIV4.426e-3737.66Uncharacterized protein L780 OS=Acanthamoeba polyp... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB1CA06ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257796 ID=DY257796; Name=DY257796; organism=Citrus clementina; type=EST; length=1273bp
GGTTGAGGAAGACTATTGAGTGGTACACTCAGAACCCTGATTGGTGGGGT
GATGTCTCTGGTGCTCTGCTTCCTCATCCAAGAATGCTGATGATGCCTGG
TGGGAGACATTTTGATGGGTCTGAAGAGAACAAAGCGGTGTCCAGTGTCT
CAACAAATAACATTCAGTCCCGTATGGTGGTTCCAGTTTCCAAATGCAGC
TCTCCTCGAAAACCATCCATGAAGTTTTTGATCTATGGCAGGACAGGATG
GATTGGAGGTCTACTAGGAAAGTTGTGTGAGAAAGAGGGTATTCCATTTG
AATATGGAAAAGGACGTTTGGAGGATCGTTCATCTCTCATTGCAGATGTT
CAGAGTGTTAAACCCACACATGGTTTCAATGCTGCTGGTGTTACTGGCAG
ACCCAATGTTGATTGGTGTGAATCTCATAAAACTGACACCATTCGCACCA
ATGTTGCTGGAACCTTAACCTTGGCAGATGTTTGCAGAGAACATGGGATC
TTGATGATGAATTATGCTACCGGTTGCATATTTGAGTATGATGCTGCTCA
TCCTGAGGGCTCTGGCATTGGGTATAAAGAGGAAGATACACCCAATTTTA
CTGGTTCTTTCTACTCAAAAACCAAGGCCATGGTTGAAGAGCTGTTGAAA
GAATACGACAATGTTTGCACTCTCAGAGTCCGAATGCCAATATCTTCTGA
CCTAAACAACCCCCGCAACTTCATTACCAAGATTTCTCGTTATAACAAGG
TGGTCAACATTCCAAACAGTATGACTGTTTTGGATGAACTTCTCCCCATT
TCAATTGAGATGGGCAAGCGTAACTTGAGGGGTATTTGGAACTTCACAAA
CCCTGGGGTTGTGAGCCACAATGAAATCTTGAGATGTACAAGAAGTACAT
TAACCCAGAATTCAGTGGGGTGAACTTCACATTAAAAGAGCAAGCAAAGG
TGATATTCCCCCCCAGAACCAACACCAAGATGGATGCCTCTAAATTGAAG
AAGGAATTCCCCTGATTTGCTTTTCCTCCAGGGATTCCCTTGATTAAATT
AGTCTTTGAACCCCAACAAAAAAAACCTAGGGGTAACTTTAACCCACCTT
TTCCATTGTAGGGGGCCCTCTTTGGTTTGGCCCAACCATTTTTCTGCCCA
TTAAAATAAAAAGGGTTTGGGGAAAATCCTTTTTAACTGGGTTAAACCCC
CCTTTTTTCCTCTTTTTTTTTTTTTTTGGGGGGTAAAAACCCCTCTTTTT
TAATTATTTTTTCGGGGGCCCCC
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