DY257810

Overview
NameDY257810
Unique NameDY257810
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1012
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9989 contig Ccv1_Contig9989:4..1015. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257810 vs. ExPASy Swiss-Prot
Match: SST2_SCHPO (AMSH-like protease sst2 OS=Schizosaccharomyces pombe GN=sst2 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 9.174e-16
Identity = 45/96 (46.88%), Postives = 58/96 (60.42%), Query Frame = 3
Query:  552 THPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQDATRKHGIFRLTSPGGMSVIRQCQQRGFXXXXXXXXXXXIYKPCTDVYMNPNLKFDVIDLR 839
            THPTQ+CFMSS+D+HTH SYQ+MLPE++AIVMAP   T   GIFRL  P G+  I +C++ G            + +P        N K  V+DLR
Sbjct:  342 THPTQTCFMSSVDLHTHCSYQLMLPEAIAIVMAPSKNT--SGIFRLLDPEGLQTIVKCRKPGLFHPHEGKVYTMVAQP--GHVREINSKLQVVDLR 433          
BLAST of DY257810 vs. ExPASy Swiss-Prot
Match: D1039_DICDI (Probable ubiquitin thiolesterase DG1039 OS=Dictyostelium discoideum GN=DG1039 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.263e-13
Identity = 32/63 (50.79%), Postives = 47/63 (74.60%), Query Frame = 3
Query:  552 THPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQDATRKHGIFRLTSPGGMSVIRQCQQRGF 740
            THPTQ CF+S++DVHTH SYQ +L E++A+V++P  A    GIFRLT P G+  +++C+ + F
Sbjct:  616 THPTQDCFLSAVDVHTHCSYQYLLQEAIAVVISPM-ANPNFGIFRLTDPPGLETVQKCKLKSF 677          
BLAST of DY257810 vs. ExPASy Swiss-Prot
Match: STALP_MOUSE (AMSH-like protease OS=Mus musculus GN=Stambpl1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 7.269e-13
Identity = 41/96 (42.71%), Postives = 63/96 (65.62%), Query Frame = 3
Query:  552 THPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQDATRKHGIFRLTSPGGMSVIRQCQQRGFXXXXXXXXXXXIYKPCTDVYMNPNLKFDVIDLR 839
            THPTQ+ F+SS+D+HTH SYQ+MLPE++AIV +P+   +  GIFRLT+  GM  +  C+++GF           ++  C+ V +  ++K  V+DLR
Sbjct:  348 THPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKH--KDTGIFRLTN-AGMLEVSTCKKKGF---HPHTKDPKLFSICSHVLVK-DIKTTVLDLR 436          
BLAST of DY257810 vs. ExPASy Swiss-Prot
Match: STALP_HUMAN (AMSH-like protease OS=Homo sapiens GN=STAMBPL1 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.240e-12
Identity = 41/96 (42.71%), Postives = 62/96 (64.58%), Query Frame = 3
Query:  552 THPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQDATRKHGIFRLTSPGGMSVIRQCQQRGFXXXXXXXXXXXIYKPCTDVYMNPNLKFDVIDLR 839
            THPTQ+ F+SS+D+HTH SYQ+MLPE++AIV +P+   +  GIFRLT+  GM  +  C+++GF           ++  C  V +  ++K  V+DLR
Sbjct:  348 THPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKH--KDTGIFRLTN-AGMLEVSACKKKGF---HPHTKEPRLFSICKHVLVK-DIKIIVLDLR 436          
BLAST of DY257810 vs. ExPASy Swiss-Prot
Match: STABP_XENLA (STAM-binding protein-like OS=Xenopus laevis GN=stambp PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.712e-12
Identity = 35/63 (55.56%), Postives = 49/63 (77.78%), Query Frame = 3
Query:  552 THPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQDATRKHGIFRLTSPGGMSVIRQCQQRGF 740
            THPTQ+ F+SS+D+HTH SYQ+MLPES+AIV +P+   ++ G F+LT   GM  I +C+Q+GF
Sbjct:  328 THPTQTAFLSSVDLHTHCSYQMMLPESIAIVCSPK--FQETGFFKLTD-YGMKEIGECRQKGF 387          
BLAST of DY257810 vs. ExPASy Swiss-Prot
Match: STABP_DANRE (STAM-binding protein-like OS=Danio rerio GN=stambp PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 6.154e-12
Identity = 36/63 (57.14%), Postives = 47/63 (74.60%), Query Frame = 3
Query:  552 THPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQDATRKHGIFRLTSPGGMSVIRQCQQRGF 740
            THPTQ+ F+SS+D+HTH SYQ+MLPES+AIV +P+    + G FRLT   GM  +  C+QRGF
Sbjct:  330 THPTQTAFLSSVDLHTHCSYQMMLPESIAIVCSPK--FNETGYFRLTD-YGMDDVGTCKQRGF 389          
BLAST of DY257810 vs. ExPASy Swiss-Prot
Match: STABP_HUMAN (STAM-binding protein OS=Homo sapiens GN=STAMBP PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 8.037e-12
Identity = 35/63 (55.56%), Postives = 48/63 (76.19%), Query Frame = 3
Query:  552 THPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQDATRKHGIFRLTSPGGMSVIRQCQQRGF 740
            THPTQ+ F+SS+D+HTH SYQ+MLPESVAIV +P+   ++ G F+LT   G+  I  C+Q+GF
Sbjct:  336 THPTQTAFLSSVDLHTHCSYQMMLPESVAIVCSPK--FQETGFFKLTD-HGLEEISSCRQKGF 395          
BLAST of DY257810 vs. ExPASy Swiss-Prot
Match: STALP_PONAB (AMSH-like protease OS=Pongo abelii GN=STAMBPL1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.050e-11
Identity = 40/96 (41.67%), Postives = 61/96 (63.54%), Query Frame = 3
Query:  552 THPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQDATRKHGIFRLTSPGGMSVIRQCQQRGFXXXXXXXXXXXIYKPCTDVYMNPNLKFDVIDLR 839
            THPTQ+ F+SS+D+HTH SYQ+ML E++AIV +P+   +  GIFRLT+  GM  +  C+++GF           ++  C  V +  ++K  V+DLR
Sbjct:  348 THPTQTAFLSSVDLHTHCSYQLMLSEAIAIVCSPKH--KDTGIFRLTN-AGMLEVSACKKKGF---HPHTKEPRLFSICKHVLVK-DIKIIVLDLR 436          
BLAST of DY257810 vs. ExPASy Swiss-Prot
Match: STABP_RAT (STAM-binding protein OS=Rattus norvegicus GN=Stambp PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.790e-11
Identity = 34/63 (53.97%), Postives = 48/63 (76.19%), Query Frame = 3
Query:  552 THPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQDATRKHGIFRLTSPGGMSVIRQCQQRGF 740
            THPTQ+ F+SS+D+HTH SYQ+MLPES+AIV +P+   ++ G F+LT   G+  I  C+Q+GF
Sbjct:  336 THPTQTAFLSSVDLHTHCSYQMMLPESIAIVCSPK--FQETGFFKLTD-YGLQEISTCRQKGF 395          
BLAST of DY257810 vs. ExPASy Swiss-Prot
Match: STABP_MOUSE (STAM-binding protein OS=Mus musculus GN=Stambp PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.790e-11
Identity = 34/63 (53.97%), Postives = 48/63 (76.19%), Query Frame = 3
Query:  552 THPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQDATRKHGIFRLTSPGGMSVIRQCQQRGF 740
            THPTQ+ F+SS+D+HTH SYQ+MLPES+AIV +P+   ++ G F+LT   G+  I  C+Q+GF
Sbjct:  336 THPTQTAFLSSVDLHTHCSYQMMLPESIAIVCSPK--FQETGFFKLTD-YGLQEISTCRQKGF 395          
The following BLAST results are available for this feature:
BLAST of DY257810 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
SST2_SCHPO9.174e-1646.88AMSH-like protease sst2 OS=Schizosaccharomyces pom... [more]
D1039_DICDI3.263e-1350.79Probable ubiquitin thiolesterase DG1039 OS=Dictyos... [more]
STALP_MOUSE7.269e-1342.71AMSH-like protease OS=Mus musculus GN=Stambpl1 PE=... [more]
STALP_HUMAN1.240e-1242.71AMSH-like protease OS=Homo sapiens GN=STAMBPL1 PE=... [more]
STABP_XENLA4.712e-1255.56STAM-binding protein-like OS=Xenopus laevis GN=sta... [more]
STABP_DANRE6.154e-1257.14STAM-binding protein-like OS=Danio rerio GN=stambp... [more]
STABP_HUMAN8.037e-1255.56STAM-binding protein OS=Homo sapiens GN=STAMBP PE=... [more]
STALP_PONAB1.050e-1141.67AMSH-like protease OS=Pongo abelii GN=STAMBPL1 PE=... [more]
STABP_RAT1.790e-1153.97STAM-binding protein OS=Rattus norvegicus GN=Stamb... [more]
STABP_MOUSE1.790e-1153.97STAM-binding protein OS=Mus musculus GN=Stambp PE=... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB1CD09ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257810 ID=DY257810; Name=DY257810; organism=Citrus clementina; type=EST; length=1012bp
AGATAAGAATTTGCCGGTATATGGGAGTTGTTATGATCTCTGTAGATTTA
TTTAGCCTTTTAAATGCCATAAATTGAACGGGTTTCTAGATTTTAAATGC
CATAAATTGAATGGTGGTGATATTAGGGTCTGATAATGCTTAGGTAGATA
TCACAATAAGACTTCTATTGCAATTGGCAATAACTGCAATAACTGGTTTG
TAATCAAGATAATATTTAACATATCAGTTAAGCTAATGCCAATTCACTGA
GGAATAGCAACCTATCATGAAATGCATGATTAATACTGCTTATTATGCTG
ATGCTCTAAACCAATATTTATATTGATAATTTTTATTAGTATTATCTACA
TGGTTTAAGGAAAGGTCATACTTGGATGTATATTCAATTTGGGATAAGTT
CTGCAAGGTTTTTATGTCTCTTTTGTTTTGTGATTGTCCAAGTTTAATTA
CTTGCAGTTATTTGTGTACTTTATAATGTTTGAAGATGATTGATTATATA
TTATGTAAGTTGTGCTGATGAATTAATTATCTACGATGGTGCAATTTCCA
GACGCATCCTACGCAGTCTTGCTTCATGTCATCGATTGATGTTCACACCC
ACTACTCATATCAGATTATGCTGCCGGAATCTGTTGCAATTGTCATGGCG
CCTCAAGATGCTACAAGAAAGCATGGAATTTTTCGTTTGACAAGCCCAGG
TGGCATGTCAGTAATAAGACAGTGTCAGCAACGTGGCTTTCATCCACACG
ATCCCCCTCCTGATGGTGGGCCCATTTATAAGCCTTGTACAGATGTATAT
ATGAATCCCAATCTAAAATTTGATGTCATTGATCTCCGGTGATTTGCATC
TTGCTGTGTGGATAGGTAATTCTTTTTCTGATCCAATTGTTGATTAATCA
TTGTTATACACTTGTATGCTTTACCAATAGGGTTGGGCGTTTAACACGTG
AAAAATCATTTGAAAATGGAAAAGATATTTTCTAGGCCAATGTATATGAA
ATGCATTATTTC
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