DY257827

Overview
NameDY257827
Unique NameDY257827
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10018 contig Ccv1_Contig10018:4..719. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_BORGA (tRNA-specific 2-thiouridylase mnmA OS=Borrelia garinii GN=mnmA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.855e-24
Identity = 46/128 (35.94%), Postives = 80/128 (62.50%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVILE 384
            G+WF+T+GQR+G++L  GPW+V+EKD++ N++++S N     + +R F V  + W++G+ P +    + K+RHG   Y+C L +        N+  + L++ D G++ GQFA FY+ T C+G   I +
Sbjct:  231 GYWFFTVGQRRGIKLSNGPWFVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWINGM-PSDFENFKIKIRHGEKKYSCKLRLI-----TNNLIEIFLNKKDHGISPGQFAIFYKNTECLGGAKIFK 352          
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_BORAP (tRNA-specific 2-thiouridylase mnmA OS=Borrelia afzelii (strain PKo) GN=mnmA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.855e-24
Identity = 46/128 (35.94%), Postives = 80/128 (62.50%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVILE 384
            G+WF+T+GQR+G++L  GPW+V+EKD++ N++++S N     + +R F V  + W++G  P +    + K+RHG   Y+C L +       +N+  + L++ D G++ GQFA FY+ T C+G   I +
Sbjct:  231 GYWFFTVGQRRGIKLSNGPWFVIEKDLEKNIIYISHNENYSKQAKRKFLVHEIHWING-TPSDFENFKIKIRHGEKKYSCKLKLI-----AKNLIEISLNKKDYGISPGQFAIFYKNTECLGGAKIFK 352          
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_BORBZ (tRNA-specific 2-thiouridylase mnmA OS=Borrelia burgdorferi (strain ZS7) GN=mnmA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.605e-23
Identity = 46/128 (35.94%), Postives = 78/128 (60.94%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVILE 384
            G+WF+T+GQR+G++L  GPW+V+EKD++ N++++S N     + +R F V  + W++   P      + K+RHG   Y+C L +        N+  + L++ DQG++ GQFA FY+ T C+G   I +
Sbjct:  231 GYWFFTVGQRRGIKLSNGPWFVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWIND-TPTNFENFKIKIRHGEKKYSCKLKLI-----TNNLMEISLNKKDQGISPGQFAIFYKNTECLGGAKIFK 352          
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_BORBU (tRNA-specific 2-thiouridylase mnmA OS=Borrelia burgdorferi GN=mnmA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.605e-23
Identity = 46/128 (35.94%), Postives = 78/128 (60.94%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVILE 384
            G+WF+T+GQR+G++L  GPW+V+EKD++ N++++S N     + +R F V  + W++   P      + K+RHG   Y+C L +        N+  + L++ DQG++ GQFA FY+ T C+G   I +
Sbjct:  231 GYWFFTVGQRRGIKLSNGPWFVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWIND-TPTNFENFKIKIRHGEKKYSCKLKLI-----TNNLMEISLNKKDQGISPGQFAIFYKNTECLGGAKIFK 352          
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_BORRA (tRNA-specific 2-thiouridylase mnmA OS=Borrelia recurrentis (strain A1) GN=mnmA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.520e-20
Identity = 48/129 (37.21%), Postives = 76/129 (58.91%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVILES 387
            G+WF+TIGQR+G++L  GPW+V EKD++NN++++S +     + +  F V    W++   P + + L  K+RHG     C   IE ++D    I  V L E D G++ GQF  FY+   C+G   IL++
Sbjct:  231 GYWFFTIGQRKGIKLSHGPWFVTEKDIQNNIIYISNSTNYLKQGKEQFLVHKTNWIN--KPLKNNNLSAKIRHGEKKIKCK--IETLKD---EIIRVNLEEKDYGISPGQFCIFYKEDECLGGAKILKT 352          
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_BORT9 (tRNA-specific 2-thiouridylase mnmA OS=Borrelia turicatae (strain 91E135) GN=mnmA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.598e-20
Identity = 47/129 (36.43%), Postives = 73/129 (56.59%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVILES 387
            G+WF+TIGQR+G++L  GPW+V EKD++NN++++S +     + ++ F V    W++   P     L  K+RHG     C      +E    +I  V L E D G++ GQF  FYQ   C+G   IL++
Sbjct:  231 GYWFFTIGQRKGIKLSHGPWFVTEKDIQNNIIYISNSINYLKQGKQQFLVHKTNWIN--KPLNNGDLSAKIRHGEKKIKCK-----IEMLKNDIIKVDLEEKDYGISPGQFCIFYQEDECLGGAKILKT 352          
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_BORDL (tRNA-specific 2-thiouridylase mnmA OS=Borrelia duttonii (strain Ly) GN=mnmA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.598e-20
Identity = 48/129 (37.21%), Postives = 75/129 (58.14%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVILES 387
            G+WF+TIGQR+G++L  GPW+V EKD++NN++++S +     + +  F V    W++   P +   L  K+RHG     C   IE ++D    I  V L E D G++ GQF  FY+   C+G   IL++
Sbjct:  231 GYWFFTIGQRKGIKLSHGPWFVTEKDIQNNIIYISNSTNYLKQGKEQFLVHKTNWIN--KPLKNDNLSAKIRHGEKKIKCK--IETLKD---EIIRVNLEEKDYGISPGQFCIFYKEDECLGGAKILKT 352          
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_BORHD (tRNA-specific 2-thiouridylase mnmA OS=Borrelia hermsii (strain DAH) GN=mnmA PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 7.843e-20
Identity = 47/129 (36.43%), Postives = 72/129 (55.81%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVILES 387
            G+WF+TIGQR+G++L  GPW+V EKD++NN++++S +     + +  F V    W++   P     L  K+RHG     C      +E    +I  V L E D G++ GQF  FYQ   C+G   IL++
Sbjct:  231 GYWFFTIGQRKGIKLSHGPWFVTEKDIQNNIIYISNSVNYLAQGKHQFLVHKTNWIN--KPVNNIDLSAKIRHGEKKIKCK-----IEMLKNDIIKVDLEEKDYGISPGQFCIFYQEDECLGGAQILQT 352          
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA2_BACFR (tRNA-specific 2-thiouridylase mnmA 2 OS=Bacteroides fragilis GN=mnmA2 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.116e-17
Identity = 51/131 (38.93%), Postives = 76/131 (58.02%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEIS---RLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QGTRCIGSGVI 378
            G+WF+TIGQR+GL L GGPW+VV+KD+++N+++VS  Y +  +    FR+    +++  P E  +    +  K+RH P F    L+  H E+G   I+    SE  QG+A GQF   Y  +   C GSG I
Sbjct:  228 GYWFHTIGQRKGLGLGGGPWFVVKKDIQDNIIYVSHGYDAEQQYGYEFRMKDFNFITDNPWEGSTGEEEVTFKIRHTPEFIKGRLL--HDEEGYRIIS----SEKLQGIAPGQFGVIYDAESRVCFGSGEI 352          
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA2_BACFN (tRNA-specific 2-thiouridylase mnmA 2 OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=mnmA2 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.116e-17
Identity = 51/131 (38.93%), Postives = 76/131 (58.02%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEIS---RLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QGTRCIGSGVI 378
            G+WF+TIGQR+GL L GGPW+VV+KD+++N+++VS  Y +  +    FR+    +++  P E  +    +  K+RH P F    L+  H E+G   I+    SE  QG+A GQF   Y  +   C GSG I
Sbjct:  228 GYWFHTIGQRKGLGLGGGPWFVVKKDIQDNIIYVSHGYDAEQQYGYEFRMKDFNFITDNPWEGSTGEEEVTFKIRHTPEFIKGRLL--HDEEGYRIIS----SEKLQGIAPGQFGVIYDAESRVCFGSGEI 352          
The following BLAST results are available for this feature:
BLAST of DY257827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
MNMA_BORGA6.855e-2435.94tRNA-specific 2-thiouridylase mnmA OS=Borrelia gar... [more]
MNMA_BORAP6.855e-2435.94tRNA-specific 2-thiouridylase mnmA OS=Borrelia afz... [more]
MNMA_BORBZ2.605e-2335.94tRNA-specific 2-thiouridylase mnmA OS=Borrelia bur... [more]
MNMA_BORBU2.605e-2335.94tRNA-specific 2-thiouridylase mnmA OS=Borrelia bur... [more]
MNMA_BORRA3.520e-2037.21tRNA-specific 2-thiouridylase mnmA OS=Borrelia rec... [more]
MNMA_BORT94.598e-2036.43tRNA-specific 2-thiouridylase mnmA OS=Borrelia tur... [more]
MNMA_BORDL4.598e-2037.21tRNA-specific 2-thiouridylase mnmA OS=Borrelia dut... [more]
MNMA_BORHD7.843e-2036.43tRNA-specific 2-thiouridylase mnmA OS=Borrelia her... [more]
MNMA2_BACFR8.116e-1738.93tRNA-specific 2-thiouridylase mnmA 2 OS=Bacteroide... [more]
MNMA2_BACFN8.116e-1738.93tRNA-specific 2-thiouridylase mnmA 2 OS=Bacteroide... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CH01ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257827 ID=DY257827; Name=DY257827; organism=Citrus clementina; type=EST; length=716bp
GGATTTTGGTTCTACACAATCGGTCAACGCCAAGGGCTACGTCTTCCTGG
AGGACCCTGGTATGTTGTTGAGAAGGATGTTAAGAACAATGTAGTGTTTG
TGTCGAGAAATTATTATTCGTTTGACAAGAAAAGACGCCTATTTCGTGTT
GGCTCTTTGAAATGGCTCAGTGGATTGCCTCCAGAGGAAATCAGTCGGCT
TCAGTGTAAGGTCAGACATGGTCCTGGTTTCTACAATTGCAATTTGATGA
TTGAACATGTTGAAGATGGTGGTGAGAACATTGCAGTTGTCCAGTTATCA
GAAGACGATCAAGGACTGGCAGCCGGCCAGTTTGCTGCCTTCTACCAGGG
AACAAGATGCATTGGCTCTGGTGTGATTTTGGAATCTTGGGATGATCAGG
GTTTCCCTGTATGTGAAAAAGCTCTCGAGATTGCAAGAATGGAAGATAAA
TCAAAGCTTGGGAAACCCATAAAGATAAAGGTAAAACCGGAGACTCCTGA
GGAGTTTAATTCTAATAAAGGTGTTCAAAGTAGTAGAAACTTGGTTAATG
CTCAAAACAGCATAGCAGAGAAAAGCAATACAACATCTCAAGAAGAAGCA
ATTTCTAGATTCCCGATGAATTGGTTGCAAAAGCTTAGAGAAAAATGGCC
ACGTATATTGTAGCTTCCATCATTTGTAGGCTTCAGCTTTGCTATTTCAT
GAGATGCCTATTCTTT
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