DY257829

Overview
NameDY257829
Unique NameDY257829
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1326
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY257829_ssr144 microsatellite DY257829_ssr144:144..161. BLAST: Citrus ESTs to Prunus persica proteins V1
DY257829_ssr267 microsatellite DY257829_ssr267:267..278. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_MALDO (Eukaryotic translation initiation factor 2 subunit beta OS=Malus domestica PE=2 SV=2)

HSP 1 Score: 415.231 bits (1066), Expect = 4.288e-115
Identity = 209/270 (77.41%), Postives = 225/270 (83.33%), Query Frame = 3
Query:   75 MTDENQVDVKDEV-AELAPFDPTXXXXXXXVVIQDPSDDSVDKLAEITETSSVSEGLESTFTGLXXXXXXPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFKARVGRRNAG 881
            M D+NQ +VKDEV A++APFDPT       VVIQD +DDSV KLAE  E  + SEG ESTF GL      P+E+S+LN+E GDA +DL+   GED+E +G       YPWEGSDRDY YEELL RVF ILRENNP+LAGDRRRTVMRPPQVLREGTKK VFVNFMDLCKTMHRQPDHVM FLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGC+SPDTILSKENRLFFLRCEKCGSGRSVAP KAGF ARVGRRNAG
Sbjct:    1 MADDNQNEVKDEVVADIAPFDPTKKKKKKEVVIQDTTDDSVGKLAEKAEACTASEGQESTFAGLKKKKKKPIETSILNEESGDAVEDLNERTGEDEEGEGIVLETPSYPWEGSDRDYTYEELLDRVFTILRENNPDLAGDRRRTVMRPPQVLREGTKKAVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCQSPDTILSKENRLFFLRCEKCGSGRSVAPNKAGFMARVGRRNAG 270          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_WHEAT (Eukaryotic translation initiation factor 2 subunit beta OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 387.111 bits (993), Expect = 1.250e-106
Identity = 198/271 (73.06%), Postives = 220/271 (81.18%), Query Frame = 3
Query:   75 MTDENQVDVKDEVAELAPFDPTXXXXXXXVVIQDPSDDSVDKLAEITETSSVSEGLESTFTGLXXXXXXPVESSLLNDEIGDAGDDLDGHVGEDDEADGS--GGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFKARVGRRNAG 881
            M DE Q++ K+E  E+APFDPT       VVIQDP+D+ VDKLAE TE  SV+E  E++F GL       VE      E GD  D LD  VGED++ +G   GG  Q YPWEG+DRDY+Y+ELLGRVFNILRENNP+LAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQP+HVM FLLAE+GTSGSLDGQQRLV+KGRFAPKNFE ILRRY+NEYVIC GCKSPDTILSKENRLFFLRCE+CGS RSVAPIKAGF A+VGRR AG
Sbjct:    1 MADEEQMERKEEATEIAPFDPTKKKKKKKVVIQDPADE-VDKLAEKTEGLSVTESGEASFVGLKKKKKKLVELDPSLVEAGDGEDTLDDQVGEDEQGEGIVLGGATQ-YPWEGTDRDYKYDELLGRVFNILRENNPDLAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPEHVMMFLLAEMGTSGSLDGQQRLVIKGRFAPKNFEAILRRYINEYVICHGCKSPDTILSKENRLFFLRCEQCGSSRSVAPIKAGFVAQVGRRKAG 269          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_ARATH (Eukaryotic translation initiation factor 2 subunit beta OS=Arabidopsis thaliana GN=EMB1401 PE=2 SV=3)

HSP 1 Score: 377.096 bits (967), Expect = 1.294e-103
Identity = 190/267 (71.16%), Postives = 217/267 (81.27%), Query Frame = 3
Query:   75 MTDENQVDVKDEVAELAPFDPTXXXXXXXVVIQDPSDDSVDKL-AEITETSSVSEGLESTFTGLXXXXXXPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFKARVGRR 872
            M DE   ++++E  +LAPFDP+       VVIQ+P +D  +    E +++  V++GLES+FTG+      P ESSLLN+E  DAG+DLD    ++ E +     +QRYPWEGS+RDY Y+ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVM +LLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRY+ +YVICLGCKSPDTILSKENRLFFLRCEKCGS RSVAPIK GF ARV RR
Sbjct:    1 MADEIN-EIREEQEQLAPFDPSKKKKKKKVVIQEPVEDLAESSQTEKSDSLPVNDGLESSFTGMKKKKKKPTESSLLNNESVDAGEDLDEIANDEQEGEEGIVLQQRYPWEGSERDYIYDELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMQYLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYITDYVICLGCKSPDTILSKENRLFFLRCEKCGSQRSVAPIKTGFVARVSRR 266          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_BOVIN (Eukaryotic translation initiation factor 2 subunit 2 OS=Bos taurus GN=EIF2S2 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 3.123e-57
Identity = 111/191 (58.12%), Postives = 139/191 (72.77%), Query Frame = 3
Query:  306 DEIGDAGDDLDGHVGEDDEADGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFKARVGRR 872
            DE+ +  + L+    + D  DG     Q  P W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GTKKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  +LV+KGRF  K  E +LRRY+ EYV C  C+SPDTIL K+ RL+FL+CE C S  SVA IK GF+A  GRR
Sbjct:  137 DEVLEKDEALEDEDSKKD--DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFLQCETCHSRCSVASIKTGFQAVTGRR 325          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_RABIT (Eukaryotic translation initiation factor 2 subunit 2 OS=Oryctolagus cuniculus GN=EIF2S2 PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 5.327e-57
Identity = 111/191 (58.12%), Postives = 139/191 (72.77%), Query Frame = 3
Query:  306 DEIGDAGDDLDGHVGEDDEADGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFKARVGRR 872
            DEI +  + L+    + D  DG     Q  P W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GTKKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  +LV+KGRF  K  E +LRRY+ EYV C  C+SPDTIL K+ RL+FL+CE C S  SVA IK GF+A  G+R
Sbjct:  137 DEILEKDEALEDEDSKKD--DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFLQCETCHSRCSVASIKTGFQAVTGKR 325          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_HUMAN (Eukaryotic translation initiation factor 2 subunit 2 OS=Homo sapiens GN=EIF2S2 PE=1 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 5.327e-57
Identity = 111/191 (58.12%), Postives = 139/191 (72.77%), Query Frame = 3
Query:  306 DEIGDAGDDLDGHVGEDDEADGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFKARVGRR 872
            DEI +  + L+    + D  DG     Q  P W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GTKKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  +LV+KGRF  K  E +LRRY+ EYV C  C+SPDTIL K+ RL+FL+CE C S  SVA IK GF+A  G+R
Sbjct:  137 DEILEKDEALEDEDNKKD--DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFLQCETCHSRCSVASIKTGFQAVTGKR 325          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_MOUSE (Eukaryotic translation initiation factor 2 subunit 2 OS=Mus musculus GN=Eif2s2 PE=1 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 6.958e-57
Identity = 109/190 (57.37%), Postives = 138/190 (72.63%), Query Frame = 3
Query:  306 DEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFKARVGRR 872
            DEI +  + L+    ED + D       +  W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GTKKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  +LV+KGRF  K  E +LRRY+ EYV C  C+SPDTIL K+ RL+FL+CE C S  SVA IK GF+A  G+R
Sbjct:  137 DEILEKDEALED---EDSKKDDGISFSSQTAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFLQCETCHSRCSVASIKTGFQAVTGKR 323          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_PONAB (Eukaryotic translation initiation factor 2 subunit 2 OS=Pongo abelii GN=EIF2S2 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 1.550e-56
Identity = 110/191 (57.59%), Postives = 138/191 (72.25%), Query Frame = 3
Query:  306 DEIGDAGDDLDGHVGEDDEADGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFKARVGRR 872
            DEI +  + L+    + D  DG     Q  P W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GTKKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  +LV+KGRF  K  E +LRRY+ EYV C  C+SPDTIL K+ RL+FL+CE C S  S A IK GF+A  G+R
Sbjct:  137 DEILEKDEALEDEDNKKD--DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFLQCETCHSRCSAASIKTGFQAVTGKR 325          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_DROME (Eukaryotic translation initiation factor 2 subunit 2 OS=Drosophila melanogaster GN=eIF-2beta PE=1 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 1.550e-56
Identity = 110/194 (56.70%), Postives = 138/194 (71.13%), Query Frame = 3
Query:  300 LNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRR-RTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFKARVGRRNA 878
            L++   D  DD      E+DE + S        W GSDRDY Y+ELL RVF I+ + NP++A  R+ + VMRPPQVLR GTKKT F NFMD+ KT+HR P H++ FLLAELGTSGS+DG Q+L++KGRF PK  E +LRRY+ EYV C  C+SP+TIL K+ RLFFL+CE CGS  SVA IK+GF+A  G+R A
Sbjct:  120 LDELFADQADDDKSEDKENDEDNSS-------TWFGSDRDYTYDELLKRVFEIILDKNPDMAAGRKPKFVMRPPQVLRVGTKKTSFANFMDIAKTLHRLPKHLLDFLLAELGTSGSMDGNQQLIIKGRFQPKQIENVLRRYIKEYVTCHTCRSPETILQKDTRLFFLQCESCGSRCSVASIKSGFQAVTGKRAA 306          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2BL_HUMAN (Eukaryotic translation initiation factor 2 subunit 2-like protein OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 2.024e-56
Identity = 133/312 (42.63%), Postives = 173/312 (55.45%), Query Frame = 3
Query:   39 REDLSFDSRNSTMTDENQVDVKDEVAELAPFDPTXXXXXXXVVIQDPSDDSVD-----------KLAEITETSSVSEGLESTFTGLXXXXXXPVESSLLNDEIGDAGDDLDGHVG------------EDDEA---------DGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFKARVGRR 872
            ++    D    T T+E +     EV      D            +D SDD  D           K  +I +     EG++             +ES +   E  +  DDLD  +G            ++DEA         DG     Q  P W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GTKKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  +LV+KGRF  K  E +LRRY+ EYV C  C+SPDTIL K+ RL+FL+CE C S  SVA IK GF+A +G+R
Sbjct:   20 KKPFMLDEEGDTQTEETRPSETKEVEPEPTEDKDLEADEEDTRKKDASDDLDDLNFFNQKKKKKKTKKIFDIDEAEEGVKDL----------KIESDV--QEPTEPEDDLDIMLGNKKKKKKNVKFPDEDEALEDEDNKKDDGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDMRLYFLQCETCHSRCSVAIIKIGFQAVMGKR 319          
The following BLAST results are available for this feature:
BLAST of DY257829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
IF2B_MALDO4.288e-11577.41Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_WHEAT1.250e-10673.06Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_ARATH1.294e-10371.16Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_BOVIN3.123e-5758.12Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_RABIT5.327e-5758.12Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_HUMAN5.327e-5758.12Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_MOUSE6.958e-5757.37Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_PONAB1.550e-5657.59Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_DROME1.550e-5656.70Eukaryotic translation initiation factor 2 subunit... [more]
IF2BL_HUMAN2.024e-5642.63Eukaryotic translation initiation factor 2 subunit... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CH04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257829 ID=DY257829; Name=DY257829; organism=Citrus clementina; type=EST; length=1326bp
GGAATTCATTTCTTTAGCCGCAGGCCGTCAGCGACGGAAGAGAAGATCTC
AGTTTCGATTCTAGAAACTCGACTATGACGGACGAAAATCAAGTAGATGT
GAAGGACGAGGTGGCAGAACTTGCCCCCTTCGATCCTACTAAAAAGAAGA
AGAAGAAGAAGGTTGTAATACAGGATCCTTCAGATGATTCTGTGGACAAA
CTGGCCGAGATAACTGAAACTTCATCAGTCTCTGAGGGGCTTGAAAGTAC
TTTTACTGGTTTGAAAAAGAAGAAGAAGAAACCAGTAGAAAGCAGTCTAT
TGAACGATGAGATTGGGGATGCAGGAGACGATTTGGATGGTCACGTGGGT
GAGGATGATGAAGCTGATGGAAGTGGTGGTCCACGGCAGCGTTATCCATG
GGAAGGGAGTGATCGCGACTATGAATATGAGGAGCTTCTTGGTAGGGTCT
TTAACATCCTCCGAGAGAATAATCCTGAACTTGCAGGAGATAGGCGTAGA
ACAGTCATGAGACCTCCACAAGTTCTTCGTGAAGGAACAAAGAAAACTGT
TTTTGTCAATTTCATGGATCTCTGCAAGACCATGCATCGGCAGCCAGATC
ATGTCATGACATTTTTGCTTGCTGAACTGGGGACAAGTGGGTCACTGGAC
GGACAGCAAAGACTGGTCGTGAAGGGCCGATTTGCTCCCAAGAATTTTGA
AGGGATACTGCGTCGATATGTCAATGAATATGTCATCTGTCTTGGGTGCA
AAAGTCCTGACACGATACTTTCAAAGGAAAACCGCCTCTTCTTTCTCAGA
TGTGAGAAGTGTGGTTCTGGACGATCAGTTGCTCCCATCAAAGCTGGTTT
CAAGGCACGTGTTGGTCGTAGAAATGCTGGAATGTGATCTTGTGGTCCTG
CTTTTCTCAGCATTTTGAAAAAAAAGAGGTTTGTTTTCATTTTTACCTTA
TGCGTTTTACTACTAATTTGGTTTTGACTAATTGAATTTACCTAGGCCGG
GAAAATATTGGTTATGGATGACCCTTTGATAACTACAATGGATTGATAAA
TCCTTTTTTTCCCTTCCGGGGGGAAGGGCCAATTTTTTGAGCCCTCCCCC
CCAAAAAAAATTTTTTTGGGGACAGAAGGGCCACAAAGGGGGGCAAAAAA
AAAAAAAAAAAAAAGAAGAGGAAAAACCCCGTTTGGGGGCCGCCCCCGCG
CGGCCCCCCCCCACAAACTTAAAAAAACCAAAAAAAAAAAATTAAAGGTG
GGGGGGGGGCCGCCAAAATTTTTGGCGGGGTCCCTCTTGGGTGGGCGGAA
CTTTTTCTCCCCCCCTTCCTCATAAG
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