DY257840

Overview
NameDY257840
Unique NameDY257840
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1311
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY257840_ssr757 microsatellite DY257840_ssr757:757..766. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY257840 vs. ExPASy Swiss-Prot
Match: TSSC1_DANRE (Protein TSSC1 OS=Danio rerio GN=tssc1 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.496e-40
Identity = 98/293 (33.45%), Postives = 160/293 (54.61%), Query Frame = 2
Query:   35 YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS-TGESYG---AAIWQIPELY---------GQLNSPQ-LERIAALD--AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQIQSK---QSSGMLHYLSGGAWDPH-DVNAVAATCESSVQFWDLRSMVKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNL 844
            YGL++QAR ++   A+TD   FL GT SLK +N++H++        +    L     EIW +S  P D+ + +T ++ T ES     AA+W++P  +            N+PQ LE +  LD  AH G + CVLW   G   +++S+ E ++ LW L  S+  A I S    +  G L + + G W PH +   +A   +++++ WDLRSM +   IE+AH   VR++D++  K++ L +  D+  +  WD+R +  P++ L  H+HW W+V  N  +D  +L+A +DS V L
Sbjct:    9 YGLEFQARALTAQTAETDAIRFLVGTQSLKFDNQIHIIDFDDENNMINKSVLLHDAGEIWHISGSPADKAVLTTCYNKTSESRVLTCAAVWRMPPEWESGNHESPDDSSNNPQTLELLCHLDNSAH-GSMACVLWEPMGDGKRVISLAENHVLLWDLQESSAKATISSSATLEGKGQLKF-TAGKWSPHHNCTQLATANDTAIRGWDLRSMSQIYCIENAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDVRHISEPVKCLEEHSHWVWSVRYNHSHDQLLLTASSDSRVIL 299          

HSP 2 Score: 25.7942 bits (55), Expect = 2.496e-40
Identity = 8/18 (44.44%), Postives = 15/18 (83.33%), Query Frame = 3
Query:  918 SLLNSYSDYEDSVYGLCW 971
            S++++Y ++EDSVY + W
Sbjct:  338 SIISTYEEHEDSVYAVEW 355          
BLAST of DY257840 vs. ExPASy Swiss-Prot
Match: TSSC1_DICDI (Protein tssc1 homolog OS=Dictyostelium discoideum GN=tssc1 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 9.937e-40
Identity = 92/297 (30.98%), Postives = 158/297 (53.20%), Query Frame = 2
Query:   35 YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTG----------------------ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWS-LDCSNKNAQIQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMVKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLW 847
            YGL  + R +S + A+ D   FL GT +L+EENE+ LL    G   + C  +F HP EI  ++SCPFD  +F +V++T                         + +++W+I E     +   +E +  L  H G I  +L   SG ++ ++S+D+ NI LWS +D  N+   I+     G L  LS G+ +P+  N +A   + +++ WD R+  +T S++ AH   +R++D++  K + L++A D+  + +WD R  + P++   GH HW W+   N  +D  I+++ +D+TV LW
Sbjct:   14 YGLSQKTRALSHITAEADVNRFLVGTTALREENEIALLEAKEG-EGVRCLSIFPHPKEIHSITSCPFDSSLFFSVYNTSGGGNNNSNNTNNNDNTNNNTNNNDFKSSLWRINE-----SMDSIEELFELKGHTGIIKPILCDPSGSNNFIISLDDSNIRLWSKIDDQNEPTVIKQ---FGNLSKLSVGSINPNISNQLATANDVNIKGWDFRNAKETFSMDKAHSEQIRDIDFNPNKPYYLLSAGDDCKLKIWDTRQTRDPVKIFSGHNHWIWSAKFNRYHDQLIITSSSDNTVKLW 301          
BLAST of DY257840 vs. ExPASy Swiss-Prot
Match: TSSC1_XENLA (Protein TSSC1 OS=Xenopus laevis GN=tssc1 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.014e-38
Identity = 91/292 (31.16%), Postives = 153/292 (52.40%), Query Frame = 2
Query:   35 YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYG----AAIWQIP-ELYG---------QLNSPQLERIAALDAHV-GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQIQSK---QSSGMLHYLSGGAWDPH-DVNAVAATCESSVQFWDLRSMVKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNL 844
            YGL++QAR ++   A+TD   FL GT SL+ +N++H++        +    L  H  EIW + + P D+ + +T ++          AA+W+IP EL G           N+  LE +  LD+   G + CV W   G   KL+S+ +  + +W L  S+  + + S    +  G L + SG  W PH +   VA   +++++ WD+RSM +   IE+AH   VR++D++  K++ L +  D+  +  WD R +  P++ L  H+HW W+V  N  +D  +L+  +DS V L
Sbjct:    9 YGLEFQARALTAQTAETDAIRFLVGTQSLRYDNQIHVIDFDDENNIINKNVLLHHAGEIWQIGASPADRNVLATCYNKISDSKVMTCAAVWRIPKELQGGNHESPDDTSSNAQSLELLCHLDSTAHGNMACVTWEPLGDGKKLLSLADNYLLIWDLQESSTKSVLSSSATLEGKGQLRFTSG-KWSPHHNCTQVATANDTAIRGWDIRSMRQIYCIENAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDTRNIHEPVKTLEEHSHWVWSVRYNHSHDQLVLTGSSDSRVIL 299          

HSP 2 Score: 25.409 bits (54), Expect = 1.014e-38
Identity = 8/18 (44.44%), Postives = 14/18 (77.78%), Query Frame = 3
Query:  918 SLLNSYSDYEDSVYGLCW 971
            S++ +Y ++EDSVY + W
Sbjct:  338 SIIGTYEEHEDSVYAVEW 355          
BLAST of DY257840 vs. ExPASy Swiss-Prot
Match: TSSC1_XENTR (Protein TSSC1 OS=Xenopus tropicalis GN=tssc1 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.320e-38
Identity = 94/293 (32.08%), Postives = 155/293 (52.90%), Query Frame = 2
Query:   35 YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYG----AAIWQIP-ELYG---------QLNSPQLERIAALD--AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQIQSK---QSSGMLHYLSGGAWDP-HDVNAVAATCESSVQFWDLRSMVKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNL 844
            YGL++QAR ++   A+TD   FL GT SL+ +N++H++        +    L  H  EIW +S+ P D+ + +T ++          AA+W+IP EL G           N+  LE +  LD  AH G + CV W   G   KL+S+ +  + +W L  S+  + + S    +  G L + S G W P H+   VA   +++++ WD+RSM +   IE+AH   VR++D++  K++ L +  D+  +  WD R +  P++ L  H+HW W+V  N  +D  +L+  +DS V L
Sbjct:    9 YGLEFQARALAAQTAETDAIRFLVGTQSLRYDNQIHVIDFDDENNIINKNILLHHAGEIWQISASPADRNVLATCYNKISDSKVLTCAAVWRIPKELQGGNHESPDDTSSNAQALELLCHLDNTAH-GNMACVTWEPLGDGKKLLSLADNYLMIWDLQESSTKSVLSSSVTLEGKGQLRFTS-GKWSPHHNCTQVATANDTAIRGWDIRSMRQIYCIENAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDTRNIHEPVKTLEEHSHWVWSVRYNHSHDQLVLTGSSDSRVIL 299          

HSP 2 Score: 24.2534 bits (51), Expect = 1.320e-38
Identity = 8/18 (44.44%), Postives = 14/18 (77.78%), Query Frame = 3
Query:  918 SLLNSYSDYEDSVYGLCW 971
            S++ +Y ++EDSVY + W
Sbjct:  338 SVIATYEEHEDSVYAVEW 355          
BLAST of DY257840 vs. ExPASy Swiss-Prot
Match: TSSC1_RAT (Protein TSSC1 OS=Rattus norvegicus GN=Tssc1 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 2.920e-38
Identity = 94/292 (32.19%), Postives = 156/292 (53.42%), Query Frame = 2
Query:   35 YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS-TGESYG---AAIWQIPELY--GQLNSPQ--------LERIAALDAHV-GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQIQSK---QSSGMLHYLSGGAWDPH-DVNAVAATCESSVQFWDLRSMVKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNL 844
            YGL++QAR ++   A+TD   FL GT SLK +N++H++        +    L     EIW +S+ P D+ + +T ++ T +S     AA+W++P+    G   SP+        LE +  LD    G + CV+W   G   K++S+ + +I LW L  S+  A + S    +  G L + SG  W PH +   VA   +++++ WD RSM +   IE+AH   VR++D++  K++ L +  D+  +  WD R +  P++ L  H+HW W+V  N  +D  +L+  +DS V L
Sbjct:    9 YGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIHIIDFDDENNIINKNVLLHQAGEIWHISASPADKGVLATCYNKTSDSRVQACAAVWRMPKELESGSHESPEDPASTAQTLELLCHLDNGAQGNVACVVWEPMGDGKKVISLADSHILLWDLQPSSSQAVLASSAALEGRGQLKFTSG-RWSPHHNCTQVATASDTTLRGWDTRSMSQIYCIENAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDTRNVTEPVKTLEEHSHWVWSVRYNHSHDQLVLTGSSDSRVIL 299          

HSP 2 Score: 23.483 bits (49), Expect = 2.920e-38
Identity = 7/18 (38.89%), Postives = 14/18 (77.78%), Query Frame = 3
Query:  918 SLLNSYSDYEDSVYGLCW 971
            +++ +Y ++EDSVY + W
Sbjct:  337 NVIATYEEHEDSVYAVDW 354          
BLAST of DY257840 vs. ExPASy Swiss-Prot
Match: TSSC1_HUMAN (Protein TSSC1 OS=Homo sapiens GN=TSSC1 PE=1 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 8.411e-38
Identity = 97/293 (33.11%), Postives = 156/293 (53.24%), Query Frame = 2
Query:   35 YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS-TGES---YGAAIWQIPELY--GQLNSPQ--------LERIAALD--AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQIQSKQS---SGMLHYLSGGAWDP-HDVNAVAATCESSVQFWDLRSMVKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNL 844
            YGL++QAR ++   A+TD   FL GT SLK +N++H++        +    L     EIW +S+ P D+ + +T ++ T +S     AA+W++P+    G   SP         LE +  LD  AH G + CV+W   G   K++S+ + +I LW L  S+  A + S  S    G L + S G W P H+   VA   +++++ WD RSM +   IE+AH   VR++D++  K++ L +  D+  +  WD R +  P++ L  H+HW W V  N  +D  +L+  +DS V L
Sbjct:    9 YGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIHIIDFDDENNIINKNVLLHQAGEIWHISASPADRGVLTTCYNRTSDSKVLTCAAVWRMPKELESGSHESPDDSSSTAQTLELLCHLDNTAH-GNMACVVWEPMGDGKKIISLADNHILLWDLQESSSQAVLASSASLEGKGQLKFTS-GRWSPHHNCTQVATANDTTLRGWDTRSMSQIYCIENAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDTRNVTEPVKTLEEHSHWVWNVRYNHSHDQLVLTGSSDSRVIL 299          

HSP 2 Score: 23.483 bits (49), Expect = 8.411e-38
Identity = 7/18 (38.89%), Postives = 14/18 (77.78%), Query Frame = 3
Query:  918 SLLNSYSDYEDSVYGLCW 971
            +++ +Y ++EDSVY + W
Sbjct:  338 NVIATYEEHEDSVYAVDW 355          
BLAST of DY257840 vs. ExPASy Swiss-Prot
Match: TSSC1_MOUSE (Protein TSSC1 OS=Mus musculus GN=Tssc1 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.096e-37
Identity = 93/292 (31.85%), Postives = 155/292 (53.08%), Query Frame = 2
Query:   35 YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS-TGESYG---AAIWQIPELY--GQLNSPQ--------LERIAALDAHV-GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQIQSK---QSSGMLHYLSGGAWDPH-DVNAVAATCESSVQFWDLRSMVKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNL 844
            YGL++QAR ++   A+TD   FL GT SLK +N++H++        +    L     EIW +S+ P D+ + +T ++ T +S     AA+W++P+    G   SP         LE +  LD    G + CV+W   G   K++S+ + +I LW L  S+  A + S    +  G L + + G W PH +   VA   +++++ WD RSM +   IE+AH   VR++D++  K++ L +  D+  +  WD R +  P++ L  H+HW W+V  N  +D  +L+  +DS V L
Sbjct:    9 YGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIHIIDFDDENNIINKNVLLHQAGEIWHISASPADKGVLATCYNKTTDSRVQACAAVWRMPKELESGSHESPDDPASTAQTLELLCHLDNSAQGNVACVVWEPMGDGKKVISLADSHILLWDLQPSSSQAVLASSATLEGRGQLKF-TAGRWSPHHNCTQVATASDTTLRGWDTRSMSQIYCIENAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDTRNVTEPVKTLEEHSHWVWSVRYNHSHDQLVLTGSSDSRVIL 299          

HSP 2 Score: 23.483 bits (49), Expect = 1.096e-37
Identity = 7/18 (38.89%), Postives = 14/18 (77.78%), Query Frame = 3
Query:  918 SLLNSYSDYEDSVYGLCW 971
            +++ +Y ++EDSVY + W
Sbjct:  337 NVIATYEEHEDSVYAVDW 354          
BLAST of DY257840 vs. ExPASy Swiss-Prot
Match: TSSC1_GECJA (Protein TSSC1 OS=Gecko japonicus GN=TSSC1 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.860e-37
Identity = 94/293 (32.08%), Postives = 155/293 (52.90%), Query Frame = 2
Query:   35 YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS-TGESYG---AAIWQIPELY----------GQLNSPQLERIAALD--AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQIQSK---QSSGMLHYLSGGAWDPH-DVNAVAATCESSVQFWDLRSMVKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNL 844
            YGL++QAR ++   A+TD   FL GT SLK +N++H++        +    L     EIW +S+ P D+ + +T +S T +S     AA+W++P+               N+  LE +  LD  AH G +  VLW   G   KL+S+ + ++ LW L  S+  A + +    +  G L + SG  W PH +   VA   +++++ WD+R+M +   IE AH   VR++D++  K++ L +  D+  +  WD R +  P++ L  H+HW W V  N  +D  +L+A +DS V L
Sbjct:    9 YGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIHIIDFDDENNIINKNVLLHQVGEIWHISASPADKGVLATCYSKTSDSKVMTCAAVWRMPKELESGSHESPDDSSSNAQTLELLCHLDNTAH-GNMAGVLWEPMGDGKKLISLADNHLLLWDLQESSSKAVLSNSAALEGKGQLKFTSG-RWSPHHNCTQVATANDTAIRGWDIRTMSQIYCIESAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDTRNVSDPVKTLEEHSHWVWNVRYNHSHDQLVLTASSDSRVIL 299          

HSP 2 Score: 24.6386 bits (52), Expect = 1.860e-37
Identity = 8/18 (44.44%), Postives = 14/18 (77.78%), Query Frame = 3
Query:  918 SLLNSYSDYEDSVYGLCW 971
            S++ +Y ++EDSVY + W
Sbjct:  338 SIIATYEEHEDSVYAVEW 355          
BLAST of DY257840 vs. ExPASy Swiss-Prot
Match: TSSC1_MACFA (Protein TSSC1 OS=Macaca fascicularis GN=TSSC1 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 9.088e-37
Identity = 95/293 (32.42%), Postives = 155/293 (52.90%), Query Frame = 2
Query:   35 YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS-TGES---YGAAIWQIPELY--GQLNSPQ--------LERIAALD--AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQIQSKQS---SGMLHYLSGGAWDP-HDVNAVAATCESSVQFWDLRSMVKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNL 844
            YGL++QAR ++   A+TD   FL GT SLK +N++H++        +    L     EIW +S+ P D+ + +T ++ T +S     AA+W++P+    G   SP         LE +  LD  AH   + CV+W   G   K++S+ + +I LW L  S+  A + S  S    G L + S G W P H+   VA   +++++ WD R+M +   IE+AH   VR++D++  K++ L +  D+  +  WD R +  P++ L  H+HW W V  N  +D  +L+  +DS V L
Sbjct:    9 YGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIHIIDFDDENNIINKNVLLHQAGEIWHISASPADRGVLATCYNRTSDSKVLTCAAVWRMPKELESGSHESPDDSSSTAQTLELLCHLDNTAH-SNMACVVWEPMGDGKKIISLADNHILLWDLQESSSQAVLASSASLGGKGQLKFTS-GRWSPHHNCTQVATANDTTLRGWDTRTMSQIYCIENAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDTRNVTEPVKTLEEHSHWVWNVRYNHSHDQLVLTGSSDSRVIL 299          

HSP 2 Score: 23.483 bits (49), Expect = 9.088e-37
Identity = 7/18 (38.89%), Postives = 14/18 (77.78%), Query Frame = 3
Query:  918 SLLNSYSDYEDSVYGLCW 971
            +++ +Y ++EDSVY + W
Sbjct:  338 NVIATYEEHEDSVYAVDW 355          
BLAST of DY257840 vs. ExPASy Swiss-Prot
Match: TSSC1_PONAB (Protein TSSC1 OS=Pongo abelii GN=TSSC1 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 2.823e-35
Identity = 97/320 (30.31%), Postives = 157/320 (49.06%), Query Frame = 2
Query:   35 YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTG-------ESYGA------------------------AIWQIPELY--GQLNSPQ--------LERIAALD--AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQIQSKQS---SGMLHYLSGGAWDPH-DVNAVAATCESSVQFWDLRSMVKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNL 844
            YGL++QAR ++   A+TD   FL GT SLK +N++H++        +    L     EIW +S+ P D+ + +T ++         +S+GA                        A+W++P+    G   SP         LE +  LD  AH G + CV+W   G   K++S+ + +I LW L  S+  A + S  S    G L + SG  W PH +   VA   +++++ WD RSM +   IE+AH   VR++D++  K++ L +  D+  +  WD R +  P++ L  H+HW W V  N  +D  +L+  +DS V L
Sbjct:    9 YGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIHIIDFDDENNIINKNVLLHQVGEIWHISASPADRGVLATCYNRTFCCVLSLDSFGALGKSSAQLFIALATSSDSKVLTCAAVWRMPKELESGSHESPDDSSSTAQTLELLCHLDNTAH-GNMACVVWEPMGDGKKIISLADNHILLWDLQESSSQAVLASSASLEGKGQLKFTSG-RWSPHHNCTQVATANDTTLRGWDTRSMSQIYCIENAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDTRNVTEPVKTLEEHSHWVWNVRYNHSHDQLVLTGSSDSRVIL 326          

HSP 2 Score: 23.483 bits (49), Expect = 2.823e-35
Identity = 7/18 (38.89%), Postives = 14/18 (77.78%), Query Frame = 3
Query:  918 SLLNSYSDYEDSVYGLCW 971
            +++ +Y ++EDSVY + W
Sbjct:  365 NVIATYEEHEDSVYAVDW 382          
The following BLAST results are available for this feature:
BLAST of DY257840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
TSSC1_DANRE2.496e-4033.45Protein TSSC1 OS=Danio rerio GN=tssc1 PE=2 SV=1[more]
TSSC1_DICDI9.937e-4030.98Protein tssc1 homolog OS=Dictyostelium discoideum ... [more]
TSSC1_XENLA1.014e-3831.16Protein TSSC1 OS=Xenopus laevis GN=tssc1 PE=2 SV=1[more]
TSSC1_XENTR1.320e-3832.08Protein TSSC1 OS=Xenopus tropicalis GN=tssc1 PE=2 ... [more]
TSSC1_RAT2.920e-3832.19Protein TSSC1 OS=Rattus norvegicus GN=Tssc1 PE=2 S... [more]
TSSC1_HUMAN8.411e-3833.11Protein TSSC1 OS=Homo sapiens GN=TSSC1 PE=1 SV=2[more]
TSSC1_MOUSE1.096e-3731.85Protein TSSC1 OS=Mus musculus GN=Tssc1 PE=1 SV=1[more]
TSSC1_GECJA1.860e-3732.08Protein TSSC1 OS=Gecko japonicus GN=TSSC1 PE=2 SV=... [more]
TSSC1_MACFA9.088e-3732.42Protein TSSC1 OS=Macaca fascicularis GN=TSSC1 PE=2... [more]
TSSC1_PONAB2.823e-3530.31Protein TSSC1 OS=Pongo abelii GN=TSSC1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1DB06ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257840 ID=DY257840; Name=DY257840; organism=Citrus clementina; type=EST; length=1311bp
GGCAACAATGCAAGGAGGATCTTCAGGCATAGGCTATGGTCTCAAGTATC
AAGCTAGATGCATATCAGATGTCAAAGCAGACACGGATCACACCAGCTTC
CTCACTGGAACTCTCAGTCTCAAAGAAGAGAACGAGGTGCATTTGCTTCG
GCTTTCATCCGGTGGAACCGAGCTCATTTGCGAGGGTTTGTTCTCGCATC
CTAACGAAATATGGGACCTCAGTTCGTGTCCGTTCGATCAACGGATTTTC
TCCACTGTTTTTTCCACTGGTGAGTCATATGGGGCAGCAATATGGCAAAT
TCCAGAGTTGTATGGCCAGCTAAATTCACCTCAGTTGGAACGTATCGCCG
CTCTTGATGCACATGTTGGTAAGATTAATTGCGTTCTTTGGTGGTCATCT
GGAAGACATGATAAATTGGTCAGCATAGACGAGGAAAATATTTTCTTGTG
GAGCTTAGATTGTTCAAACAAGAATGCCCAGATACAATCTAAACAGTCAT
CTGGTATGCTGCATTATTTATCTGGTGGAGCATGGGATCCGCATGATGTA
AATGCTGTCGCAGCGACTTGTGAATCATCAGTCCAGTTTTGGGATCTCAG
ATCAATGGTGAAGACAAATTCAATCGAGCATGCGCACGTCCGCAATGTGG
ACTATGACACCAAGAAAAAGCATTTACTTGTTACTGCAGCAGATGAATCT
GGGATACATTTATGGGATCTTAGAATGCTGAAGGCACCTATCCAGGAACT
CCCTGGACACACACACTGGACTTGGGCTGTCTGCTGTAACCCTGAGTATG
ATGGATTTATTTTGAGCGCTGGTACGGACTCGACTGTAAATTTATGGTTG
GTTTCCACGTCTAACCATGATGAGCTTCCATCTGAAAGCTTAGTTGAATC
ACAAATCAGCGCGCTAATCATTACTCAATTCATATAGTGATTATGAAGAC
AGTGTGTATGGCCTTTGCTGGAAGTTCCCCTGAGGCTTGGGATTTTTGCT
TCCCTGGCCCTAAGATGGGAGGGGAAATTGGTCAAGTCGGGGGAAGCCCT
TTCCCTCTCGCGAAAATGAAGATCCAACCTAAGTTCGCGACCGCCCCGCA
TTGTTCCTTAAATTTCGGGGAAAATTTTTTTACCCCCTCGGGTTCTTTTC
CCTTTCCCAAAAATCGGAAAACAAGAGGGAAAACTTTCCCCCACCCCCCC
GGGGTTTGAATAATTTTTAAATTTTAAAGGGGAAAAAAAAAAAAATGTGG
GGGAGTTTTGGGGGGAGAACCAGGAGGAAAAAATTTTTTTTTTTTTTTTT
CCCTTGCGGGG
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