DY257843

Overview
NameDY257843
Unique NameDY257843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length833
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10062 contig Ccv1_Contig10062:1..831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257843 vs. ExPASy Swiss-Prot
Match: Y992_SYNY3 (Uncharacterized tRNA/rRNA methyltransferase slr0992 OS=Synechocystis sp. (strain PCC 6803) GN=slr0992 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.855e-29
Identity = 73/148 (49.32%), Postives = 97/148 (65.54%), Query Frame = 3
Query:  312 QIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVVKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQL 755
            QIP NTG IARTCAA+   LHLVGPLGF++ D  LKRAGLDYWPYV +  H++  EF  ++R Q G   LL F+  GT    + +Y+  D+L+ GSET GL P+ + D +++      + IPM  + VR LNL+ S  IA++EA RQL
Sbjct:   10 QIPPNTGNIARTCAATGTELHLVGPLGFELGDRYLKRAGLDYWPYVDLHYHNSCEEFITHWRGQGG--NLLGFSVTGTVNFWDYTYQSTDWLMMGSETDGL-PQMMRDLSTQ-----LLCIPMPHSEVRSLNLASSAAIALFEAGRQL 149          
BLAST of DY257843 vs. ExPASy Swiss-Prot
Match: Y766_HAEIN (Probable tRNA/rRNA methyltransferase HI0766 OS=Haemophilus influenzae GN=HI0766 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.598e-27
Identity = 68/151 (45.03%), Postives = 90/151 (59.60%), Query Frame = 3
Query:  312 QIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVVKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 764
            +IP NTG I R CA +   LHL+ PLGF  DD +L+R+GLDY  +  +K H T+    + F + E  KRL A T +G   HS++ ++ GDYL+FG ET G+P   L +   E      IRIPM     R +NLS SV + VYEA RQL Y+
Sbjct:   10 EIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHKTF----EAFLESEKPKRLFALTTKGCPAHSQVKFKLGDYLMFGPETRGIPMSILNEMPMEQ----KIRIPMTAN-SRSMNLSNSVAVTVYEAWRQLGYK 151          
BLAST of DY257843 vs. ExPASy Swiss-Prot
Match: YIBK_ECOLI (Uncharacterized tRNA/rRNA methyltransferase yibK OS=Escherichia coli (strain K12) GN=yibK PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.507e-26
Identity = 69/150 (46.00%), Postives = 88/150 (58.67%), Query Frame = 3
Query:  312 QIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVVKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 761
            +IP NTG I R CA +   LH++ P+GF  DD +L+RAGLDY  +  V  H  +      F + E  +RL A T +GT  HS +SY+ GDYL+FG ET GLP   L    +E      IRIPMV    R +NLS +V + VYEA RQL Y
Sbjct:   10 EIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHDYRA----FLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPAEQ----KIRIPMVPD-SRSMNLSNAVSVVVYEAWRQLGY 150          
BLAST of DY257843 vs. ExPASy Swiss-Prot
Match: YIBK_ECOL6 (Uncharacterized tRNA/rRNA methyltransferase yibK OS=Escherichia coli O6 GN=yibK PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.507e-26
Identity = 69/150 (46.00%), Postives = 88/150 (58.67%), Query Frame = 3
Query:  312 QIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVVKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 761
            +IP NTG I R CA +   LH++ P+GF  DD +L+RAGLDY  +  V  H  +      F + E  +RL A T +GT  HS +SY+ GDYL+FG ET GLP   L    +E      IRIPMV    R +NLS +V + VYEA RQL Y
Sbjct:   10 EIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHDYRA----FLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPAEQ----KIRIPMVPD-SRSMNLSNAVSVVVYEAWRQLGY 150          
BLAST of DY257843 vs. ExPASy Swiss-Prot
Match: CSPR_BACSU (Uncharacterized tRNA/rRNA methyltransferase cspR OS=Bacillus subtilis GN=cspR PE=3 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 7.295e-26
Identity = 69/157 (43.95%), Postives = 89/157 (56.69%), Query Frame = 3
Query:  312 QIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVVKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD---YLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 773
            +IP NTG IARTCAA+   LHL+ PLGF  DD  LKRAGLDYW +V V  H +  E  + ++    + +    TK G   H+   Y   D   + +FG ETSGLP + + +          +R+PM E +VR LNLS +  I VYEA RQ NY  LK
Sbjct:   14 EIPANTGNIARTCAATNTTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVYHDSLEELFEAYK----KGKFFFITKFGQQPHTSFDYTDLDEDYFFVFGRETSGLPKDLIQNNMDR-----CLRLPMTE-HVRSLNLSNTAAILVYEALRQQNYRDLK 160          
BLAST of DY257843 vs. ExPASy Swiss-Prot
Match: Y956_LISMF (Uncharacterized tRNA/rRNA methyltransferase LMOf2365_0956 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=LMOf2365_0956 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.521e-23
Identity = 69/156 (44.23%), Postives = 90/156 (57.69%), Query Frame = 3
Query:  312 QIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVVKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISY---RKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 770
            +IP NTG I+RTCA +   LHL+ PLGF  DD  LKRAGLDYW  V +  + +  EF   F + EG +     TK G   +S+I Y    K  + +FG ET+GL P+ALL    E      +RIPM + ++R LNLS +  I  YEA RQ N+  L
Sbjct:   11 EIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSYYDSLDEF---FEKNEGGE-FYYITKFGRHVYSDIDYSDPNKDYFFVFGKETTGL-PDALLQKNEE----NCLRIPMTD-HIRSLNLSNTAAILAYEALRQQNFGAL 156          
BLAST of DY257843 vs. ExPASy Swiss-Prot
Match: YGL3_BACST (Uncharacterized tRNA/rRNA methyltransferase in gldA 3'region OS=Bacillus stearothermophilus PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.426e-23
Identity = 67/156 (42.95%), Postives = 86/156 (55.13%), Query Frame = 3
Query:  312 QIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVVKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISY---RKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 770
            +IP NTG IARTCAA+   LHL+ PLGF  DD  L+RAGLDYW +V +  + +     D+F QQ         TK G   ++   +    K  + IFG ET+GLP E L +          +RIPM E  VR LNLS +  I VYEA RQ ++  L
Sbjct:   11 EIPANTGNIARTCAATNTALHLIRPLGFSTDDKMLRRAGLDYWEFVNIHYYDS----LDHFFQQNQNGDFYYITKFGKRYYTSYDFSDPSKEIFFIFGRETTGLPKELLAENEDR-----CLRIPMTEN-VRALNLSNTAAILVYEALRQQSFHGL 156          
BLAST of DY257843 vs. ExPASy Swiss-Prot
Match: Y934_LISIN (Uncharacterized tRNA/rRNA methyltransferase lin0934 OS=Listeria innocua GN=lin0934 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.869e-22
Identity = 65/156 (41.67%), Postives = 88/156 (56.41%), Query Frame = 3
Query:  312 QIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVVKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISY---RKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 770
            +IP NTG I+RTCA +   LHL+ PLGF  DD  LKRAGLDYW  V +  + +  EF   F +  G +     TK G   +S++ Y    K  + +FG ET+GLP E LL    E      +RIPM + ++R LNLS +  +  YEA RQ ++  L
Sbjct:   11 EIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSYYDSLDEF---FEKNAGGE-FYYITKFGRHVYSDVDYSDPNKNYFFVFGKETTGLPDE-LLQANEE----NCLRIPMTD-HIRSLNLSNTAAVLAYEALRQQSFGAL 156          
BLAST of DY257843 vs. ExPASy Swiss-Prot
Match: Y521_MYCPN (Uncharacterized tRNA/rRNA methyltransferase MG346 homolog OS=Mycoplasma pneumoniae GN=MPN_521 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.877e-19
Identity = 59/161 (36.65%), Postives = 85/161 (52.80%), Query Frame = 3
Query:  300 YCPWQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVVKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISY----RKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 770
            +CP +IP NTG I R+C A    LHL+ P GF ++D ++ RAGL+ W  V +  H +W  F          K +   TK GT+T  +I+     R+  Y +FG ET GLP   +     E +    +RIP +   VR +NLS +V   +YE A+Q +Y  L
Sbjct:   11 FCP-EIPNNTGNIVRSCTAFKANLHLIKPYGFFLNDKRMVRAGLNCWDKVQMFEHKSWEHF---IETTPPNKAIWLLTKSGTTTPDQINMQTDNREQLYFVFGQETKGLPQTLM-----EQYSQNQVRIP-IWNPVRSINLSNTVACVLYEYAKQNHYFNL 161          
BLAST of DY257843 vs. ExPASy Swiss-Prot
Match: Y346_MYCGE (Uncharacterized tRNA/rRNA methyltransferase MG346 OS=Mycoplasma genitalium GN=MG346 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.379e-16
Identity = 55/161 (34.16%), Postives = 81/161 (50.31%), Query Frame = 3
Query:  300 YCPWQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVVKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEI----SYRKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 770
            +CP +IP NTG I R+C A    LHL+ P GF ++D ++ RAGL+ W  + +  H +W  F    +     K +   TK G  T  +I          Y +FG ET GLP   +     + F    IRIP+  + VR +NL+ +V   +YE ++Q  Y  L
Sbjct:   11 FCP-EIPNNTGNIVRSCTAFKANLHLIKPYGFFLNDKRMVRAGLNCWDKIQLFEHKSWEHF---LQATTENKTIWLLTKSGDKTPDQICMTNKLPNELYFVFGQETKGLPKTIM-----DNFKQNQIRIPIWNS-VRSINLANAVVCILYEYSKQNQYSNL 161          
The following BLAST results are available for this feature:
BLAST of DY257843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
Y992_SYNY31.855e-2949.32Uncharacterized tRNA/rRNA methyltransferase slr099... [more]
Y766_HAEIN6.598e-2745.03Probable tRNA/rRNA methyltransferase HI0766 OS=Hae... [more]
YIBK_ECOLI2.507e-2646.00Uncharacterized tRNA/rRNA methyltransferase yibK O... [more]
YIBK_ECOL62.507e-2646.00Uncharacterized tRNA/rRNA methyltransferase yibK O... [more]
CSPR_BACSU7.295e-2643.95Uncharacterized tRNA/rRNA methyltransferase cspR O... [more]
Y956_LISMF1.521e-2344.23Uncharacterized tRNA/rRNA methyltransferase LMOf23... [more]
YGL3_BACST4.426e-2342.95Uncharacterized tRNA/rRNA methyltransferase in gld... [more]
Y934_LISIN2.869e-2241.67Uncharacterized tRNA/rRNA methyltransferase lin093... [more]
Y521_MYCPN3.877e-1936.65Uncharacterized tRNA/rRNA methyltransferase MG346 ... [more]
Y346_MYCGE1.379e-1634.16Uncharacterized tRNA/rRNA methyltransferase MG346 ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB1DC01ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257843 ID=DY257843; Name=DY257843; organism=Citrus clementina; type=EST; length=833bp
GCGGGGGAAACAACGAGTCTTAAAACCTTTAATGCAATAGTACCTTTGCA
TGCCCATTTCCGTTCAAGAGCTCCGAACTTCACTCAATTCAAGAACAATT
TCAGCTTCTCTTCACCTCTCTCCTCTTTCTCTTCTTTTCGCTTCTCTCCT
ATCTGCTCTCTACCTGAAAGGGAAAATGGCGGGTTTATGCCACGTGGGGT
TGGTGAGGCAGTTAACGGTCTCTCCCAAAACAAGTTTCTTCAAGTTGTTT
TAGTCTCTCCCCAGACGACCTCATTTCTTGGGGCTGGCTCTGAGAATTCT
ATTGTCCTTGGCAGATTCCTGGAAACACAGGTTGCATTGCGAGAACATGT
GCAGCATCAGCTTGTGGACTACACTTAGTTGGGCCATTAGGATTTCAAGT
GGATGATACAAAATTAAAGCGTGCTGGATTGGATTACTGGCCATATGTGG
TTGTTAAAGTTCATAGCACATGGGCAGAGTTTCGAGATTATTTCAGGCAA
CAGGAAGGGGAAAAGAGATTGTTGGCATTTACTAAAAGAGGAACCTCAAC
ACATTCAGAAATCTCATATAGAAAAGGAGATTATCTCATATTTGGCTCAG
AAACTAGTGGTCTACCACCTGAAGCATTGCTAGACTGCACAAGCGAAACA
TTTGGGGGTGGGACAATTCGAATTCCAATGGTTGAAACTTATGTTAGATG
TCTGAATCTCTCTGTAAGTGTTGGCATTGCTGTGTATGAAGCTGCCAGAC
AGCTAAACTATGAGCAACTCAAAACCGCATCTGATACTTGTATCGACAGG
GAATTCCCATTTATCACCGAAGATATTTTTGCT
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