DY257846

Overview
NameDY257846
Unique NameDY257846
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1128
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY257846_ssr550 microsatellite DY257846_ssr550:550..559. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY257846 vs. ExPASy Swiss-Prot
Match: ATPO_IPOBA (ATP synthase subunit O, mitochondrial OS=Ipomoea batatas PE=1 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 5.560e-65
Identity = 138/244 (56.56%), Postives = 168/244 (68.85%), Query Frame = 2
Query:   35 MATVSRIRS-SLSVFNKIL----RSNSQLSPPHPQLS-----KGFSTSSVQKEQKVKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFLREPIHF 736
            MA   R RS   S+  K L    RSN+  S   P LS     + ++T+S  KEQK+KVPL ++G SGNYASALY+AAVK+N LEKVESE+ DLVEASKK+ T+ QF +D SVP +TRV AI EIC QAKF D T++FL++LAENGRL+++D I KRF ELTMAH+GEVK TVT+VI                              DP+ILGGLVVEFGQKVFDMSI++RARQMERFLREP++F
Sbjct:    1 MAMTGRARSMGFSILQKALSSAQRSNAHRSILCPTLSNSELLRNYATASASKEQKIKVPLTMYGVSGNYASALYLAAVKSNTLEKVESELYDLVEASKKSPTFSQFMRDPSVPVDTRVNAIKEICAQAKFGDTTQNFLLILAENGRLKHIDRIVKRFKELTMAHRGEVKATVTTVIPLPADEEKELKATLQEMVGQGKSVQIEQKIDPTILGGLVVEFGQKVFDMSIRTRARQMERFLREPLNF 244          
BLAST of DY257846 vs. ExPASy Swiss-Prot
Match: ATPO_ARATH (ATP synthase subunit O, mitochondrial OS=Arabidopsis thaliana GN=At5g13450 PE=1 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 5.398e-52
Identity = 113/236 (47.88%), Postives = 152/236 (64.41%), Query Frame = 2
Query:   47 SRIRSSLSVFNKILRSNSQLSPPHPQLS---KGFSTSSVQKEQKVKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFLREPIHFGTL 745
            +R RS +S F  I  ++S  S     L    + ++T+S Q    VKVP+AL G +GN+AS LYIAAVK N+LEK+E+++ +++EA K A  + QFTKD SVP  TR+ AI + C QAKF++ TK+FL +LAENG+L+NLD I K+F++LT AH+G+VKV VT+VI                              DPSI GGL+VEF QKV DMSI++RA+QMER LREP+ F  L
Sbjct:    3 NRFRSGISFFKTIAVTDSVSSVRSKSLFPALRTYATASAQTTANVKVPIALVGENGNFASWLYIAAVKMNSLEKIETDLSEMIEAMKTAPIFAQFTKDPSVPRGTRLAAIRDACDQAKFAEPTKNFLSLLAENGKLKNLDAIVKKFMQLTNAHRGDVKVLVTTVIPLPPAEEKELTETLQEIIGAGKKITVEQKIDPSIYGGLIVEFQQKVLDMSIRTRAQQMERLLREPVDFNNL 238          
BLAST of DY257846 vs. ExPASy Swiss-Prot
Match: ATPO_PONAB (ATP synthase subunit O, mitochondrial OS=Pongo abelii GN=ATP5O PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.792e-24
Identity = 69/197 (35.03%), Postives = 103/197 (52.28%), Query Frame = 2
Query:  137 FSTSSVQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 724
            FSTS V+   K V+ P+ ++G  G YA+ALY AA K N LE+VE E+L + +  K+            V    +VK++N+I  + +FS +T + + +LAENGRL N   +   F  +  AH+GEV  TVTS                                DPSILGG++V  G+K  DMS+K++ +++ R +RE
Sbjct:   16 FSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILKEPKVAAPVLNPY-VKRSIKVKSLNDITAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSAHRGEVPCTVTSASPLEEATLSELKTVLKSFLSQGQVLKLEAKTDPSILGGMIVRIGEKYVDMSVKTKIQKLSRAMRE 211          
BLAST of DY257846 vs. ExPASy Swiss-Prot
Match: ATPO_HUMAN (ATP synthase subunit O, mitochondrial OS=Homo sapiens GN=ATP5O PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.061e-23
Identity = 68/197 (34.52%), Postives = 102/197 (51.78%), Query Frame = 2
Query:  137 FSTSSVQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 724
            FSTS V+   K V+ P+ ++G  G YA+ALY AA K N LE+VE E+L + +  K+            V    +VK++N+I  + +FS +T + + +LAENGRL N   +   F  +   H+GEV  TVTS                                DPSILGG++V  G+K  DMS+K++ +++ R +RE
Sbjct:   16 FSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILKEPKVAASVLNPY-VKRSIKVKSLNDITAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRGEVPCTVTSASPLEEATLSELKTVLKSFLSQGQVLKLEAKTDPSILGGMIVRIGEKYVDMSVKTKIQKLGRAMRE 211          
BLAST of DY257846 vs. ExPASy Swiss-Prot
Match: ATPO_RHIFE (ATP synthase subunit O, mitochondrial OS=Rhinolophus ferrumequinum GN=ATP5O PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 5.265e-23
Identity = 64/197 (32.49%), Postives = 102/197 (51.78%), Query Frame = 2
Query:  137 FSTSSVQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 724
            FSTS V+   K V+ P+ ++G  G YA+ALY AA K N LE+VE E+L + +  K+            +    +VK++N++ T+ KFS +T + + +LAENGRL N   +   F  +   H+GEV  +VT+                                DPSI+GG+++  G+K  DMS K++ +++ R +RE
Sbjct:   16 FSTSVVRPFTKLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVAQLLKEPKMAASIMNPY-IKRSIKVKSLNDMTTKEKFSPLTSNLMNLLAENGRLNNTPGVISAFSTIMSVHRGEVPCSVTTASPLDEATLSELKTVLQSFLSKNQILKLEVKTDPSIMGGMIIRIGEKYVDMSAKTKIQKLSRVMRE 211          
BLAST of DY257846 vs. ExPASy Swiss-Prot
Match: ATPO_BOVIN (ATP synthase subunit O, mitochondrial OS=Bos taurus GN=ATP5O PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 2.613e-22
Identity = 65/197 (32.99%), Postives = 101/197 (51.27%), Query Frame = 2
Query:  137 FSTSSVQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 724
            FSTS V+   K V+ P+ ++G  G YA+ALY AA K N LE+VE E+L + +  K+            V    +VK+++++  + KFS +T + + +LAENGRL N   +   F  +   H+GEV  TVT+                                DPSI+GG++V  G+K  DMS K++ +++ R +RE
Sbjct:   16 FSTSVVRPFAKLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVGQILKEPKMAASLLNPY-VKRSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLTNTPAVISAFSTMMSVHRGEVPCTVTTASALDEATLTELKTVLKSFLSKGQVLKLEVKIDPSIMGGMIVRIGEKYVDMSAKTKIQKLSRAMRE 211          
BLAST of DY257846 vs. ExPASy Swiss-Prot
Match: ATPO_MOUSE (ATP synthase subunit O, mitochondrial OS=Mus musculus GN=Atp5o PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.297e-21
Identity = 65/199 (32.66%), Postives = 100/199 (50.25%), Query Frame = 2
Query:  131 KGFSTSSVQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 724
            + FSTS V+   K V+ P+ ++G  G YA+ALY AA K   L++VE E+L + +  K             +    +VK++N+I  + KFS +T + + +LAENGRL N   I   F  +   H+GEV  TVT+                                DPSI+GG++V  G+K  DMS KS+ +++ + +RE
Sbjct:   14 RSFSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKEKKLDQVEKELLRVGQLLKDPKVSLAVLNPY-IKRTVKVKSLNDITKREKFSPLTANLMNLLAENGRLGNTQGIISAFSTIMSVHRGEVPCTVTTASPLDDAVLSELKTVLKSFLSPNQILKLEIKTDPSIMGGMIVRIGEKYVDMSAKSKIQKLSKAMRE 211          
BLAST of DY257846 vs. ExPASy Swiss-Prot
Match: ATPO_RAT (ATP synthase subunit O, mitochondrial OS=Rattus norvegicus GN=Atp5o PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.694e-21
Identity = 63/199 (31.66%), Postives = 100/199 (50.25%), Query Frame = 2
Query:  131 KGFSTSSVQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 724
            + FSTS V+   K V+ P+ ++G  G YA+ALY AA K   L++VE E+L + +  K             +    +VK++ +I T+ KFS +T + + +LAENGRL N   +   F  +   H+GEV  TVT+                                DPSI+GG++V  G+K  DMS KS+ +++ + +R+
Sbjct:   14 RSFSTSVVRPFSKLVRPPVQVYGIEGRYATALYSAASKQKRLDQVEKELLRVGQLLKDPKVSLAVLNPY-IKRSIKVKSLKDITTKEKFSPLTANLMNLLAENGRLGNTQGVISAFSTIMSVHRGEVPCTVTTAFPLDEAVLSELKTVLNSFLSKGQILNLEVKTDPSIMGGMIVRIGEKYVDMSAKSKIQKLSKAMRD 211          
BLAST of DY257846 vs. ExPASy Swiss-Prot
Match: ATPO_PIG (ATP synthase subunit O, mitochondrial OS=Sus scrofa GN=ATP5O PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.694e-21
Identity = 63/197 (31.98%), Postives = 101/197 (51.27%), Query Frame = 2
Query:  137 FSTSSVQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 724
            FSTS V+   K V+ P+ ++G  G YA+ALY AA K N LE+VE E+L + +  K+            V    +VK+++++  + KFS +T + + +LAENGRL +   +   F  +   H+GEV  +VT+                                DPSI+GG++V  G+K  DMS K++ +++ R +RE
Sbjct:   16 FSTSVVRPFAKLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILKEPKVAASIMNPY-VKRSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLSSTPGVISAFSTMMSVHRGEVPCSVTTASPLDEATLTELKTVLKSFLSKGQILKLEVKVDPSIMGGMIVRIGEKYVDMSAKTKIQKLSRAMRE 211          
BLAST of DY257846 vs. ExPASy Swiss-Prot
Match: ATPO_CALMO (ATP synthase subunit O, mitochondrial OS=Callicebus moloch GN=ATP5O PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.212e-21
Identity = 63/199 (31.66%), Postives = 101/199 (50.75%), Query Frame = 2
Query:  137 FSTSSVQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFLREPI 730
            FSTS V+   K V+ P+ ++G  G YA+ALY AA K   LE+VE E+L + +  K+            V    +VK++++I  + +FS +T + + +LAENGRL N   +   F  +   H+GE+  TVT+                                DPSI+GG++V  G+K  DMS K++ +++ + +RE I
Sbjct:   16 FSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKQKKLEQVEKELLRVAQILKEPKVAASVLNPY-VKHSVKVKSLSDIIAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRGEIPCTVTTASPLEETTLSELKTVLKSFLSQGQILKLEVKTDPSIMGGMIVRIGEKYVDMSAKTKIQKLSKAMREVI 213          
The following BLAST results are available for this feature:
BLAST of DY257846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
ATPO_IPOBA5.560e-6556.56ATP synthase subunit O, mitochondrial OS=Ipomoea b... [more]
ATPO_ARATH5.398e-5247.88ATP synthase subunit O, mitochondrial OS=Arabidops... [more]
ATPO_PONAB2.792e-2435.03ATP synthase subunit O, mitochondrial OS=Pongo abe... [more]
ATPO_HUMAN1.061e-2334.52ATP synthase subunit O, mitochondrial OS=Homo sapi... [more]
ATPO_RHIFE5.265e-2332.49ATP synthase subunit O, mitochondrial OS=Rhinoloph... [more]
ATPO_BOVIN2.613e-2232.99ATP synthase subunit O, mitochondrial OS=Bos tauru... [more]
ATPO_MOUSE1.297e-2132.66ATP synthase subunit O, mitochondrial OS=Mus muscu... [more]
ATPO_RAT1.694e-2131.66ATP synthase subunit O, mitochondrial OS=Rattus no... [more]
ATPO_PIG1.694e-2131.98ATP synthase subunit O, mitochondrial OS=Sus scrof... [more]
ATPO_CALMO2.212e-2131.66ATP synthase subunit O, mitochondrial OS=Callicebu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1DC10ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257846 ID=DY257846; Name=DY257846; organism=Citrus clementina; type=EST; length=1128bp
GAACTGGGCAGATTAGGGTTTTTAAATTTAGGAAATGGCAACGGTAAGTC
GTATCAGATCGAGCCTCTCTGTATTCAACAAGATTCTCAGATCCAATTCT
CAGCTATCCCCTCCTCATCCACAGTTATCGAAAGGTTTTTCCACTTCGTC
GGTGCAGAAGGAGCAAAAAGTTAAGGTGCCTCTGGCTTTGTTTGGAGGTT
CAGGAAATTATGCCTCTGCTCTGTACATTGCCGCAGTGAAAACTAACGCA
CTGGAGAAGGTTGAGTCTGAGATTCTTGACCTTGTCGAGGCTTCAAAGAA
GGCTGATACATATTTTCAGTTCACAAAGGACTTGTCTGTGCCTGCAGAGA
CAAGAGTTAAGGCCATTAACGAAATCTGTACTCAGGCTAAATTTTCAGAT
GTTACGAAGCACTTCTTAGTTGTTTTGGCTGAGAATGGGAGGCTTAGAAA
CTTAGACACCATCGCTAAGAGGTTTGTGGAGTTAACCATGGCACACAAGG
GCGAAGTAAAAGTTACTGTTACATCCGTTATTCCACTTCCCCCAGAAGAA
GAGAGAGAGTTGAAAGAGACACTGCAAGAGACACTTGGCCAAGGGAAGAA
AGTCAAGGTTGAACAGAAGGTTGATCCTAGCATTCTTGGTGGGCTCGTAG
TAGAGTTTGGGCAAAAGGTGTTTGACATGTCCATTAAGTCTAGGGCGCGG
CAGATGGAGAGGTTCCTACGTGAGCCCATTCATTTTGGCACCCTCTAAAA
AGGCTGCCACAGCCCCAGGGCGCAAATTTTTAAGATGATTATGCAACAAC
TGGAACGCTCCAAGAAGTAAAAGAACCATTCAAGCTCTTGTTTGATGCTG
TTTGCTTGTGCTCCGCCATTTCTGAATGAATTGAATCATGGGCAAAATAA
AATTCACATCTTGATCACTTTGCTTTCATGGCAAATGGGTTCTGATGGAC
ATCAACATTTTTTGTTTGGGGTTTCGGTTCGGACATTTACCTTTTAAGGG
GAATAATTTGGTTTGTTCAAAATAAATTACTCGGTCCCTGGCAATGGAAA
CGGGTTCCTCAGGGACAAAAGCCTCTTTTTTAGGAAAAATACCGGTTGGT
TAAAAAAAGTGGTTCCCCATTTTTTTTT
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