DY257855

Overview
NameDY257855
Unique NameDY257855
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length815
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1037 contig Ccv1_Contig1037:1..815. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257855 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 3.430e-81
Identity = 142/148 (95.95%), Postives = 146/148 (98.65%), Query Frame = 2
Query:   80 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSNSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 523
            MASKRI KELKDLQKDPP SCSAGPVA+DMFHWQATIMGP++SP+AGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 148          
BLAST of DY257855 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 2.904e-80
Identity = 139/148 (93.92%), Postives = 146/148 (98.65%), Query Frame = 2
Query:   80 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSNSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 523
            MASKRI KELKDLQKDPP SCSAGPVA+DMFHWQATIMGPS+SP++GGVFLV+IHFPPDYPFKPPKVAFRTKVFHPN+NSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE+TARSWTQKYAMG
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVNSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 148          
BLAST of DY257855 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.441e-79
Identity = 139/148 (93.92%), Postives = 144/148 (97.30%), Query Frame = 2
Query:   80 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSNSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 523
            MASKRI KELKDLQKDPP SCSAGPVA+DMFHWQATIMGPS SP+AGGVFLV+IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTD+ KYE+TARSWTQKYAMG
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARSWTQKYAMG 148          
BLAST of DY257855 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.882e-79
Identity = 138/148 (93.24%), Postives = 144/148 (97.30%), Query Frame = 2
Query:   80 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSNSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 523
            MASKRI KELKDLQKDPP SCSAGPVA+DMFHWQATIMGP+ SP++GGVFLV+IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE TAR+WTQKYAMG
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARNWTQKYAMG 148          
BLAST of DY257855 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 5.477e-79
Identity = 137/148 (92.57%), Postives = 145/148 (97.97%), Query Frame = 2
Query:   80 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSNSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 523
            MASKRI KELKDLQKDPP SCSAGPVA+DMFHWQATIMGPS+SP++GGVFLV+IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTD+ KYE+TAR+WTQKYAMG
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARTWTQKYAMG 148          
BLAST of DY257855 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 293.508 bits (750), Expect = 9.342e-79
Identity = 136/148 (91.89%), Postives = 145/148 (97.97%), Query Frame = 2
Query:   80 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSNSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 523
            MASKRI KELKDLQKDPP++CSAGPVA+DMFHWQATIMGP  SP+AGGVFLVSIHFPPDYPFKPPKV+F+TKV+HPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDR+KYE+TARSWTQKYAMG
Sbjct:    1 MASKRILKELKDLQKDPPSNCSAGPVAEDMFHWQATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVSFKTKVYHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYESTARSWTQKYAMG 148          
BLAST of DY257855 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 7.908e-78
Identity = 133/148 (89.86%), Postives = 143/148 (96.62%), Query Frame = 2
Query:   80 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSNSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 523
            MASKRINKEL+DLQ+DPP SCSAGP  DDMF WQATIMGP++SPFAGGVFLV+IHFPPDYPFKPPKVAFRTKV+HPNINSNGSICLDILKEQWSPALT+SKVLLSICSLLTDPNPDDPLVPEIAH+YKTDR KYE+TA+SWTQKYAMG
Sbjct:    1 MASKRINKELRDLQRDPPVSCSAGPTGDDMFQWQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAFRTKVYHPNINSNGSICLDILKEQWSPALTVSKVLLSICSLLTDPNPDDPLVPEIAHIYKTDRVKYESTAQSWTQKYAMG 148          
BLAST of DY257855 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 3.438e-73
Identity = 124/147 (84.35%), Postives = 138/147 (93.88%), Query Frame = 2
Query:   80 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSNSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 520
            MA++RI KELK+LQ+DPP SCSAGP  +DMFHWQATIMGP+ SP++GGVFLV+IHFPPDYPFKPPKV FRTKVFHPNINSNG+ICLDILK+QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAH+YKTD+ KYE  ARSWTQKYA+
Sbjct:    1 MATRRILKELKELQRDPPVSCSAGPTGEDMFHWQATIMGPNESPYSGGVFLVNIHFPPDYPFKPPKVVFRTKVFHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHIYKTDKTKYEAMARSWTQKYAL 147          
BLAST of DY257855 vs. ExPASy Swiss-Prot
Match: UBC4_SCHPO (Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe GN=ubc4 PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 2.086e-70
Identity = 119/147 (80.95%), Postives = 137/147 (93.20%), Query Frame = 2
Query:   80 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSNSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 520
            MA KRIN+EL DL KDPP+SCSAGPV DD+FHWQATIMGP++SP+AGGVF +SIHFP DYPFKPPKV F T+++HPNINSNGSICLDIL++QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAH+YKTDR++YE +AR WT+KYA+
Sbjct:    1 MALKRINRELADLGKDPPSSCSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHVYKTDRSRYELSAREWTRKYAI 147          
BLAST of DY257855 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 263.462 bits (672), Expect = 1.035e-69
Identity = 118/147 (80.27%), Postives = 137/147 (93.20%), Query Frame = 2
Query:   80 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSNSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 520
            MA KRINKEL DL +DPP+SCSAGPV +D+FHWQATIMGPS+SP+AGGVF ++IHFP DYPFKPPKV F T+++HPNINSNGSICLDIL++QWSPALTISKVLLSICS+LTDPNPDDPLVPEIAH+YKT RA+YE+TAR WT+KYA+
Sbjct:    1 MALKRINKELTDLGRDPPSSCSAGPVGEDLFHWQATIMGPSDSPYAGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDDPLVPEIAHVYKTARAQYESTAREWTRKYAI 147          
The following BLAST results are available for this feature:
BLAST of DY257855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBC4_SOLLC3.430e-8195.95Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC28_ARATH2.904e-8093.92Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC10_ARATH1.441e-7993.92Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UBC8_ARATH1.882e-7993.24Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC9_ARATH5.477e-7992.57SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC11_ARATH9.342e-7991.89Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UBC30_ARATH7.908e-7889.86Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC29_ARATH3.438e-7384.35Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBC4_SCHPO2.086e-7080.95Ubiquitin-conjugating enzyme E2 4 OS=Schizosacchar... [more]
UBC1_MAGGR1.035e-6980.27Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1DE01ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257855 ID=DY257855; Name=DY257855; organism=Citrus clementina; type=EST; length=815bp
GCGGGGGACTTTGACTCGCAACGTAAAATAACACCAGACCCAAACTCTCA
GGCCACAAAGTTTGTTGAGAAATTCCCAGATGGCTTCAAAACGGATCAAC
AAGGAGTTGAAGGACCTACAGAAGGACCCTCCTGCTTCTTGTAGCGCTGG
CCCTGTTGCTGATGACATGTTCCATTGGCAAGCAACAATTATGGGCCCAT
CAAACAGCCCATTTGCTGGGGGTGTATTTCTTGTATCCATTCATTTCCCA
CCTGATTATCCATTCAAGCCACCGAAGGTGGCCTTCCGTACTAAGGTTTT
CCACCCTAACATCAACAGCAATGGTAGCATCTGTCTTGACATTCTCAAGG
AGCAGTGGAGCCCTGCTTTGACAATATCCAAGGTACTTCTGTCAATTTGC
TCACTACTTACTGATCCGAACCCAGATGACCCACTTGTGCCTGAGATTGC
TCACATGTACAAGACTGACAGAGCCAAATATGAGACTACTGCTCGATCCT
GGACCCAGAAGTATGCCATGGGTTAAGAGGGGCTAGGCTGTACGCCCCTG
AGAACATTAATGGCTTGTGGTCCTATTAGTAAATAATAGAAATAAGTTTG
TTTCAGATATTAAAAGACGATATTTGGTTTTGTTTACTAAGTTGTTAAAA
GGTTTTATGTGGGGTTACTTTCCAATTTAGCATTGTCCTTCAATACTTAA
ATTATAATTTACTGCAGAATGGAGCTGCCTTTGCCTTTATTTATTGTTGG
TAATGGTCTATTTGAAGGCTTCTAGAATGCGATTTATAGTAATGAACGGA
ACCTCTCCATTCCTG
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