DY257858

Overview
NameDY257858
Unique NameDY257858
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length349
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9507 contig Ccv1_Contig9507:734..1082. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257858 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.277e-17
Identity = 35/54 (64.81%), Postives = 43/54 (79.63%), Query Frame = 1
Query:    4 PGYGLTTNIINGGIECGQGCNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 165
            PGYG+ TNI+NGG+ECG G +D V NRIGF+  +CG FGI  G NLDCY+Q+PF
Sbjct:  276 PGYGVITNIVNGGLECGHGPDDRVANRIGFYQRYCGAFGIGTGGNLDCYNQRPF 329          
BLAST of DY257858 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.067e-16
Identity = 35/56 (62.50%), Postives = 44/56 (78.57%), Query Frame = 1
Query:    1 LPGYGLTTNIINGGIECGQGCNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 168
            +PGYG+ TNIINGGIECG G NDAV +RIG++  +CG   + PG NLDCY+Q+ FG
Sbjct:  196 VPGYGVITNIINGGIECGIGRNDAVEDRIGYYRRYCGMLNVAPGENLDCYNQRNFG 251          
BLAST of DY257858 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.604e-16
Identity = 33/56 (58.93%), Postives = 44/56 (78.57%), Query Frame = 1
Query:    1 LPGYGLTTNIINGGIECGQGCNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 168
            LPGYG+ TN++NGG+ECG+G N  V +R+GFF  +CG  G+  G NLDCY+Q+PFG
Sbjct:  188 LPGYGVLTNLLNGGLECGKGPNPQVADRLGFFRRYCGLLGVGTGNNLDCYNQRPFG 243          
BLAST of DY257858 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.026e-15
Identity = 38/61 (62.30%), Postives = 45/61 (73.77%), Query Frame = 1
Query:    1 LPGYGLTTNIINGGIECGQGC-NDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLILM 180
            +PGYG+ TNIINGGIECGQG  N+A  NRIGF+ T+C   G   G NLDCY Q+PFG  L+
Sbjct:  237 VPGYGVITNIINGGIECGQGGPNNANENRIGFYKTYCDSLGTTYGSNLDCYQQRPFGYGLL 297          
BLAST of DY257858 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.340e-15
Identity = 37/64 (57.81%), Postives = 46/64 (71.88%), Query Frame = 1
Query:    1 LPGYGLTTNIINGGIECGQGCNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLILMARSM 192
            LPGYG  TNIINGG+ECG+G +  V++RIGF+  +C  FGI  G NLDCY Q+PFG  L   S+
Sbjct:  253 LPGYGTVTNIINGGLECGRGQDSRVQDRIGFYKRYCDIFGIGYGDNLDCYSQRPFGSSLPLSSI 316          
BLAST of DY257858 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.984e-15
Identity = 36/67 (53.73%), Postives = 46/67 (68.66%), Query Frame = 1
Query:    1 LPGYGLTTNIINGGIECGQGCNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLILMARSM*SS 201
            LPGYG  TNIINGG+ECG+G +  V++RIGFF  +C   G+  G NLDCY Q PFG  L+   + +S
Sbjct:  261 LPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSLLLSDLVTS 327          
BLAST of DY257858 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 2.984e-15
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 1
Query:    1 LPGYGLTTNIINGGIECGQGCNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 165
            LPGYG+ TNIINGG+ECG+G +  V +RIGF+  +C  FG+ PG NLDCY+Q+ F
Sbjct:  272 LPGYGVITNIINGGLECGRGQDGRVADRIGFYQRYCNIFGVNPGGNLDCYNQRSF 326          
BLAST of DY257858 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.984e-15
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 1
Query:    1 LPGYGLTTNIINGGIECGQGCNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 168
            +PGYG+ TNIINGG+ECG+G N  V +RIGF+  +C   G+  G NLDCY+Q PFG
Sbjct:  261 VPGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFG 316          
BLAST of DY257858 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.091e-15
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 1
Query:    1 LPGYGLTTNIINGGIECGQGCNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 168
            LPGYG  TNIINGG+ECG+G +  V++RIGFF  +C   G+  G NLDCY Q PFG
Sbjct:  260 LPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFG 315          
BLAST of DY257858 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.683e-15
Identity = 36/61 (59.02%), Postives = 43/61 (70.49%), Query Frame = 1
Query:    1 LPGYGLTTNIINGGIECGQGCNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLILMA 183
            +PGYG+ TNIINGG+ECG G +D V NRIGF+  +C   GI  G NLDCY Q+PF   L A
Sbjct:  272 VPGYGVITNIINGGLECGFGPDDRVANRIGFYQRYCDVLGIGYGSNLDCYDQRPFNSGLTA 332          
The following BLAST results are available for this feature:
BLAST of DY257858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
CHI2_ORYSJ9.277e-1764.81Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIQ_TOBAC2.067e-1662.50Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHIT_CARPA4.604e-1658.93Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHIB_POPTR1.026e-1562.30Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHI2_PEA1.340e-1557.81Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHIT_PHAVU2.984e-1553.73Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHIB_ARATH2.984e-1560.00Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI1_GOSHI2.984e-1558.93Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI5_PHAVU5.091e-1560.71Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI9_ORYSJ8.683e-1559.02Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1DE08ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257858 ID=DY257858; Name=DY257858; organism=Citrus clementina; type=EST; length=349bp
CTTCCGGGATACGGTCTAACTACAAATATAATCAACGGTGGAATTGAATG
TGGCCAAGGTTGTAATGACGCTGTACGTAACCGTATTGGGTTCTTTAGCA
CTTTCTGTGGCAAGTTTGGGATTCAGCCTGGTTACAATCTTGATTGCTAC
CACCAACAGCCTTTTGGCCTTATTCTGATGGCACGATCTATGTGATCATC
ATGATCAACGTTTTAGTAAAATAAGCTTAATAAAAGCTACTTAATAAAAA
CTTTAGATGTCACACTTGTAGGTGGACAACTAAGTTGTTACGCTCTTATT
GTAAATAAATTAAATAAGACTGATCCAACATGGATCAATGAGTCTTCTC
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