DY257864

Overview
NameDY257864
Unique NameDY257864
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1198
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1038 contig Ccv1_Contig1038:1..1198. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257864 vs. ExPASy Swiss-Prot
Match: SK2L2_MOUSE (Superkiller viralicidic activity 2-like 2 OS=Mus musculus GN=Skiv2l2 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 3.827e-51
Identity = 101/195 (51.79%), Postives = 138/195 (70.77%), Query Frame = 1
Query:  262 DELKNRSRVLKKLGHINADGVVQLKGQAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLRQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL 846
            DELK R RVL++LG   +  V+++KG+ AC I + DELL+TE+MFNG FNDL   Q  AL SCF+  + SSE   L  +LA PLRQ+QE A++IA++  E KLE++ + Y+ S+ +P LMDV+Y W+ GATFA + +MTD+FEGSIIR  RRL+E L Q+  AA+A+G   LE KFA     ++R I+F+ SLYL
Sbjct:  847 DELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSSEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYL-SSFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRDIVFAASLYL 1040          
BLAST of DY257864 vs. ExPASy Swiss-Prot
Match: SK2L2_HUMAN (Superkiller viralicidic activity 2-like 2 OS=Homo sapiens GN=SKIV2L2 PE=1 SV=3)

HSP 1 Score: 202.216 bits (513), Expect = 4.998e-51
Identity = 101/195 (51.79%), Postives = 138/195 (70.77%), Query Frame = 1
Query:  262 DELKNRSRVLKKLGHINADGVVQLKGQAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLRQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL 846
            DELK R RVL++LG   +  V+++KG+ AC I + DELL+TE+MFNG FNDL   Q  AL SCF+  + SSE   L  +LA PLRQ+QE A++IA++  E KLE++ + Y+ S+ +P LMDV+Y W+ GATFA + +MTD+FEGSIIR  RRL+E L Q+  AA+A+G   LE KFA     ++R I+F+ SLYL
Sbjct:  849 DELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYL-SSFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRDIVFAASLYL 1042          
BLAST of DY257864 vs. ExPASy Swiss-Prot
Match: YDVG_SCHPO (Uncharacterized helicase C6F12.16c OS=Schizosaccharomyces pombe GN=SPAC6F12.16c PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 3.706e-46
Identity = 95/196 (48.47%), Postives = 137/196 (69.90%), Query Frame = 1
Query:  262 DELKNRSRVLKKLGHINADGVVQLKGQAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSS-EQINLRMELAKPLRQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL 846
            DEL +R RVL++LG   +D V+++KG+ AC I +GD LL+TEL+FNG FNDL   Q AAL SC +  +KS  E   ++ ELA PL+ LQE AR+IA++  E K E+N +EYV S  +P LM+V+Y W+ GA+FA++ +MTD++EGS+IR  RRL+E + Q+  AA+ +G  +L++K       + R I+FS SLYL
Sbjct:  923 DELNSRKRVLRRLGFTTSDDVIEVKGRVACEISSGDGLLLTELIFNGMFNDLTPEQCAALLSCLVFQEKSEVENQRMKEELAGPLKILQEMARRIAKVSKESKQELNEEEYVNS-FKPSLMEVVYAWAHGASFAQICKMTDVYEGSLIRMFRRLEELIRQMVDAAKVIGNTSLQQKMEDTIACIHRDIVFSASLYL 1117          
BLAST of DY257864 vs. ExPASy Swiss-Prot
Match: MTR4_CAEEL (mRNA transport homolog 4 OS=Caenorhabditis elegans GN=mtr-4 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 3.138e-45
Identity = 95/195 (48.72%), Postives = 133/195 (68.21%), Query Frame = 1
Query:  262 DELKNRSRVLKKLGHINADGVVQLKGQAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLRQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL 846
            +EL NR RVL++LG++  D  + LKG  AC +   DEL++TE++  G FN LD  Q AAL SCF+  DK +    L  EL   L +L E AR +A++ NECK+EV  D+YV S+  P LMDV+Y W  GATF+E+++ TD+FEGSIIR+ RRL+E L ++  AA+A+    LE+KF  A ++L+R I+F+ SLYL
Sbjct:  834 EELNNRKRVLRRLGYLGNDDALVLKGSVACELSASDELILTEMLLKGIFNTLDVAQTAALLSCFVFQDKCAAP-KLATELQTCLSELHEQARNVAKVSNECKMEVMEDKYV-SSFNPGLMDVVYQWVNGATFSEIVKTTDVFEGSIIRTLRRLEEVLREMINAAKALANKELEQKFEDARKNLKRDIVFAASLYL 1026          
BLAST of DY257864 vs. ExPASy Swiss-Prot
Match: MTR4_YEAST (ATP-dependent RNA helicase DOB1 OS=Saccharomyces cerevisiae GN=MTR4 PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.116e-42
Identity = 88/195 (45.13%), Postives = 133/195 (68.21%), Query Frame = 1
Query:  262 DELKNRSRVLKKLGHINADGVVQLKGQAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLRQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL 846
            D+L+ R RVL++LG    + +++LKG+ AC I +GDELL+TEL+FNG FN+L   Q AAL SCF   ++  E   L+ ELA+PL+ ++E A KIA+I  + K+EV   +YVES  R  LM+V+Y W +GATF ++ +MTD++EGS+IR  +RL+E + +L   A  +G  +L++K  A  + + R I+ + SLYL
Sbjct:  880 DDLRRRKRVLRRLGFCTPNDIIELKGRVACEISSGDELLLTELIFNGNFNELKPEQAAALLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKIAKIMKDSKIEVVEKDYVES-FRHELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKEKMEAVLKLIHRDIVSAGSLYL 1073          
BLAST of DY257864 vs. ExPASy Swiss-Prot
Match: YE02_SCHPO (Uncharacterized helicase C17H9.02 OS=Schizosaccharomyces pombe GN=SPAC17H9.02 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 2.944e-35
Identity = 80/195 (41.03%), Postives = 120/195 (61.54%), Query Frame = 1
Query:  265 ELKNRSRVLKKLGHINADGVVQLKGQAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSS-EQINLRMELAKPLRQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL 846
            ELK R RVL++LG    + V+ +KG+ AC I +GDELL+ EL+F G FN +   ++AA  SCF+  DKS    +NL+    K    + E+A++IA +  E KL+ N  +Y+    +P +M+ +  W  GA+F E+  ++ ++EGSI+R+ RRLDE L QL  AA  +G   L++K     + L R I+FS SLYL
Sbjct:  837 ELKIRQRVLRRLGFCTLENVIDIKGRVACEITSGDELLLVELIFQGFFNQMPPEEIAAALSCFVYEDKSEVSTLNLKEPFKKMYLTIIEAAKRIATVSLESKLQFNESDYLHQ-FKPDIMEPVSLWINGASFQEICIVSKLYEGSIVRTFRRLDELLKQLEHAAIVLGNNELKEKSVLTEQKLHRDIIFSASLYL 1030          
BLAST of DY257864 vs. ExPASy Swiss-Prot
Match: YJV3_SCHPO (Uncharacterized helicase C550.03c OS=Schizosaccharomyces pombe GN=SPCC550.03c PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 3.262e-26
Identity = 68/195 (34.87%), Postives = 110/195 (56.41%), Query Frame = 1
Query:  265 ELKNRSRVLKKLGHINADGVVQLKGQAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLRQLQESARKIAEIQNECK-LEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL 846
            + + R +VL++LG+I+A+  V LKG+ AC I++  EL++TEL+   +  D    +  AL S F+  +K+  +  +   L K    +   A K+ +IQ   + L  N     ES  R  LM+V Y W++G +F  +  +TD+ EGSI+R+  RLDE L + R AA+ VG+ ++  K       +RR I+F  SLY+
Sbjct: 1019 DYEQRIKVLQELGYIDAERTVLLKGRVACEINSTSELVLTELILENSLADFSCEETIALLSAFVFDEKTEVEPTISPHLQKGKEMILSVAEKVNQIQEHYQVLYFNEGNDFESQPRFGLMEVCYEWARGMSFNRITDLTDVLEGSIVRTIIRLDEVLRECRGAARVVGDSSMYTKMEECQNLIRRNIVFCPSLYM 1213          
BLAST of DY257864 vs. ExPASy Swiss-Prot
Match: SKIV2_HUMAN (Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 2.585e-23
Identity = 67/193 (34.72%), Postives = 108/193 (55.96%), Query Frame = 1
Query:  265 ELKNRSRVLKKLGHINADGVVQLKGQAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLRQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLY 843
            E   R  VL+ LG+++  G V+L G+ AC + +  ELL+TELMF+   + L   ++AAL S  +          L   L + + +++  A++I E+Q  C L   V+E+V   +   L++V+Y W++G  F+E+  ++   EG ++R  +RL E    LR AA+ VGE  L  K   A+  LRR I+F+ SLY
Sbjct: 1054 EYHQRVEVLRTLGYVDEAGTVKLAGRVACAMSS-HELLLTELMFDNALSTLRPEEIAALLSGLVCQSPGDAGDQLPNTLKQGIERVRAVAKRIGEVQVACGLNQTVEEFV-GELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCIQRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLY 1244          
BLAST of DY257864 vs. ExPASy Swiss-Prot
Match: SKI2_YEAST (Antiviral helicase SKI2 OS=Saccharomyces cerevisiae GN=SKI2 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 3.493e-20
Identity = 60/197 (30.46%), Postives = 112/197 (56.85%), Query Frame = 1
Query:  265 ELKNRSRVLKKLGHINADGVVQLKGQAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQIN--LRMELAKPLRQLQESARKIAEIQNECKLEVNVDEYVESTVRPF-LMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL 846
            + + R  VLK    I+ +  V LKG+ AC I++G EL++TEL+ +      +  ++ AL S F+   K+ E+    +   LAK  ++++E  +K+  + N  ++ +  DE      + F +M+V+Y W++G +F E+++M+   EG+++R    LDE   +++ A+  +G   L  K + A E ++R I+F+ SLYL
Sbjct: 1091 DYEKRLAVLKDTEFIDQNHNVLLKGRVACEINSGYELVLTELILDNFLGSFEPEEIVALLSVFVYEGKTREEEPPIVTPRLAKGKQRIEEIYKKMLCVFNTHQIPLTQDEAEFLDRKRFAMMNVVYEWARGLSFKEIMEMSPEAEGTVVRVITWLDEICREVKTASIIIGNSTLHMKMSRAQELIKRDIVFAASLYL 1287          
The following BLAST results are available for this feature:
BLAST of DY257864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
SK2L2_MOUSE3.827e-5151.79Superkiller viralicidic activity 2-like 2 OS=Mus m... [more]
SK2L2_HUMAN4.998e-5151.79Superkiller viralicidic activity 2-like 2 OS=Homo ... [more]
YDVG_SCHPO3.706e-4648.47Uncharacterized helicase C6F12.16c OS=Schizosaccha... [more]
MTR4_CAEEL3.138e-4548.72mRNA transport homolog 4 OS=Caenorhabditis elegans... [more]
MTR4_YEAST1.116e-4245.13ATP-dependent RNA helicase DOB1 OS=Saccharomyces c... [more]
YE02_SCHPO2.944e-3541.03Uncharacterized helicase C17H9.02 OS=Schizosacchar... [more]
YJV3_SCHPO3.262e-2634.87Uncharacterized helicase C550.03c OS=Schizosacchar... [more]
SKIV2_HUMAN2.585e-2334.72Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=2[more]
SKI2_YEAST3.493e-2030.46Antiviral helicase SKI2 OS=Saccharomyces cerevisia... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB1DF05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257864 ID=DY257864; Name=DY257864; organism=Citrus clementina; type=EST; length=1198bp
GCGGGGAGGTGAATCATGAGATTCACCAGCTCATGTCAAAAATGCGAGAC
TCCCAGGTACTTTCCACTGCAAGATTCTCCCTCAGTAGATCTGACGTGAG
CTTGAAATACCAGGATTATTGATATTATTACTCCCAGCTATGAAATTGTG
TAAATATTTTGTTTTTATCACCGTTGTGACCGCTTGAAATTGCATGTTGC
TGTTTTTACATGTTTGATACTTTTATTCGTTGGCACTATTTTTCAGATCC
AAAAATTCCGGGATGAACTTAAAAACCGCTCACGGGTCTTGAAAAAACTT
GGCCATATCAATGCTGATGGTGTTGTCCAGTTGAAGGGACAAGCAGCATG
TTTGATAGACACAGGAGATGAACTCCTTGTTACTGAGCTCATGTTCAATG
GTACATTCAATGATCTTGATCATCACCAAGTTGCAGCTCTTGCAAGTTGT
TTTATTCCAGTGGACAAATCAAGTGAGCAAATAAATTTGAGAATGGAGCT
TGCTAAACCATTACGACAACTTCAAGAGAGTGCGAGAAAAATAGCAGAGA
TACAAAATGAGTGCAAACTGGAAGTAAATGTTGATGAATACGTGGAGTCA
ACTGTCAGGCCGTTTTTGATGGATGTGATTTACTGTTGGTCAAAGGGTGC
AACTTTCGCAGAGGTTATTCAAATGACTGATATATTTGAGGGTAGTATCA
TTAGGAGTGCTAGAAGACTCGATGAGTTTTTGAACCAGTTGCGTGCAGCT
GCTCAAGCTGTTGGAGAAGTTAATTTGGAGAAGAAGTTTGCTGCAGCCAG
TGAAAGCCTTCGCCGAGGCATTATGTTTTCGAATTCCCTTTATTTGTGAA
ATACGTGTTTGCAGGTTATTGTAAGACGTGGATTTCTATAGCACTTCAGC
ACTTAAGACTCCCTCTCGCGGATACAAGTTTCTGGCGGCATTTCATACAT
GTTAGATGTGCTGTGCTTGGGAAACTATGGGTTCCTCCTTTCACCAGGTT
TGGTTTCCCTTTTCCTTTTAATTTAAATGGTGGTTTTTCCGGAAAAAAGG
AAAAGGTTTGGTTTTTTAACGGGGTCCCCGGCTGGCGGGGATTTTGAAAT
TAAAAAGTAAATATAAAACCTTCCCGATTTAAGGAAAAAATTTAAATATT
TCTAATTTTGTGGAATTTTTTGCGAACTTTTTATTTTTTAAAAAATTT
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