DY257865

Overview
NameDY257865
Unique NameDY257865
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1034
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15517 contig Ccv1_Contig15517:17..1050. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257865 vs. ExPASy Swiss-Prot
Match: SYP52_ARATH (Syntaxin-52 OS=Arabidopsis thaliana GN=SYP52 PE=1 SV=1)

HSP 1 Score: 320.857 bits (821), Expect = 7.815e-87
Identity = 158/212 (74.53%), Postives = 187/212 (88.21%), Query Frame = 3
Query:  147 MASASDSWIKEYNEAIKLADDINGMISERSSMPASGPESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPISEKEMNRRKDMLANLRSKVNQMASTLNMSNFANRDSLLGPEIKSADVMNRATGLDNQGLVGFQRQIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKGGCTCMCM 782
            MAS+SD W++EYNEA+KL++DINGM+SER++   +GP++QR ASAIRRKITILGTRLDSLQSLL K+PGKQ +SEKEMNRRKDM+ NLRSK NQ+AS LNMSNFANRDSL G ++K  D +NR +G+DNQG+V FQRQ+MREQDEGLEKLEETV+STKHIALAVNEEL L TRLIDDLD  VD+TDSRLRRVQK+LA++NK  K GC+CM M
Sbjct:    1 MASSSDPWMREYNEALKLSEDINGMMSERNASGLTGPDAQRRASAIRRKITILGTRLDSLQSLLVKVPGKQHVSEKEMNRRKDMVGNLRSKTNQVASALNMSNFANRDSLFGTDLKPDDAINRVSGMDNQGIVVFQRQVMREQDEGLEKLEETVMSTKHIALAVNEELTLQTRLIDDLDYDVDITDSRLRRVQKSLALMNKSMKSGCSCMSM 212          
BLAST of DY257865 vs. ExPASy Swiss-Prot
Match: SYP51_ARATH (Syntaxin-51 OS=Arabidopsis thaliana GN=SYP51 PE=1 SV=1)

HSP 1 Score: 320.857 bits (821), Expect = 7.815e-87
Identity = 159/212 (75.00%), Postives = 189/212 (89.15%), Query Frame = 3
Query:  147 MASASDSWIKEYNEAIKLADDINGMISERSSMPASGPESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPISEKEMNRRKDMLANLRSKVNQMASTLNMSNFANRDSLLGPEIKSADVMNRATGLDNQGLVGFQRQIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKGGCTCMCM 782
            MAS+SDSW++ YNEA+KL+++INGMISERSS   +GP++QR ASAIRRKITI G +LDSLQSLL+++ GK PISEKEMNRRKDM+ NLRSK NQMA+ LNMSNFANRDSLLGP+IK  D M+R TG+DNQG+VG+QRQ+MREQDEGLE+LE TV+STKHIALAV+EELDL TRLIDDLD HVDVTDSRLRRVQK+LA++NK  + GC+CM M
Sbjct:    1 MASSSDSWMRAYNEALKLSEEINGMISERSSSAVTGPDAQRRASAIRRKITIFGNKLDSLQSLLAEIHGK-PISEKEMNRRKDMVGNLRSKANQMANALNMSNFANRDSLLGPDIKPDDSMSRVTGMDNQGIVGYQRQVMREQDEGLEQLEGTVMSTKHIALAVSEELDLQTRLIDDLDYHVDVTDSRLRRVQKSLAVMNKNMRSGCSCMSM 211          
BLAST of DY257865 vs. ExPASy Swiss-Prot
Match: STX8B_DICDI (Probable syntaxin-8B OS=Dictyostelium discoideum GN=syn8B PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.315e-17
Identity = 64/222 (28.83%), Postives = 111/222 (50.00%), Query Frame = 3
Query:  162 DSWIKEYNEAIKLADDINGMISERSSMPASGPES-QRHASA-IRRKITILGTRLDSLQSLLSKLPGKQPISEKEMNRRKDMLANLRSKVNQMASTLN--MSNFANRDSLLGPEIK-SADVMNRATG----------LDNQGLVGFQRQIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKGGCTCMCM 782
            D W+ E++  +KL + +   I E S    + P   Q++  A +R  +  +   +  LQ  L+     + I EKE+ RRK+ + +L S  NQ+ STL+  ++N + ++ L+G          NR  G           DNQ L   Q+ IMREQDE L+ L ++++  K++A A++ ELD H  ++DD++   D    RLR   + +  + +     C  +C+
Sbjct:    3 DYWLNEHDNIVKLINSLTADIKEYSIQQRNNPGIVQKNTPAKLRNGLVHITNEILRLQDSLT-YGNNRNIQEKELLRRKNKVESLISMKNQLNSTLDAAINNTSQKNELMGNNNGVGIGYSNRQFGKPKETEATKQFDNQQLFTNQQHIMREQDESLDLLSQSIMRQKNMAHAMSNELDQHNEMLDDVEIGTDAVSMRLRNANRRMETIKQNAGSTCMIVCI 223          
BLAST of DY257865 vs. ExPASy Swiss-Prot
Match: STX8_RAT (Syntaxin-8 OS=Rattus norvegicus GN=Stx8 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.567e-13
Identity = 54/215 (25.12%), Postives = 102/215 (47.44%), Query Frame = 3
Query:  156 ASDSWIKEYNEAIKLADDINGMISERSSMPASGPESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPISEKEMNRRKDMLANLRSKVNQMASTLNMSNFAN--------RDSLLGPEIKSA-------DVMNRATGLDNQGLVGFQRQIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRT 755
            A D W   Y+   ++A +I   I ER+     G ++ +    IR  +  L  ++D L+ LL +    + I++ E +RR+++L +L ++       L +++F N        R SL+  E K         +      GL    +   Q++I++EQD GL+ L   +   K +   +  ELD    +IDDL   V+ TD +LR   + + ++++++
Sbjct:    2 APDPWFSTYDSTCQIAQEIAEKIQERNQCERRGEKTPKLTLTIRTLLKNLKVKIDLLKDLLLRAVSTRQITQLEGDRRQNLLDDLVTR-----ERLLLASFKNEGSEPDLIRSSLMSEEAKRGTPNPWLCEEPEETRGLGFDEIRQQQQKIIQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLVDRKS 211          
BLAST of DY257865 vs. ExPASy Swiss-Prot
Match: STX8_MOUSE (Syntaxin-8 OS=Mus musculus GN=Stx8 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.567e-13
Identity = 54/215 (25.12%), Postives = 102/215 (47.44%), Query Frame = 3
Query:  156 ASDSWIKEYNEAIKLADDINGMISERSSMPASGPESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPISEKEMNRRKDMLANLRSKVNQMASTLNMSNFAN--------RDSLLGPEIKSA-------DVMNRATGLDNQGLVGFQRQIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRT 755
            A D W   Y+   ++A +I   I ER+     G ++ +    IR  +  L  ++D L+ LL +    + I++ E +RR+++L +L ++       L +++F N        R SL+  E K         +      GL    +   Q++I++EQD GL+ L   +   K +   +  ELD    +IDDL   V+ TD +LR   + + ++++++
Sbjct:    2 APDPWFSTYDSTCQIAQEIAEKIQERNQCERRGEKTPKLTLTIRTLLKNLKVKIDLLKDLLLRAVSTRQITQLEGDRRQNLLDDLVTR-----ERLLLASFKNEGAEPDLIRSSLMSEEAKRGTPNPWLCEEPEETRGLGFDEIRQQQQKIIQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLVDRKS 211          
BLAST of DY257865 vs. ExPASy Swiss-Prot
Match: STX8_HUMAN (Syntaxin-8 OS=Homo sapiens GN=STX8 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.079e-11
Identity = 52/215 (24.19%), Postives = 100/215 (46.51%), Query Frame = 3
Query:  156 ASDSWIKEYNEAIKLADDINGMISERSSMPASGPESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPISEKEMNRRKDMLANLRSKVNQMASTLNMSNFAN--------RDSLLGPEIKSA-------DVMNRATGLDNQGLVGFQRQIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRT 755
            A D W   Y+   ++A +I   I +R+     G ++ +    IR  +  L  ++  L+ LL +      I++ E +RR+++L +L ++       L +++F N        R SL+  E K         +      GL    +   Q++I++EQD GL+ L   +   K +   +  ELD    +IDDL   V+ TD +LR   + + ++++++
Sbjct:    2 APDPWFSTYDSTCQIAQEIAEKIQQRNQYERKGEKAPKLTVTIRALLQNLKEKIALLKDLLLRAVSTHQITQLEGDRRQNLLDDLVTR-----ERLLLASFKNEGAEPDLIRSSLMSEEAKRGAPNPWLFEEPEETRGLGFDEIRQQQQKIIQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRNETRRVNMVDRKS 211          
The following BLAST results are available for this feature:
BLAST of DY257865 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
SYP52_ARATH7.815e-8774.53Syntaxin-52 OS=Arabidopsis thaliana GN=SYP52 PE=1 ... [more]
SYP51_ARATH7.815e-8775.00Syntaxin-51 OS=Arabidopsis thaliana GN=SYP51 PE=1 ... [more]
STX8B_DICDI1.315e-1728.83Probable syntaxin-8B OS=Dictyostelium discoideum G... [more]
STX8_RAT2.567e-1325.12Syntaxin-8 OS=Rattus norvegicus GN=Stx8 PE=1 SV=1[more]
STX8_MOUSE2.567e-1325.12Syntaxin-8 OS=Mus musculus GN=Stx8 PE=2 SV=1[more]
STX8_HUMAN1.079e-1124.19Syntaxin-8 OS=Homo sapiens GN=STX8 PE=1 SV=2[more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAB1DF07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257865 ID=DY257865; Name=DY257865; organism=Citrus clementina; type=EST; length=1034bp
GAGGACGGGCCGTACAAAACCGGCAGTGTTGACGCTAATTCACGTCTTTT
AGCTCGTTAATGCGACTTAGCTTTGCTCCATCCTAAACTTCTCCAATCCA
ATCCCTCTCTCAGTCTAGAATCCGAAATCTACCCATAATCTGTTCAATGG
CTTCTGCTTCAGACTCGTGGATAAAGGAATACAATGAAGCAATAAAACTG
GCAGATGATATTAATGGCATGATATCAGAACGAAGTTCGATGCCCGCATC
TGGACCTGAATCCCAGCGTCATGCATCTGCCATACGGAGGAAGATTACCA
TATTAGGAACCAGATTGGATAGCTTGCAGTCCCTTTTATCTAAGCTTCCC
GGGAAGCAGCCCATTTCGGAGAAAGAGATGAATCGTCGGAAGGACATGCT
TGCTAATTTGAGATCCAAAGTGAATCAAATGGCTTCCACGTTGAACATGT
CAAACTTTGCTAATAGGGATAGCCTGCTTGGACCAGAGATAAAGTCAGCC
GATGTCATGAACCGAGCAACTGGCTTGGACAATCAGGGCCTTGTTGGTTT
TCAACGACAAATTATGAGAGAGCAAGATGAAGGGCTTGAGAAACTGGAGG
AGACAGTAGTCAGTACAAAGCATATTGCATTGGCAGTCAATGAAGAACTT
GACCTGCACACTAGACTTATTGATGACTTGGACCAGCATGTGGATGTTAC
AGATTCTCGCCTACGGCGAGTGCAGAAGAACCTGGCAATTTTGAATAAGC
GCACAAAGGGTGGTTGCACGTGTATGTGCATGCTTTTAGCTGTTATCGGA
ATCGTTGTTCTGGTTGTGGTCATATATATGTTGATCAAATACTTGTAAAA
CTCACAATGGTGAATGCAACTGTTTCCCCCTTGCTGTCTGTCTTTTGGTG
TGCTGGCTGGGTTTCGCTCTTAATGTTGTGTGCAAACTTTTCGTTTGATT
TTCTTGTTTTCTTTGTCTGCTTTGTAAGTGAAGTCTAAAGGTTGAAGGCA
TTCAACAACTCCGTAAATTTGGTAGTAAATTTGC
back to top