DY257870

Overview
NameDY257870
Unique NameDY257870
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length850
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig69 contig Ccv1_Contig69:824..1673. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257870 vs. ExPASy Swiss-Prot
Match: 2ABB_ARATH (Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Arabidopsis thaliana GN=PP2AB2 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.993e-32
Identity = 68/102 (66.67%), Postives = 79/102 (77.45%), Query Frame = 1
Query:    1 VATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTXXXXXXXXXXXXXVVRRVKGADNSALDANGNAFDFPMKLLHLAWHPSENSIACAASNSLYMYYA 306
            VATGSYSNLFRVFG S+GS E+ TLEASKNPMRRQ+QT             VVRR  G+++   +ANGNA+DF  KLLH+AWHP+ENSIACAA+NSLYMYYA
Sbjct:  402 VATGSYSNLFRVFGASQGSTEAATLEASKNPMRRQIQTPARPSRSIGSMTRVVRR--GSESPGTEANGNAYDFTTKLLHMAWHPTENSIACAAANSLYMYYA 501          
BLAST of DY257870 vs. ExPASy Swiss-Prot
Match: 2ABB_ORYSJ (Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Oryza sativa subsp. japonica GN=Os02g0224200 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.193e-31
Identity = 68/102 (66.67%), Postives = 77/102 (75.49%), Query Frame = 1
Query:    1 VATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTXXXXXXXXXXXXXVVRRVKGADNSALDANGNAFDFPMKLLHLAWHPSENSIACAASNSLYMYYA 306
            VATGSYSNLFRVFGC+ GSAE+TTLEAS+NPMRRQV                VRR  G +N  +DANGN++D   KLLHLAWHP+ENSIACAA+NSLYMYYA
Sbjct:  426 VATGSYSNLFRVFGCTPGSAEATTLEASRNPMRRQVANPTRPARTLTSLTRAVRR--GGENPGVDANGNSYDLSTKLLHLAWHPTENSIACAAANSLYMYYA 525          
BLAST of DY257870 vs. ExPASy Swiss-Prot
Match: 2ABB_ORYSI (Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Oryza sativa subsp. indica GN=OsI_006296 PE=2 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 1.193e-31
Identity = 68/102 (66.67%), Postives = 77/102 (75.49%), Query Frame = 1
Query:    1 VATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTXXXXXXXXXXXXXVVRRVKGADNSALDANGNAFDFPMKLLHLAWHPSENSIACAASNSLYMYYA 306
            VATGSYSNLFRVFGC+ GSAE+TTLEAS+NPMRRQV                VRR  G +N  +DANGN++D   KLLHLAWHP+ENSIACAA+NSLYMYYA
Sbjct:  426 VATGSYSNLFRVFGCTPGSAEATTLEASRNPMRRQVANPTRPARTLTSLTRAVRR--GGENPGVDANGNSYDLSTKLLHLAWHPTENSIACAAANSLYMYYA 525          
BLAST of DY257870 vs. ExPASy Swiss-Prot
Match: 2ABA_ORYSJ (Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Oryza sativa subsp. japonica GN=Os06g0563300 PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 2.657e-31
Identity = 67/102 (65.69%), Postives = 76/102 (74.51%), Query Frame = 1
Query:    1 VATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTXXXXXXXXXXXXXVVRRVKGADNSALDANGNAFDFPMKLLHLAWHPSENSIACAASNSLYMYYA 306
            VATGSY NLFRVFGC+ GS E+TTLEAS+NPMRRQ+                VRR  G +N  +DANGN+FDF  KLLHLAWHP+ENSIACAA+NSLYMYYA
Sbjct:  423 VATGSYGNLFRVFGCTPGSTEATTLEASRNPMRRQIVNPTRPTRTLTSLARGVRR--GGENQGVDANGNSFDFSTKLLHLAWHPTENSIACAAANSLYMYYA 522          
BLAST of DY257870 vs. ExPASy Swiss-Prot
Match: 2ABA_ARATH (Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Arabidopsis thaliana GN=PP2AB1 PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.509e-26
Identity = 61/101 (60.40%), Postives = 71/101 (70.30%), Query Frame = 1
Query:    4 ATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTXXXXXXXXXXXXXVVRRVKGADNSALDANGNAFDFPMKLLHLAWHPSENSIACAASNSLYMYYA 306
            ATGSYSNLFRVFG + GS E+ TLEAS+NPMRR V               VV R  G+++  +D N NA D+  KLLHLAWHP+ENSIACAA+NSLYMYYA
Sbjct:  415 ATGSYSNLFRVFGVAPGSTETATLEASRNPMRRHVPIPSRPSRALSSITRVVSR--GSESPGVDGNTNALDYTTKLLHLAWHPNENSIACAAANSLYMYYA 513          
The following BLAST results are available for this feature:
BLAST of DY257870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
2ABB_ARATH6.993e-3266.67Serine/threonine protein phosphatase 2A 55 kDa reg... [more]
2ABB_ORYSJ1.193e-3166.67Serine/threonine protein phosphatase 2A 55 kDa reg... [more]
2ABB_ORYSI1.193e-3166.67Serine/threonine protein phosphatase 2A 55 kDa reg... [more]
2ABA_ORYSJ2.657e-3165.69Serine/threonine protein phosphatase 2A 55 kDa reg... [more]
2ABA_ARATH1.509e-2660.40Serine/threonine protein phosphatase 2A 55 kDa reg... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB1DG08ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257870 ID=DY257870; Name=DY257870; organism=Citrus clementina; type=EST; length=850bp
GTGGCTACTGGTTCCTACAGCAATCTGTTTCGCGTGTTTGGTTGTTCTGA
GGGTAGTGCAGAATCAACAACACTGGAAGCCAGCAAAAATCCCATGAGGA
GACAAGTTCAAACCCCGTCAAGGCCTTCTAGACCTCTAGGAAGTCTTTCT
GGTGTTGTGAGGCGAGTAAAAGGAGCAGATAACTCTGCACTTGATGCAAA
TGGAAATGCTTTTGATTTCCCCATGAAGTTGTTGCACTTAGCTTGGCATC
CATCAGAAAACTCAATTGCATGCGCTGCTTCAAACAGCCTTTACATGTAT
TATGCATAAAGTTGGTCTGGGAAGATAATGACTTGTTCTATCTAGCCTGG
CAAAGCTTTTGTGGTCGCTTTTGGTGAAATCTGCTTTGCTCTTCCAAAAC
CAATAATGTGGAAGTCACGCTGCCGTCTATCAGACTTCTGGCAGTCCATT
GTAATTTTTAGCATATCCTCCATCAACACCAAGGAAATTATCAAGAAAAA
GCTTAAACTGATAATATTCCAAGAAGGCTATATACTCACTGATTTATTCT
TTTGTAAGGACAGGTAGAATTATCCTTTTTGTCTCTTGCTTAGGTCAAAG
AAAAATGTGGTGGTAGCTAGCCTATGACGGAGACAACCAGAGACAGAGCG
TTATAAATACTTTGCTTCGGTGCTGCCGGATGGGGAGTTAACCTGAAACT
TTGAGACGGAGCTTTCACGTTTGCATCAATTCTCATTGATATCTGGGGAT
TTTCAATCTTGTATCATTTGAACCCACAAATTCTCTAGGCTTGTGAAATT
TGATCATGATTATTATTGTTATTTAAATTCTAACCATTTTTTTCTCTCCC
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