DY257912

Overview
NameDY257912
Unique NameDY257912
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1159
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY257912_ssr786 microsatellite DY257912_ssr786:786..806. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY257912 vs. ExPASy Swiss-Prot
Match: CPRF2_PETCR (Light-inducible protein CPRF2 OS=Petroselinum crispum GN=CPRF2 PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 1.302e-24
Identity = 58/104 (55.77%), Postives = 78/104 (75.00%), Query Frame = 3 
Query:  438 PIDLKRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAEDVVSVGSLTCGLNQLLQSHLSPV 749
            P D KR+RRM+SNRESARRSR+RKQAHM ELE QV +L+ EN++L K+ TD +Q+Y +A  +NRVLK+D+E +RAKV++AE+ V       GLN + QS  S +
Sbjct:  196 PSDAKRVRRMLSNRESARRSRRRKQAHMTELETQVSQLRVENSSLLKRLTDISQRYNDAAVDNRVLKADIETMRAKVKMAEETV---KRVTGLNPMFQSMSSEI 296
[Close]
BLAST of DY257912 vs. ExPASy Swiss-Prot
Match: OP2_MAIZE (Regulatory protein opaque-2 OS=Zea mays GN=O2 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 4.485e-17
Identity = 45/101 (44.55%), Postives = 68/101 (67.33%), Query Frame = 3 
Query:  405 EAGPCEQSTDHPIDL--------KRIRRMVSNRESARRSRKRKQAHMQELELQVERLKGENATLYKQFTDAAQQYKEANTNNRVLKSDVEALRAKVRLAED 683
            +  P ++  D  +++        +R+R+  SNRESARRSR RK AH++ELE QV +LK EN+ L ++     Q+Y +AN +NRVL++D+E LRAKV++ ED
Sbjct:  204 DPSPSDEDMDGEVEILGFKMPTEERVRKKESNRESARRSRYRKAAHLKELEDQVAQLKAENSCLLRRIAALNQKYNDANVDNRVLRADMETLRAKVKMGED 304
The following BLAST results are available for this feature:
BLAST of DY257912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CPRF2_PETCR1.302e-2455.77Light-inducible protein CPRF2 OS=Petroselinum cris... [more]
OP2_MAIZE4.485e-1744.55Regulatory protein opaque-2 OS=Zea mays GN=O2 PE=1... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB2AF03ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257912 ID=DY257912; Name=DY257912; organism=Citrus clementina; type=EST; length=1159bp
GGTTCTGAAATTGTATCTTTGATCTTGTTGATACATGTATGGGTTAATTA
CCGTAAATTAATAAGAAAATTATTTTGCATGGAAATTAATGAAAGCAGGA
TGATGAGGATATGGCGATGAAAGGAATAATATCGTCAAATACAGGCACAG
GGGGAGTGAGTGTGACGACAGGAAACCTTCACAAACGATGGTCTCAATCT
CAAAATCCCAATTCCAGTAAGCGTTCCACAATTGTTACTACCACCACCAT
TGATTCCCAGTCATCCATTTGTGGCAGTGTTACTGGAAATTGGTCAGCTG
CAACTCCAACGTCTGGTGATAAAACAAACACCATAGATTGTAAAGCAAGA
CTAGCTTCAAGTGGTTCCTCCGCTGACCATTCTGATGACGAAGACCTGGA
AATTGAAGCTGGTCCTTGTGAACAAAGCACTGACCATCCCATTGATTTAA
AACGTATTCGAAGGATGGTCTCAAACCGGGAGTCTGCGAGGCGATCGAGG
AAAAGAAAGCAAGCACATATGCAAGAGCTTGAATTACAGGTTGAGCGACT
GAAAGGAGAAAATGCTACTCTATACAAGCAATTTACAGATGCTGCTCAAC
AGTATAAAGAGGCCAACACTAATAATAGAGTGCTTAAATCGGATGTGGAA
GCTCTTAGAGCCAAGGTGAGGTTGGCTGAAGACGTAGTGTCTGTAGGATC
CTTAACCTGTGGACTGAACCAACTTCTTCAGAGCCATTTGAGTCCAGTAC
TGCAACCAATCAATTCTATTATTACTAGTCATAACAATAATAATAATAAT
AATAATATTGGTCGTCATCAGCTTGCGAACGTCTCNGCAACGCTCACAGT
TCCTGGAAATGGCGCATCATTTTCTGNCATCTCCTCAACTTCTGGGCATC
GTTCATCCCTTGGAGTTGGACTTGCAAATCCCGACATCCACAATCCAATA
ACACTGCCGTAAACGATGCTTTAAGCTGTGTATCATCAGAAATTTGGGCT
TAATTAATTATTGAAACTTTTTCTTTTTCCTTTTTAAATTTTCAAAACTC
ATATGTCCATCTCCGCCTTCAAGGGTAATTGTCTGGGAAAAATTTAATTT
GATGTCCTAACTGATTTTGCTTTGAAAACTTTTATTTTAAACACTTTTTA
AAAGGTCCT
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