DY257917

Overview
NameDY257917
Unique NameDY257917
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1153
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY257917_ssr715 microsatellite DY257917_ssr715:715..732. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10109 contig Ccv1_Contig10109:4..1156. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257917 vs. ExPASy Swiss-Prot
Match: RGLG2_ARATH (E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 1.403e-20
Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = 3
Query:  750 GPTSYAPMVEAAVDIVEESGGPAHVLVIITSGQVATG--------SQQEQETIRSIVDASSYPLSIGL 929
            GPTS+AP+++ A+ IVE+SGG  HVLVII  GQV           S QEQ+T+ +IV AS  PLSI L
Sbjct:  222 GPTSFAPIIDMAMTIVEQSGGQYHVLVIIADGQVTRSVDTENGQLSPQEQKTVDAIVQASKLPLSIVL 289          

HSP 2 Score: 55.0694 bits (131), Expect = 1.403e-20
Identity = 24/47 (51.06%), Postives = 31/47 (65.96%), Query Frame = 1
Query:  922 LVFVGVGDGPWGSIQKFHDKIPALQFDNFHLVNFTGLRSKTTTTAEK 1062
            +V VGVGDGPW  +++F D IPA  FDNF  VNFT + +K    + K
Sbjct:  287 IVLVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMAKNKAQSLK 333          

HSP 3 Score: 98.2117 bits (243), Expect = 9.620e-20
Identity = 52/102 (50.98%), Postives = 63/102 (61.76%), Query Frame = 2
Query:  242 LIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQENDSPCQGFEHVLECYRKNVPNVQYFG 544
            LI GIDFT SN W G  SF  +SLH I  G + NPY++ I I G+ L  FD D  I CYGFGD +T D+ VFSF   D  C GFE VL  Y++ VP ++  G
Sbjct:  123 LIVGIDFTKSNEWTGARSFNRKSLHFI--GSSPNPYEQAITIIGRTLAAFDEDNLIPCYGFGDASTHDQDVFSFNSEDRFCNGFEEVLSRYKEIVPQLKLAG 222          
BLAST of DY257917 vs. ExPASy Swiss-Prot
Match: RGLG1_ARATH (E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana GN=RGLG1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.389e-18
Identity = 51/102 (50.00%), Postives = 62/102 (60.78%), Query Frame = 2
Query:  242 LIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQENDSPCQGFEHVLECYRKNVPNVQYFG 544
            LI GIDFT SN W G  SF  +SLH +   +T NPY++ I I G+ L  FD D  I CYGFGD +T D+ VFSF      C GFE VL  YR+ VP ++  G
Sbjct:  157 LIVGIDFTKSNEWTGAKSFNRKSLHHL--SNTPNPYEQAITIIGRTLAAFDEDNLIPCYGFGDASTHDQDVFSFYPEGRFCNGFEEVLARYREIVPQLKLAG 256          
BLAST of DY257917 vs. ExPASy Swiss-Prot
Match: CPNA2_CAEEL (Copine domain-containing protein 2 OS=Caenorhabditis elegans GN=cpna-2 PE=2 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 4.469e-17
Identity = 48/105 (45.71%), Postives = 62/105 (59.05%), Query Frame = 2
Query:  242 LIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQEN---DSPCQGFEHVLECYRKNVPNVQYFG 544
            LIFGID+T SN + G+ +F+   LHTI D   +NPYQ+VI I GK L  FD D  I  YGFGD+   D G+F+  E    +  C GFE VL  Y +  P ++  G
Sbjct: 7319 LIFGIDYTKSNFYQGERTFDKRPLHTI-DPAEMNPYQQVIQIVGKTLSSFDADGQIPAYGFGDEEFTDHGIFNIAERYDLEKDCNGFEEVLRVYNEVTPTIEMSG 7422          

HSP 2 Score: 50.447 bits (119), Expect = 7.282e-13
Identity = 20/39 (51.28%), Postives = 25/39 (64.10%), Query Frame = 1
Query:  907 HIHFRLVFVGVGDGPWGSIQKFHDKIPALQFDNFHLVNF 1023
            H    ++ VGVGDGPW  + +F D IP   FDNFH V+F
Sbjct: 7469 HYPLSIIMVGVGDGPWNMMGRFDDNIPKRLFDNFHFVDF 7507          

HSP 3 Score: 43.5134 bits (101), Expect = 7.282e-13
Identity = 23/58 (39.66%), Postives = 36/58 (62.07%), Query Frame = 3
Query:  750 GPTSYAPMVEAAVDIVEESGGPAHVLVIITSGQVATGSQQEQETIRSIVDASSYPLSI 923
            GPT++ P+++ A++I +E     H+LVI+  GQV      E+   ++I  AS YPLSI
Sbjct: 7422 GPTNFVPLIDRAIEICKEKHS-YHILVIVADGQVT----NEKINQKAIAAASHYPLSI 7474          
The following BLAST results are available for this feature:
BLAST of DY257917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RGLG2_ARATH1.403e-2052.94E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis t... [more]
RGLG1_ARATH1.389e-1850.00E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis t... [more]
CPNA2_CAEEL4.469e-1745.71Copine domain-containing protein 2 OS=Caenorhabdit... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB2AG04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257917 ID=DY257917; Name=DY257917; organism=Citrus clementina; type=EST; length=1153bp
GGCAGAGTAACGCGTCTAGTCCTGCCTGGGGAAAAGTTAAAGGGTTCTTG
CAGATCTAGCTGTCGCCGGTGCACAAATCCTCACAGTAATTATGGTTATT
CCCAGCAACAATTGGCCATTTGCAGCTGCCGGAACAAGTCGTCGACAATC
AAGTGTCGATTTTGCAGAACCACCAAGATTCGATGATGAGTTGCCGGAGG
CACCAGCAGGCGTGAGAGATCCTAGTAAAGTCCGATACAAACTGATTTTT
GGGATTGATTTCACTGCAAGCAATCTATGGGCTGGAAAATTCTCATTCGA
AAACGAAAGCCTTCACACCATTGTTGATGGTGACACCCTTAATCCATACC
AGGAAGTTATCTATATCACTGGAAAGGAGCTGGTTCTCTTTGACGGTGAC
TGTATTCGTTGTTATGGTTTTGGTGATGATACCACACGGGATGAGGGAGT
GTTTAGTTTTCAAGAGAATGATTCCCCATGTCAGGGGTTTGAACACGTCT
TGGAATGCTACAGAAAGAATGTTCCCAATGTGCAATATTTTGGTCAGCAT
TTTTCTCGTAACTCATCATGAAAACCAGATTTTCTTTTTTAAAAAGAAAA
AGAAATATGCATGCTGTAATAAGGAAATAAATGTGTGCTTGTTGATTAAA
TAAGCTTAATTATTTACTGCCTTTGGATATGACATAGAGTTGATATATAA
TGTTTTTCTAAAAAACACACACACACACACACATATGTGATTGTTTTAAG
GGCCAACCTCTTATGCGCCAATGGTTGAGGCTGCGGTAGACATTGTGGAA
GAGAGTGGAGGCCCTGCACATGTATTGGTTATCATCACTAGTGGACAGGT
TGCTACGGGGAGTCAACAGGAACAAGAAACAATAAGGTCTATTGTTGATG
CAAGTTCATATCCACTTTCGATTGGTCTTTGTTGGAGTCGGTGATGGACC
TTGGGGAAGCATCCAGAAATTTCATGACAAGATCCCTGCACTCCAATTTG
ACAATTTTCATTTGGTTAATTTTACGGGCCTCAGGTCAAAAACTACAACA
ACTGCCGAAAAAAGCCAAGGGATTTTGCTTCCCCTTCCCTAAAATGCCTC
CCCTGGGCAGCCGAAAGAAACTTTGGATAAAATAGAATTCTCAAAGAACG
AGG
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