DY257944

Overview
NameDY257944
Unique NameDY257944
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1307
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257944 vs. ExPASy Swiss-Prot
Match: DCAM_CATRO (S-adenosylmethionine decarboxylase proenzyme OS=Catharanthus roseus GN=SAMDC PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.074e-54
Identity = 82/97 (84.54%), Postives = 90/97 (92.78%), Query Frame = 2
Query:  521 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAI 811
            MALP SAIGFEGYEKRLE+SFFE   FADP G+GLR+L+K Q+DEIL+PAECTIV SLSN+YLDSYVLSESSLFVYPYK+IIKTCGTTKLLLSIPAI
Sbjct:    1 MALPASAIGFEGYEKRLEISFFESSFFADPDGKGLRALNKSQIDEILEPAECTIVDSLSNQYLDSYVLSESSLFVYPYKIIIKTCGTTKLLLSIPAI 97          

HSP 2 Score: 66.2402 bits (160), Expect = 2.074e-54
Identity = 39/102 (38.24%), Postives = 57/102 (55.88%), Query Frame = 3
Query:  867 GSFIFAGAQPFPHGSFSEEVAVLDGHFGQFGMDSTAFVMGIPDTQREGMFTPLLLSQGTL*TPVYTSKNVHELVWEKKKGHLFF*KN*EKASPGLLKDTKGI 1172
            GSFIF GAQ FPH SFSEEV +LD +FG+ G++S AF+MG PD  ++       +       P YT +     + +++K  +F+    E +S  L+    GI
Sbjct:  116 GSFIFPGAQSFPHRSFSEEVELLDNYFGKLGLESNAFIMGNPDQPQKWHVYSASVGSEQSSDPTYTLEMCMTGL-DREKASVFY--KSESSSAALMTTRSGI 214          
BLAST of DY257944 vs. ExPASy Swiss-Prot
Match: DCAM_NICSY (S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana sylvestris GN=SAMDC1 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 3.194e-52
Identity = 82/97 (84.54%), Postives = 90/97 (92.78%), Query Frame = 2
Query:  521 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAI 811
            MALPVSAIGFEG+EKRLE+SFFEPG+FADP G+GLRSLSK QLDEIL PAECTIV SLSN+ +DSYVLSESSLFVY YK+IIKTCGTTKLLL+IP I
Sbjct:    3 MALPVSAIGFEGFEKRLEISFFEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDSLSNDDVDSYVLSESSLFVYSYKIIIKTCGTTKLLLAIPPI 99          

HSP 2 Score: 62.003 bits (149), Expect = 3.194e-52
Identity = 29/43 (67.44%), Postives = 32/43 (74.42%), Query Frame = 3
Query:  867 GSFIFAGAQPFPHGSFSEEVAVLDGHFGQFGMDSTAFVMGIPD 995
            GSFIF GAQ FPH  FSEEVAVLDG+FG+    S A +MG PD
Sbjct:  118 GSFIFPGAQSFPHRHFSEEVAVLDGYFGKLAAGSKAVIMGSPD 160          
BLAST of DY257944 vs. ExPASy Swiss-Prot
Match: DCAM_SOLTU (S-adenosylmethionine decarboxylase proenzyme OS=Solanum tuberosum GN=SAMDC PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 5.428e-52
Identity = 80/98 (81.63%), Postives = 90/98 (91.84%), Query Frame = 2
Query:  518 KMALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAI 811
            +M LPVSAIGFEG+EKRLE+SF EPG+FADP G+GLRSLSK QLDEIL PAECTIV +LSN+Y+DSYVLSESSLFVY YK+IIKTCGTTKLLL+IP I
Sbjct:    2 EMDLPVSAIGFEGFEKRLEISFVEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDNLSNDYVDSYVLSESSLFVYSYKIIIKTCGTTKLLLAIPPI 99          

HSP 2 Score: 63.1586 bits (152), Expect = 5.428e-52
Identity = 37/69 (53.62%), Postives = 47/69 (68.12%), Query Frame = 3
Query:  867 GSFIFAGAQPFPHGSFSEEVAVLDGHFGQFGMDSTAFVMGIPD-TQREGMFTPLLLSQGTL*T--PVYT 1064
            GSFIF GAQ FPH  FSEEVAVLDG+FG+    S A +MG PD TQ+  +++    S G++ +  PVYT
Sbjct:  118 GSFIFPGAQSFPHRHFSEEVAVLDGYFGKLAAGSKAVIMGSPDKTQKWHVYS---ASAGSVQSNDPVYT 183          
BLAST of DY257944 vs. ExPASy Swiss-Prot
Match: DCAM_TOBAC (S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana tabacum GN=SAMDC PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.202e-51
Identity = 81/96 (84.38%), Postives = 89/96 (92.71%), Query Frame = 2
Query:  524 ALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAI 811
            ALPVSAIGFEG+EKRLE+SFFEPG+FADP G+GLRSLSK QLDEIL PAECTIV SLSN+ +DSYVLSESSLFVY YK+IIKTCGTTKLLL+IP I
Sbjct:    4 ALPVSAIGFEGFEKRLEISFFEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDSLSNDDVDSYVLSESSLFVYSYKIIIKTCGTTKLLLAIPPI 99          

HSP 2 Score: 62.003 bits (149), Expect = 1.202e-51
Identity = 29/43 (67.44%), Postives = 32/43 (74.42%), Query Frame = 3
Query:  867 GSFIFAGAQPFPHGSFSEEVAVLDGHFGQFGMDSTAFVMGIPD 995
            GSFIF GAQ FPH  FSEEVAVLDG+FG+    S A +MG PD
Sbjct:  118 GSFIFPGAQSFPHRHFSEEVAVLDGYFGKLAAGSKAVIMGSPD 160          
BLAST of DY257944 vs. ExPASy Swiss-Prot
Match: DCAM_SOLCI (S-adenosylmethionine decarboxylase proenzyme OS=Solanum chilense GN=SAMDC PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.202e-51
Identity = 79/97 (81.44%), Postives = 89/97 (91.75%), Query Frame = 2
Query:  521 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAI 811
            M LPVSAIGFEG+EKRLE+SF EPG+FADP G+GLRSL+K QLDEIL PAECTIV +LSN+Y+DSYVLSESSLFVY YK+IIKTCGTTKLLL+IP I
Sbjct:    1 MDLPVSAIGFEGFEKRLEISFVEPGLFADPNGKGLRSLTKAQLDEILGPAECTIVDNLSNDYVDSYVLSESSLFVYSYKIIIKTCGTTKLLLAIPPI 97          

HSP 2 Score: 63.5438 bits (153), Expect = 1.202e-51
Identity = 38/69 (55.07%), Postives = 46/69 (66.67%), Query Frame = 3
Query:  867 GSFIFAGAQPFPHGSFSEEVAVLDGHFGQFGMDSTAFVMGIPD-TQREGMFTPLLLSQGTL--*TPVYT 1064
            GSFIF GAQ FPH  FSEEVAVLDG+FG+    S A +MG PD TQ+  +++    S GT+    PVYT
Sbjct:  116 GSFIFPGAQSFPHRHFSEEVAVLDGYFGKLAAGSKAVIMGNPDKTQKWHVYS---ASAGTVQCNDPVYT 181          
BLAST of DY257944 vs. ExPASy Swiss-Prot
Match: DCAM_DATST (S-adenosylmethionine decarboxylase proenzyme OS=Datura stramonium GN=SAMDC PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.663e-51
Identity = 79/98 (80.61%), Postives = 90/98 (91.84%), Query Frame = 2
Query:  518 KMALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAI 811
            +M LPVSAIGFEG+EKRLE+SF EPG+F+DP G+GLRSLSK QLDEIL PAECTIV +LSN+Y+DSYVLSESSLFVY YK+IIKTCGTTKLLL+IP I
Sbjct:    2 EMDLPVSAIGFEGFEKRLEISFVEPGLFSDPNGKGLRSLSKAQLDEILGPAECTIVDNLSNDYVDSYVLSESSLFVYSYKIIIKTCGTTKLLLAIPPI 99          

HSP 2 Score: 62.003 bits (149), Expect = 2.663e-51
Identity = 37/69 (53.62%), Postives = 46/69 (66.67%), Query Frame = 3
Query:  867 GSFIFAGAQPFPHGSFSEEVAVLDGHFGQFGMDSTAFVMGIPD-TQREGMFTPLLLSQGTL*T--PVYT 1064
            GSFIF GAQ FPH  FSEEVAVLDG+FG+    S A +MG PD TQ+  +++    S G + +  PVYT
Sbjct:  118 GSFIFPGAQSFPHRHFSEEVAVLDGYFGKLAAGSKAVIMGNPDKTQKWHVYS---ASAGPVQSNDPVYT 183          
BLAST of DY257944 vs. ExPASy Swiss-Prot
Match: DCAM_IPOBA (S-adenosylmethionine decarboxylase proenzyme OS=Ipomoea batatas GN=SAMDC PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.349e-50
Identity = 80/97 (82.47%), Postives = 88/97 (90.72%), Query Frame = 2
Query:  521 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAI 811
            MAL  SAIGFEGYE RLE+SFFE G+F+DP GRGLR+LSK QLD++LKPAECTIVSSLSN  +DSYVLSESSLFVYPYK+IIKTCGTTKLLLSIP I
Sbjct:    1 MALSTSAIGFEGYENRLEISFFEAGIFSDPEGRGLRALSKEQLDKVLKPAECTIVSSLSNNEVDSYVLSESSLFVYPYKIIIKTCGTTKLLLSIPPI 97          

HSP 2 Score: 56.225 bits (134), Expect = 8.349e-50
Identity = 35/102 (34.31%), Postives = 52/102 (50.98%), Query Frame = 3
Query:  867 GSFIFAGAQPFPHGSFSEEVAVLDGHFGQFGMDSTAFVMGIPDTQREGMFTPLLLSQGTL*TPVYTSKNVHELVWEKKKGHLFF*KN*EKASPGLLKDTKGI 1172
            GSF F   QP+PH +FSEEVA+LD +FG+    S A+VMG    Q++               P+YT +     + +KK   +FF    + +S  ++ D  GI
Sbjct:  116 GSFNFPEVQPYPHRNFSEEVAILDSYFGKLSTGSKAYVMGGAGKQQQWHVYSASAESAENTFPIYTLEMCMTGL-DKKSASVFF--KTQSSSAAVMTDASGI 214          
BLAST of DY257944 vs. ExPASy Swiss-Prot
Match: DCAM_DAUCA (S-adenosylmethionine decarboxylase proenzyme OS=Daucus carota GN=SAMDC PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.094e-49
Identity = 77/97 (79.38%), Postives = 86/97 (88.66%), Query Frame = 2
Query:  521 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAI 811
            M+  VSAIGFEG+EKRLE+SFFEP  FADP G+GLR LSK+QLDE L PAECTIV+SLSNE++DSYVLSESSLFVY YK+IIKTCGTTKLL SIP I
Sbjct:    1 MSSEVSAIGFEGFEKRLEISFFEPSFFADPEGKGLRVLSKNQLDEFLGPAECTIVASLSNEHVDSYVLSESSLFVYAYKIIIKTCGTTKLLKSIPPI 97          

HSP 2 Score: 62.3882 bits (150), Expect = 4.094e-49
Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 3
Query:  867 GSFIFAGAQPFPHGSFSEEVAVLDGHFGQFGMDSTAFVMGIPDTQRE-GMFTPLLLSQGTL*TPVYT 1064
            G FIF GAQ +PH SFSEEV+VLD +FG+ G  S A++MG  D Q++  +++    S  TL  PVYT
Sbjct:  116 GCFIFPGAQSYPHRSFSEEVSVLDNYFGKLGSGSKAYIMGGSDKQQKWHVYSACAASTRTL-DPVYT 181          
BLAST of DY257944 vs. ExPASy Swiss-Prot
Match: DCAM1_DIACA (S-adenosylmethionine decarboxylase proenzyme 1 OS=Dianthus caryophyllus GN=SAMDC1 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 9.060e-49
Identity = 73/92 (79.35%), Postives = 83/92 (90.22%), Query Frame = 2
Query:  527 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSI 802
            + +SAIGFEG+EKRLE+SFFEPG+F DP G+GLR+LSK QLDEIL PAECTIV SL+NE +DSYVLSESSLFVY YK+IIKTCGTTKLL SI
Sbjct:   25 MALSAIGFEGFEKRLEISFFEPGIFVDPEGKGLRALSKAQLDEILGPAECTIVDSLANESVDSYVLSESSLFVYSYKIIIKTCGTTKLLHSI 116          

HSP 2 Score: 66.6254 bits (161), Expect = 9.060e-49
Identity = 44/102 (43.14%), Postives = 58/102 (56.86%), Query Frame = 3
Query:  867 GSFIFAGAQPFPHGSFSEEVAVLDGHFGQFGMDSTAFVMGIPDTQREGMFTPLLLSQGTL*TPVYTSKNVHELVWEKKKGHLFF*KN*EKASPGLLKDTKGI 1172
            GSFIF GAQ +PH SFSEEVAVLD +FG  G  S AFVMG P  + +        ++ +   PVYT +     + +K K  +FF    E AS  ++ +T GI
Sbjct:  138 GSFIFPGAQSYPHRSFSEEVAVLDKYFGNLGTGSKAFVMGSP-AKPQKWHVYSATAEPSYDDPVYTLEMCMTGL-DKGKASVFF--KSESASAAVMTETSGI 235          
BLAST of DY257944 vs. ExPASy Swiss-Prot
Match: DCAM_VICFA (S-adenosylmethionine decarboxylase proenzyme OS=Vicia faba GN=SAMDC PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.540e-48
Identity = 76/95 (80.00%), Postives = 87/95 (91.58%), Query Frame = 2
Query:  527 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAI 811
            + VSAIGFEG+EKRLE+SF +PG+F+DP GRGLRSL+K QLDEIL PAECTIVSSL+NE +DSYVLSESSLFVY YK+IIKTCGTTKLLL+IP I
Sbjct:    1 MAVSAIGFEGFEKRLEISFSDPGLFSDPQGRGLRSLTKSQLDEILAPAECTIVSSLANEDVDSYVLSESSLFVYAYKIIIKTCGTTKLLLAIPPI 95          

HSP 2 Score: 60.8474 bits (146), Expect = 1.540e-48
Identity = 29/43 (67.44%), Postives = 32/43 (74.42%), Query Frame = 3
Query:  867 GSFIFAGAQPFPHGSFSEEVAVLDGHFGQFGMDSTAFVMGIPD 995
            GSFIF GAQ FPH  FSEEVAVLDG FG+ G  S A++MG  D
Sbjct:  114 GSFIFPGAQSFPHRHFSEEVAVLDGFFGKLGSGSKAYIMGGSD 156          
The following BLAST results are available for this feature:
BLAST of DY257944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
DCAM_CATRO2.074e-5484.54S-adenosylmethionine decarboxylase proenzyme OS=Ca... [more]
DCAM_NICSY3.194e-5284.54S-adenosylmethionine decarboxylase proenzyme OS=Ni... [more]
DCAM_SOLTU5.428e-5281.63S-adenosylmethionine decarboxylase proenzyme OS=So... [more]
DCAM_TOBAC1.202e-5184.38S-adenosylmethionine decarboxylase proenzyme OS=Ni... [more]
DCAM_SOLCI1.202e-5181.44S-adenosylmethionine decarboxylase proenzyme OS=So... [more]
DCAM_DATST2.663e-5180.61S-adenosylmethionine decarboxylase proenzyme OS=Da... [more]
DCAM_IPOBA8.349e-5082.47S-adenosylmethionine decarboxylase proenzyme OS=Ip... [more]
DCAM_DAUCA4.094e-4979.38S-adenosylmethionine decarboxylase proenzyme OS=Da... [more]
DCAM1_DIACA9.060e-4979.35S-adenosylmethionine decarboxylase proenzyme 1 OS=... [more]
DCAM_VICFA1.540e-4880.00S-adenosylmethionine decarboxylase proenzyme OS=Vi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2BC02ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257944 ID=DY257944; Name=DY257944; organism=Citrus clementina; type=EST; length=1307bp
GCGGGGGAAAACGAAACGGACGGAAGGAAATCGAAATTCGTTTTGTGAAA
CAGAGTTAAAAATCAACCCTTCTTTAATCCTCAAGGAATTTTATTATTTT
CTTGGTCTCTGAATCGAGGGTTTTGCTTCTTGGTTTAGTGGGTTTGTTTT
CGTTATATTATCTGAGAAAGGCTGAATGATCTAATGGAGTCAAAAGGTGG
TAAGAAGAAGTCTAGCAGTAGTTCCTTATTCTACGAAGCTCCTCTTGGTT
ACAGCATTGAAGACGTTCGACCTCACGGTGGCATAAAGAAGTTCAGATCA
GCTGCTTACTCAAACTGCGTCCGCAAACCATCCTGAGATCGTCCAATTTG
TCCCATACCCCCCCAAAAAAAAGCTCACTACTACTGCAATTTTAATTTTT
TTTAGTTTTAGCCGTCTTAATACTGCAATTTACTTGGCCTATTTCTTTTT
CGACTTCCCTCGTTCTCTCGTTCTGCCCTCTTTGCTCTTTGCAATTGTCA
TTTGTTTTCTGTAAGGCAAGATGGCCTTGCCAGTCTCTGCAATTGGATTT
GAAGGTTATGAAAAGAGGCTTGAAGTTTCCTTTTTTGAGCCTGGTGTCTT
TGCTGATCCTGGAGGTAGGGGCCTCCGCTCTCTGTCAAAACATCAATTGG
ATGAAATACTGAAACCTGCGGAATGCACAATTGTTTCTTCGTTGTCAAAT
GAATATCTTGATTCATATGTCCTCTCAGAATCAAGCCTCTTTGTGTACCC
TTACAAAGTTATTATCAAAACTTGTGGGACTACCAAGCTGCTTCTTTCAA
TCCCTGCCATCCTCAAGTTATCTGAGTCCCTCTCGTTGTCTGTTCGATCT
GTGAGATACACTCGGCGGAAGCTTCATATTTGCTGGGGCTCAGCCATTTC
CACACGGTAGCTTCTCTGAGGAAGTAGCTGTCCTTGATGGACACTTTGGN
CAATTTGGTATGGACAGCACAGCTTTTGTCATGGGTATTCCTGACACACA
AAGAGAAGGCATGTTTACTCCGCTTCTGCTGAGCCAGGGAACCCTGTAAA
CCCCAGTTTACACTTCAAAAAATGTGCATGAATTGGTTTGGGAAAAAAAG
AAGGGGCATCTGTTCTTTTAAAAAAATTAAGAGAAAGCCTCACCCGGGTT
ATTGAAAGACACCAAAGGAATCCTTGGGGCATCCGAAAAAAAAAATCCTT
CCCCAAAAAAAACGGAAAAAAATTTTTTGGGAAAATTTTTTGAAGATTAT
TTTTCAAACCCCCCCTTTTTGGGGTGGTTTTTTACCCCCCCCCCCCAGAG
GAAAAAA
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