DY257955

Overview
NameDY257955
Unique NameDY257955
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length301
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig838 contig Ccv1_Contig838:262..562. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY257955 vs. ExPASy Swiss-Prot
Match: MDHG2_BRANA (Malate dehydrogenase 2, glyoxysomal OS=Brassica napus GN=MDH2 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.853e-11
Identity = 30/38 (78.95%), Postives = 35/38 (92.11%), Query Frame = 3 
Query:    3 AEEIF*LGPLNEYERIGLEKAKKELAGSIQKGISFSKK 116
            AEE+F LGPLNEYER+GLEKAK+ELAGSIQKG+ F +K
Sbjct:  321 AEEVFQLGPLNEYERVGLEKAKEELAGSIQKGVDFIRK 358
[Close]
BLAST of DY257955 vs. ExPASy Swiss-Prot
Match: MDHG1_BRANA (Malate dehydrogenase 1, glyoxysomal OS=Brassica napus GN=MDH1 PE=2 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.853e-11
Identity = 30/38 (78.95%), Postives = 35/38 (92.11%), Query Frame = 3 
Query:    3 AEEIF*LGPLNEYERIGLEKAKKELAGSIQKGISFSKK 116
            AEE+F LGPLNEYER+GLEKAK+ELAGSIQKG+ F +K
Sbjct:  321 AEEVFQLGPLNEYERVGLEKAKEELAGSIQKGVDFIRK 358
The following BLAST results are available for this feature:
BLAST of DY257955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
MDHG2_BRANA9.853e-1178.95Malate dehydrogenase 2, glyoxysomal OS=Brassica na... [more]
MDHG1_BRANA9.853e-1178.95Malate dehydrogenase 1, glyoxysomal OS=Brassica na... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB2BD12ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257955 ID=DY257955; Name=DY257955; organism=Citrus clementina; type=EST; length=301bp
GAGCTGAAGAAATCTTCTAACTTGGACCTTTAAATGAATATGAGAGGATT
GGCTTGGAGAAAGCGAAGAAAGAGTTAGCTGGAAGCATTCAAAAGGGCAT
CTCCTTCAGCAAGAAATGAAGCGATGCCAAGAAAAATTCCATCGGTTAAG
TTTATTATCGCTCTTGAGTCACCGTCTCCTGTAATTAGCAAGCCTTAATG
TTGTACCCAGAAACAGTCGGAAAATGTATTTTTCCAACAAGCGACGAATT
GGCATGTAAAGCAGTTTGAATGAGCTCATTTCGTTTCAGAGGAGCAAAAC
C
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