DY257956

Overview
NameDY257956
Unique NameDY257956
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1028
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257956 vs. ExPASy Swiss-Prot
Match: RS5_CICAR (40S ribosomal protein S5 (Fragment) OS=Cicer arietinum GN=RPS5 PE=2 SV=1)

HSP 1 Score: 353.599 bits (906), Expect = 1.078e-96
Identity = 177/197 (89.85%), Postives = 190/197 (96.45%), Query Frame = 2
Query:  215 DPSQPQYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 805
            DP+Q   +VKLFNRW+F+DVQ++D+SL DYIGV  +KHATYVPHTAGRYS KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI+KHAMEIIHLLTDQNPIQVIVDAV+NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARE+AFRN+K+IAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct:    3 DPTQ--IEVKLFNRWSFDDVQLSDVSLIDYIGVVPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKSIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 197          
BLAST of DY257956 vs. ExPASy Swiss-Prot
Match: RS52_ARATH (40S ribosomal protein S5-2 OS=Arabidopsis thaliana GN=RPS5B PE=1 SV=2)

HSP 1 Score: 352.443 bits (903), Expect = 2.402e-96
Identity = 177/207 (85.51%), Postives = 191/207 (92.27%), Query Frame = 2
Query:  185 MATAVVAQSQDPSQPQYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 805
            MATA    ++       +VKLFNRWT++DV V DISL DYIGVQAAKHAT+VPHTAGRYS KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLL+D NPIQVI+DA++NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+L+TTGARE+AFRN+KTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct:    1 MATAADVDAEIQQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207          
BLAST of DY257956 vs. ExPASy Swiss-Prot
Match: RS51_ARATH (40S ribosomal protein S5-1 OS=Arabidopsis thaliana GN=RPS5A PE=1 SV=1)

HSP 1 Score: 349.362 bits (895), Expect = 2.034e-95
Identity = 175/207 (84.54%), Postives = 190/207 (91.79%), Query Frame = 2
Query:  185 MATAVVAQSQDPSQPQYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 805
            MA +    ++   Q   +VKLFNRW+F+DV V DISL DYIGVQ +KHAT+VPHTAGRYS KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLL+D NPIQVI+DA++NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+LLTTGARE+AFRN+KTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct:    1 MAASAEIDAEIQQQLTNEVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207          
BLAST of DY257956 vs. ExPASy Swiss-Prot
Match: RS5_HUMAN (40S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=4)

HSP 1 Score: 317.005 bits (811), Expect = 1.119e-85
Identity = 158/205 (77.07%), Postives = 183/205 (89.27%), Query Frame = 2
Query:  191 TAVVAQSQDPSQPQYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 805
            TA  A ++ P     D+KLF +W+ +DVQ+NDISL DYI V+  K+A Y+PH+AGRY+AKRFRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+LL TGARE+AFRN+KTIAECLADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:    6 TAAPAVAETP-----DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204          
BLAST of DY257956 vs. ExPASy Swiss-Prot
Match: RS5_BOVIN (40S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=2 SV=3)

HSP 1 Score: 317.005 bits (811), Expect = 1.119e-85
Identity = 158/205 (77.07%), Postives = 183/205 (89.27%), Query Frame = 2
Query:  191 TAVVAQSQDPSQPQYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 805
            TA  A ++ P     D+KLF +W+ +DVQ+NDISL DYI V+  K+A Y+PH+AGRY+AKRFRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+LL TGARE+AFRN+KTIAECLADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:    6 TAAPAVAETP-----DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204          
BLAST of DY257956 vs. ExPASy Swiss-Prot
Match: RS5_MOUSE (40S ribosomal protein S5 OS=Mus musculus GN=Rps5 PE=2 SV=3)

HSP 1 Score: 314.309 bits (804), Expect = 7.250e-85
Identity = 153/190 (80.53%), Postives = 176/190 (92.63%), Query Frame = 2
Query:  236 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 805
            D+KLF +W+ +DVQ+NDISL DYI V+  K+A Y+PH+AGRY+AKRFRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+LL TGARE+AFRN+K IAECLADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:   16 DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKNIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204          
BLAST of DY257956 vs. ExPASy Swiss-Prot
Match: RS5_NEUCR (40S ribosomal protein S5 OS=Neurospora crassa GN=rps-5 PE=3 SV=2)

HSP 1 Score: 310.842 bits (795), Expect = 8.016e-84
Identity = 151/189 (79.89%), Postives = 175/189 (92.59%), Query Frame = 2
Query:  239 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 805
            VKLFNRW++EDV++ DISL+DYI +++     Y+PH+AGRY+AKRFRKA CPI+ERLTNSLMMHGRNNGKKLMAVRIV HA EIIHL+TDQNPIQ+ VDA++N GPRED+TRIGSAG VRRQAVD+SPLRRVNQAI LLTTGARE++FRNVK+IAECLA+ELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:   28 VKLFNRWSYEDVEIRDISLTDYIQIRSP---VYLPHSAGRYAAKRFRKANCPIIERLTNSLMMHGRNNGKKLMAVRIVAHAFEIIHLMTDQNPIQIAVDAIVNCGPREDSTRIGSAGTVRRQAVDVSPLRRVNQAIALLTTGAREASFRNVKSIAECLAEELINAAKGSSNSYAIKKKDELERVAKSNR 213          
BLAST of DY257956 vs. ExPASy Swiss-Prot
Match: RS5_RAT (40S ribosomal protein S5 OS=Rattus norvegicus GN=Rps5 PE=2 SV=3)

HSP 1 Score: 310.457 bits (794), Expect = 1.047e-83
Identity = 155/205 (75.61%), Postives = 180/205 (87.80%), Query Frame = 2
Query:  191 TAVVAQSQDPSQPQYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 805
            TA  A ++ P     D+KLF +W+ +DVQ+NDISL DYI V+  K+A Y+PH+AGRY+A  FRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+LL TGARE+AFRN+KTIAECLADELINA KGSSNSYAIKKKDE+ERVAK+NR
Sbjct:    6 TATPAVAETP-----DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAANGFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINARKGSSNSYAIKKKDELERVAKSNR 204          
BLAST of DY257956 vs. ExPASy Swiss-Prot
Match: RS5A_DROME (40S ribosomal protein S5a OS=Drosophila melanogaster GN=RpS5a PE=1 SV=1)

HSP 1 Score: 305.064 bits (780), Expect = 4.399e-82
Identity = 155/207 (74.88%), Postives = 180/207 (86.96%), Query Frame = 2
Query:  185 MATAVVAQSQDPSQPQYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 805
            + T VV+ ++ P     ++KLF RW+ +DV VNDISL DYI V+  K A Y+PH+AGRY+AKRFRKAQCPIVERLT SLMM GRNNGKKLMA RIVKH+ EIIHLLT +NP+Q++V A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+LL TGARE+AFRN+KTIAECLADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:   28 LETNVVSTTELP-----EIKLFGRWSCDDVTVNDISLQDYISVKE-KFARYLPHSAGRYAAKRFRKAQCPIVERLTCSLMMKGRNNGKKLMACRIVKHSFEIIHLLTGENPLQILVSAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 228          
BLAST of DY257956 vs. ExPASy Swiss-Prot
Match: RS5B_DROME (40S ribosomal protein S5b OS=Drosophila melanogaster GN=RpS5b PE=2 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 5.377e-80
Identity = 144/190 (75.79%), Postives = 171/190 (90.00%), Query Frame = 2
Query:  236 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 805
            ++KLF RW  +D+ ++DISL DYI V+  K A Y+PH+AGRY+AKRFRKAQCPIVERLT+ LMM GR+NGKKL+A RIVKHA EIIHLLT +NP+QV V+A++NSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+L+ TGARE+AFRN+KT+AECLADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:   42 EIKLFGRWACDDISISDISLQDYIAVKE-KFARYLPHSAGRYAAKRFRKAQCPIVERLTSGLMMKGRSNGKKLLACRIVKHAFEIIHLLTSENPLQVTVNAIVNSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLICTGAREAAFRNIKTVAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 230          
The following BLAST results are available for this feature:
BLAST of DY257956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RS5_CICAR1.078e-9689.8540S ribosomal protein S5 (Fragment) OS=Cicer ariet... [more]
RS52_ARATH2.402e-9685.5140S ribosomal protein S5-2 OS=Arabidopsis thaliana... [more]
RS51_ARATH2.034e-9584.5440S ribosomal protein S5-1 OS=Arabidopsis thaliana... [more]
RS5_HUMAN1.119e-8577.0740S ribosomal protein S5 OS=Homo sapiens GN=RPS5 P... [more]
RS5_BOVIN1.119e-8577.0740S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=... [more]
RS5_MOUSE7.250e-8580.5340S ribosomal protein S5 OS=Mus musculus GN=Rps5 P... [more]
RS5_NEUCR8.016e-8479.8940S ribosomal protein S5 OS=Neurospora crassa GN=r... [more]
RS5_RAT1.047e-8375.6140S ribosomal protein S5 OS=Rattus norvegicus GN=R... [more]
RS5A_DROME4.399e-8274.8840S ribosomal protein S5a OS=Drosophila melanogast... [more]
RS5B_DROME5.377e-8075.7940S ribosomal protein S5b OS=Drosophila melanogast... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2BE01ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257956 ID=DY257956; Name=DY257956; organism=Citrus clementina; type=EST; length=1028bp
GGTCTCCCAACACTCAGAAGAGAACTCAGCGAGCGGCTGCCGATTCTTAT
TATTCCTTTTTCAAACCCCTTCAGACAAACTAACGCACGCTTTCTTTTTC
TTCCGCTTTCTTCTCCATCGCTGATCATCTTGATTGCATTTTTAGTTCGA
AAAACATTGTCTTTTAATATTTTGTTGTGTAGGAATGGCGACTGCTGTAG
TGGCACAATCTCAAGACCCATCACAGCCTCAATACGATGTGAAGCTCTTC
AATAGGTGGACTTTTGAGGATGTTCAGGTCAATGACATCTCGTTGAGTGA
TTATATTGGCGTGCAAGCGGCCAAGCACGCTACTTATGTGCCTCACACTG
CTGGGAGGTACTCAGCTAAGCGCTTTCGGAAGGCCCAATGTCCCATTGTT
GAGAGGCTTACGAACTCTCTAATGATGCACGGTCGTAACAATGGCAAGAA
ATTGATGGCCGTCAGGATTGTTAAGCATGCCATGGAAATCATTCACCTTT
TGACTGACCAGAACCCAATTCAAGTCATTGTTGATGCTGTCATCAACAGT
GGTCCAAGGGAAGATGCTACCCGCATTGGATCTGCTGGCGTTGTTAGGCG
TCAGGCTGTTGATATTTCCCCATTGCGCCGTGTGAATCAAGCGATCTATT
TGCTCACCACTGGTGCTCGTGAATCCGCTTTCCGTAATGTCAAGACTATT
GCGGAATGTTTGGCCGATGAACTCATTAATGCTGCCAAGGGTTCATCTAA
CAGCTATGCCATCAAGAAGAAGGATGAGATCGAGCGAGTTGCTAAGGCCA
ATCGCTGAACTTTGGACAATGTTTTGTTTTTTATTTTTATTTTCTCAAAC
TTTGGACAATGTTTTGTCTCTATTTTTGGCGGATATTTATTATGATCATT
TATTACTTTAAAATAGATAAAGGTAAAAAGTTTATTGGGCNANNNNNAAN
GAANAAAAAAAAAAAAAAAAAAAGAAGAAAAAAAAAAGAAAAAGAAAAAA
AAAGGAGAAAGGGANAAGAAAGGGGTTT
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