DY257971

Overview
NameDY257971
Unique NameDY257971
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1167
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY257971_ssr21 microsatellite DY257971_ssr21:21..32. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9355 contig Ccv1_Contig9355:142..1308. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257971 vs. ExPASy Swiss-Prot
Match: R3HD2_MOUSE (R3H domain-containing protein 2 OS=Mus musculus GN=R3hdm2 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 8.852e-13
Identity = 67/241 (27.80%), Postives = 115/241 (47.72%), Query Frame = 3
Query:  252 FLVEALQ-NPRHRLTILRMELDIQRFLQNPDQQHFEFQHFP--TSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKIKIAIRRRPNAGCVNGANETGTKRSPVR---SVEERKEEYDRARARIFSGPSSPNSEDTLTQVSTDMKNIGFNRDEREIVRNSITDAEKIISIRDGAGLSRVAIFRDREKDRTDPDYD-RSYERYVKELSN*SG 953
            FLV  L+ NPR R+ +L++E +I  F+ + + Q   F+ FP  TSY R+  HRV+ ++G+     ++ ++  G  +++ KT+ ++ P  R SE      ++    E  +  I +R +A      N+        R   S+EER+EEY R R RIF+  +  N      ++S +  +   ++  R+I R +     +  S R  +  S +     R    TD D   RS    V + S+ SG
Sbjct:  157 FLVNTLKKNPRDRMMLLKLEQEILDFINDNNNQ---FKKFPQMTSYHRMLLHRVAAYFGM-----DHNVDQTGKAVIINKTSSTRIPEQRFSE----HIKDEKNTEFQQRFILKRDDASMDRDDNQMRVPLQDGRRSKSIEEREEEYQRVRERIFARETGQNGYLNDIRLSKEAFSSSSHK-RRQIFRGNREGLSRTSSSRQSSTDSELKSLEPRPWSSTDSDGSVRSMRPPVTKASSFSG 384          
BLAST of DY257971 vs. ExPASy Swiss-Prot
Match: ARP21_MOUSE (cAMP-regulated phosphoprotein 21 OS=Mus musculus GN=Arpp21 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.510e-12
Identity = 62/239 (25.94%), Postives = 120/239 (50.21%), Query Frame = 3
Query:  252 FLVEALQN-PRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTAESKYPAVRLSE-IPAKQSEESDK---LEKIKIAIRRRPNAGCVNGANETGTKRSPVRSVEERKEEYDRARARIFSGPSSPNSEDTL---TQVSTDMKNIGFNRDEREIVRNSITDAEKIISIRDGAGLSRVAIFRDREKDRTDPDYDRSYERYVKELSN 944
            FL+  L+N  R R+ +L+ME ++  F+ + +  + +F    +SY R+  HRV+ ++GL     ++ ++  G  +++ KT+ ++ P  R  E +  ++SEES K   L++   +I +  N   ++   +   +RS  +S+EER+EEY R R RIF+  S  + E      +++  DM        +R++ R          + RD +G +  +     E +   PD+ R++     + SN
Sbjct:  151 FLINTLKNNSRDRMILLKMEQEMIDFIADSNNHYKKFPQM-SSYQRMLVHRVAAYFGL-----DHNVDQTGKSVIINKTSSTRIPEQRFCEHLKDEKSEESQKRFILKRDNSSIDKEDNQNRMHPFRDD--RRS--KSIEEREEEYQRVRERIFAHDSVCSQESLFLDNSRLQEDMHICNETYKKRQLFR----------AHRDSSGRTSGSRQSSSETELRWPDHQRAWSSTDSDSSN 369          
BLAST of DY257971 vs. ExPASy Swiss-Prot
Match: R3HD1_HUMAN (R3H domain-containing protein 1 OS=Homo sapiens GN=R3HDM1 PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 1.972e-12
Identity = 57/187 (30.48%), Postives = 95/187 (50.80%), Query Frame = 3
Query:  252 FLVEALQN-PRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKI-KIAIRRRPNAGCVNGANETGTKRSPVR---SVEERKEEYDRARARIFSGPSSPNSEDTLTQVSTDMKNIGFNRDEREIVR 797
            FLV  L+N PR R+ +L++E +I  F+ N +    +F    TSY R+  HRV+ ++GL     ++ ++  G  ++V KT+ ++ P  + +E       + DK E   K  I +R N+      N+   +    R   S+EER+EEY RAR RIFS  S  + E+ +       ++    +  R+I R
Sbjct:  156 FLVNTLKNNPRDRMMLLKLEQEILDFIGNNESPRKKFPPM-TSYHRMLLHRVAAYFGL-----DHNVDQSGKSVIVNKTSNTRIPDQKFNE-----HIKDDKGEDFQKRYILKRDNSSFDKDDNQMRIRLKDDRRSKSIEEREEEYQRARDRIFSQDSLCSQENYIIDKRLQDEDASSTQQRRQIFR 331          
BLAST of DY257971 vs. ExPASy Swiss-Prot
Match: ARP21_HUMAN (cAMP-regulated phosphoprotein 21 OS=Homo sapiens GN=ARPP21 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 9.788e-12
Identity = 61/239 (25.52%), Postives = 112/239 (46.86%), Query Frame = 3
Query:  252 FLVEALQN-PRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTAESKYPAVRLSE-IPAKQSEESDKLEKIKIAIRRRPNAGCVNGANETGTKRSPVR------SVEERKEEYDRARARIFSGPSSPNSEDTLTQVSTDMKNIGFNRDEREIVRNSITDAEKIISIRDGAGLSRVAIFRDREKDRTDPDYDRSYERYVKELSN 944
            FL+  L+N  R R+ +L+ME +I  F+ + +  + +F    +SY R+  HRV+ ++GL     ++ ++  G  +++ KT+ ++ P  R  E +  ++ EES K       I +R N+      N+   +  P R      S+EER+EEY R R RIF+  S  + E    + S  +       ++  I   +    +     RDG+G +  +     E +    D+ R++     + SN
Sbjct:  152 FLINTLKNNSRDRMILLKMEQEIIDFIADNNNHYKKFPQM-SSYQRMLVHRVAAYFGL-----DHNVDQTGKSVIINKTSSTRIPEQRFCEHLKDEKGEESQKR-----FILKRDNSSIDKEDNQQN-RMHPFRDDRRSKSIEEREEEYQRVRERIFAHDSVCSQESLFVENSRLL-------EDSNICNETYKKRQLFRGNRDGSGRTSGSRQSSSENELKWSDHQRAWSSTDSDSSN 371          
BLAST of DY257971 vs. ExPASy Swiss-Prot
Match: R3HD2_BOVIN (R3H domain-containing protein 2 OS=Bos taurus GN=R3HDM2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.278e-11
Identity = 50/162 (30.86%), Postives = 85/162 (52.47%), Query Frame = 3
Query:  252 FLVEALQ-NPRHRLTILRMELDIQRFLQNPDQQHFEFQHFP--TSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKIKIAIRRRPNAGCVNGANETGTKRSPVR---SVEERKEEYDRARARIFSGPSSPN 719
            FLV  L+ NPR R+ +L++E +I  F+ + + Q   F+ FP  TSY R+  HRV+ ++G+     ++ ++  G  +++ KT+ ++ P  R SE      ++    E  +  I +R +A      N+        R   S+EER+EEY R R RIF+  +  N
Sbjct:  157 FLVNTLKKNPRDRMMLLKLEQEILDFINDNNNQ---FKKFPQMTSYHRMLLHRVAAYFGM-----DHNVDQTGKAVIINKTSNTRIPEQRFSE----HIKDEKNTEFQQRFILKRDDASMDRDDNQIRVPLQDGRRSKSIEEREEEYQRVRERIFARETGQN 306          
The following BLAST results are available for this feature:
BLAST of DY257971 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
R3HD2_MOUSE8.852e-1327.80R3H domain-containing protein 2 OS=Mus musculus GN... [more]
ARP21_MOUSE1.510e-1225.94cAMP-regulated phosphoprotein 21 OS=Mus musculus G... [more]
R3HD1_HUMAN1.972e-1230.48R3H domain-containing protein 1 OS=Homo sapiens GN... [more]
ARP21_HUMAN9.788e-1225.52cAMP-regulated phosphoprotein 21 OS=Homo sapiens G... [more]
R3HD2_BOVIN1.278e-1130.86R3H domain-containing protein 2 OS=Bos taurus GN=R... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAB2BF12ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257971 ID=DY257971; Name=DY257971; organism=Citrus clementina; type=EST; length=1167bp
GGCCCACAAGAAAGAAACCCTCTTCTTCTTCTTGATTTCTTCTATTTTTC
ATCCTGTCTGTGAAGCAAACAGAGAGGAAAACAAGAAAGAATTAGAAGAA
GAGGAGATACAACAGAGAGAAAGAGAAAGAAGAATTATAGTTAAGACTCT
TATCAAAGGTCAAAGCCCATCCCCCACCCCCAATGGACTCAGCATCGTCA
GCCACAGCTGCTGCTGCAATTTTTAATGAGAGAGAGTCAATGGTGGATCC
ATTTTTGGTTGAGGCTCTCCAGAATCCTCGTCATCGTCTCACCATTCTGC
GTATGGAACTTGATATTCAGAGGTTTTTGCAAAATCCTGATCAGCAGCAT
TTCGAGTTCCAACATTTTCCTACTTCTTATCTCCGACTGGCTGCACACCG
TGTTTCTCAACATTATGGGCTAGTAACTATGGTTCAGGAAAATGGCATAG
AAGGGCTGGGTAACAGGATTTTGGTGAGGAAAACAGCAGAAAGCAAATAT
CCTGCTGTCCGTTTATCTGAGATTCCTGCTAAGCAGTCGGAAGAAAGTGA
TAAGCTTGAAAAGATTAAAATTGCCATCAGGCGTAGGCCCAATGCTGGAT
GTGTTAATGGAGCAAATGAAACTGGGACGAAACGAAGTCCTGTTAGAAGT
GTGGAAGAGAGGAAGGAGGAGTATGATCGAGCACGTGCCCGCATCTTTAG
TGGTCCTAGCAGTCCTAACTCAGAGGATACGCTTACTCAGGTCTCTACAG
ATATGAAAAATATTGGCTTTAACCGAGATGAGAGGGAAATTGTCAGGAAC
TCCATTACTGATGCAGAAAAGATTATTAGTATCAGAGACGGTGCTGGTTT
GTCTCGAGTTGCCATTTTCAGAGACAGGGAGAAGGATCGTACTGATCCAG
ATTATGATCGGAGTTATGAAAGGTATGTCAAGGAGCTTTCCAACTAATCA
GGGGCTTAGCTTGGCCCCTTTTTATATGGCAGAAGGTTCAACTTCCCATT
TAGGCAGTAAGAAACTGGTTTTTCCCCCATTCAGTCCGATTCCAAGGGAC
TCAAGCTTCCCCTCAGTTTCCGGGCCTCCGTCCAGCCCCATTTTGGGACC
CCTTATTGGGGCGGGGGGGACCCAAATCCAAAACTTCGGGGGGGAGCCGG
GCATATTGGGGCATGGG
back to top