DY257975

Overview
NameDY257975
Unique NameDY257975
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length891
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9837 contig Ccv1_Contig9837:10..900. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257975 vs. ExPASy Swiss-Prot
Match: BRXL1_ORYSJ (Protein Brevis radix-like 1 OS=Oryza sativa subsp. japonica GN=BRXL1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.614e-16
Identity = 40/83 (48.19%), Postives = 56/83 (67.47%), Query Frame = 1
Query:  253 SQTEASHCEATTKNKNRTMKAEPA--QGDEWVEQDETGVYITLVALPGGLKDLKRVRFSRKKFTEKQAEQWWAANRARVYQQY 495
            S   +S  E   +++  ++    A  Q  EWVE+DE GVYIT+ ALPGG+++L+RVRFSR+KF+E  A  WW  NRAR++ QY
Sbjct:  314 SMRSSSSPEEVDRSRELSVSVSNASDQEREWVEEDEPGVYITIRALPGGIRELRRVRFSREKFSEMHARLWWEENRARIHDQY 396          

HSP 2 Score: 73.559 bits (179), Expect = 1.755e-12
Identity = 57/181 (31.49%), Postives = 85/181 (46.96%), Query Frame = 1
Query:   13 AAKDVIKSLTAQLKDMAEMLPVGAVRNSN--SFHSSPTPAWDVSSATIEQPSSPLTFQGAIPXXXXXXXXXXXXXFGDNRSPSQT---------EASHCEATTKNKNRTMKAEPAQGDEWVEQDETGVYITLVALPGGLKDLKRVRFSRKKFTEKQAEQWWAANRARVYQQYNVSMVDKSS 522
            + +  IK+LTAQ+KDMA +   GA R+    +  SS +PA   + A    P       G+                G + +PS +         E    E   +       +E  +  EWV Q E GV IT ++LP G  DLKR+RFSR+ F + QA++WWA N  +V + YNV   ++ +
Sbjct:   41 STRQAIKALTAQIKDMA-LKASGAYRHCKPCAGSSSSSPA---AGARRHHPYHAYADSGS----DRFHYAYRRAGSGGDATPSVSARTDFLAGDEEEEEEEEEEEGTTADGSEDDEAKEWVAQVEPGVLITFLSLPEGGNDLKRIRFSREIFNKWQAQRWWAENYEKVMELYNVQRFNQQT 213          
BLAST of DY257975 vs. ExPASy Swiss-Prot
Match: BRXL4_ARATH (Protein Brevis radix-like 4 OS=Arabidopsis thaliana GN=BRXL4 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.935e-15
Identity = 41/92 (44.57%), Postives = 59/92 (64.13%), Query Frame = 1
Query:  247 SPSQTEASHCEATTKN-------KNRTMKAEPAQG--DEWVEQDETGVYITLVALPGGLKDLKRVRFSRKKFTEKQAEQWWAANRARVYQQY 495
            S ++TE S  +A+ ++       ++  M    A    +EWVEQDE GVYIT+  LPGG ++L+RVRFSR++F E  A  WW  NRAR+++QY
Sbjct:  292 SVAKTETSSIDASIRSSSSRDADRSEEMSVSNASDVDNEWVEQDEPGVYITIKVLPGGKRELRRVRFSRERFGEMHARLWWEENRARIHEQY 383          

HSP 2 Score: 74.7146 bits (182), Expect = 7.880e-13
Identity = 38/88 (43.18%), Postives = 53/88 (60.23%), Query Frame = 1
Query:  277 EATTKNKNRTMKAEPA------QGDEWVEQDETGVYITLVALPGGLKDLKRVRFSRKKFTEKQAEQWWAANRARVYQQYNVSMVDKSS 522
            EAT K+ +   + +P       +  EWV Q E GV IT V+LPGG  DLKR+RFSR  F + QA++WWA N  +V + YNV  + + +
Sbjct:  126 EATPKSASGRNRVDPIVFVEEKEPKEWVAQVEPGVLITFVSLPGGGNDLKRIRFSRDMFNKLQAQRWWADNYDKVMELYNVQKLSRQA 213          
BLAST of DY257975 vs. ExPASy Swiss-Prot
Match: BRXL2_ARATH (Protein Brevis radix-like 2 OS=Arabidopsis thaliana GN=BRXL2 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.419e-15
Identity = 36/54 (66.67%), Postives = 42/54 (77.78%), Query Frame = 1
Query:  334 EWVEQDETGVYITLVALPGGLKDLKRVRFSRKKFTEKQAEQWWAANRARVYQQY 495
            EWVEQDE GVYIT+ ALP G ++L+RVRFSR+KF E  A  WW  NRAR+ QQY
Sbjct:  320 EWVEQDEAGVYITIRALPDGTRELRRVRFSREKFGETNARLWWEQNRARIQQQY 373          

HSP 2 Score: 75.0998 bits (183), Expect = 6.033e-13
Identity = 56/177 (31.64%), Postives = 82/177 (46.33%), Query Frame = 1
Query:   28 IKSLTAQLKDMAEMLPVGAVRNSNSFHSSPTPAWDVSSATIEQPSSPLTFQGAI---------PXXXXXXXXXXXXXFGDNRSPSQTEASHCEATTKNKNRTMKAEPAQGDEWVEQDETGVYITLVALPGGLKDLKRVRFSRKKFTEKQAEQWWAANRARVYQQYNVSMVDKSSVSI 531
            IKSLT+Q+KDMA +   GA ++      S     + S A  +  S+   F+ A          P             F       ++ +   E+T          E  +  EWV Q E GV IT V+LP G  D+KR+RFSR+ F + QA++WWA N  +V + YNV   ++ SV +
Sbjct:   40 IKSLTSQIKDMA-VKASGAYKSCKPCSGSSNQNKNRSYADSDVASNSGRFRYAYKRAGSGSSTPKILGKEMESRLKGFLSGEGTPESMSGRTESTV------FMEEEDELKEWVAQVEPGVLITFVSLPEGGNDMKRIRFSREMFDKWQAQKWWAENFDKVMELYNVQQFNQQSVPL 209          
BLAST of DY257975 vs. ExPASy Swiss-Prot
Match: BRXL3_ARATH (Protein Brevis radix-like 3 OS=Arabidopsis thaliana GN=BRXL3 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.875e-14
Identity = 40/89 (44.94%), Postives = 55/89 (61.80%), Query Frame = 1
Query:  247 SPSQTEASHCEATTKNKNRTMKAEPAQGD------EWVEQDETGVYITLVALPGGLKDLKRVRFSRKKFTEKQAEQWWAANRARVYQQY 495
            S ++TE S  + + ++ +     E +  +      EWVEQDE G+YIT+ ALP G ++L+RVRFSR KF E  A  WW  NRAR+ QQY
Sbjct:  281 SGTKTETSSTDGSARSSSVDRSEEVSVSNASDMESEWVEQDEPGIYITIRALPDGNRELRRVRFSRDKFGETHARLWWEQNRARIQQQY 369          
BLAST of DY257975 vs. ExPASy Swiss-Prot
Match: BRXL1_ARATH (Protein Brevis radix-like 1 OS=Arabidopsis thaliana GN=BRXL1 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 5.457e-14
Identity = 52/174 (29.89%), Postives = 85/174 (48.85%), Query Frame = 1
Query:   19 KDVIKSLTAQLKDMAEMLPVGAVRN-----SNSFHSSPTPAWDVSSATIEQPSSPLTFQGAIPXXXXXXXXXXXXXFGDNRSPSQTEASHCEATTKNKNRTMKAEPAQGDEWVEQDETGVYITLVALPGGLKDLKRVRFSRKKFTEKQAEQWWAANRARVYQQYNVSMVDKSSV 525
            K+ +KSLT Q+KDMA        ++     S+S +    P +D +S ++  P  P     + P               D+R  S         + ++ +  +  E  +  EW+ Q E GV+IT V+LP G  DLKR+RFSR+ F + QA++WW  N  R+ + YNV   ++ ++
Sbjct:   31 KEAVKSLTTQIKDMASKFSGSHKQSKPTPGSSSSNLRKFPDFDTASESVPYPY-PGGSTSSTPAWDLPRSSYHQSGRPDSRFTSMYGGERESISAQSCDVVL--EDDEPKEWMAQVEPGVHITFVSLPSGGNDLKRIRFSREVFDKWQAQRWWGENYDRIVELYNVQRFNRQAL 201          

HSP 2 Score: 74.3294 bits (181), Expect = 1.029e-12
Identity = 33/78 (42.31%), Postives = 50/78 (64.10%), Query Frame = 1
Query:  262 EASHCEATTKNKNRTMKAEPAQGDEWVEQDETGVYITLVALPGGLKDLKRVRFSRKKFTEKQAEQWWAANRARVYQQY 495
            +A+    +++++  +M        EWVE+DE GVYIT+  LP G ++L+RVRFSR++F E  A+ WW  NR R+  QY
Sbjct:  253 DAARITTSSRDEPPSMSNASEMQGEWVEEDEPGVYITIRQLPDGTRELRRVRFSRERFGEVHAKTWWEQNRDRIQTQY 330          
BLAST of DY257975 vs. ExPASy Swiss-Prot
Match: BRXL3_ORYSJ (Putative protein Brevis radix-like 3 OS=Oryza sativa subsp. japonica GN=BRXL3 PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 5.107e-12
Identity = 61/187 (32.62%), Postives = 75/187 (40.11%), Query Frame = 1
Query:   19 KDVIKSLTAQLKDMAEMLP--------VGAVRNSNSFHSS----PTPAWDVSSA---TIEQPSSPLTFQGAIPXXXXXXXXXXXXXFGDNRSPS----QTEASHCEATTK---------NKNRTMKAEPAQGDEWVEQDETGVYITLVALPGGLKDLKRVRFSRKKFTEKQAEQWWAANRARVYQQY 495
            +D +KSLT+QLKDM               A   S SF S     P P +   SA   T         +  A P             +   RS S    Q +A      T            +     E A   EW  Q E GV IT V LPGG  DLKR+RFSR++F E +A+ WW  NR R+  QY
Sbjct:   26 RDAVKSLTSQLKDMVLKFSGSNKHQHYKAATAGSPSFRSRSYRRPYPGFIDDSAFMTTTRPGGEAYMYTRAAPPPPVRAASTSMATWDMTRSKSNRGWQQDAGRSPGGTTWIQSIEEEAGADDVTVVEDAVPREWTAQVEPGVQITFVTLPGGGNDLKRIRFSRERFGEDRAKVWWEHNRDRIQAQY 212          
BLAST of DY257975 vs. ExPASy Swiss-Prot
Match: BRX_ARATH (Protein BREVIS RADIX OS=Arabidopsis thaliana GN=BRX PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.941e-11
Identity = 31/78 (39.74%), Postives = 48/78 (61.54%), Query Frame = 1
Query:  262 EASHCEATTKNKNRTMKAEPAQGDEWVEQDETGVYITLVALPGGLKDLKRVRFSRKKFTEKQAEQWWAANRARVYQQY 495
            +A+    ++++   +M        EW+E+DE GVYIT+  L  G ++L+RVRFSR++F E  A+ WW  NR R+  QY
Sbjct:  266 DAARTTTSSRDDPPSMSNASEMQAEWIEEDEPGVYITIRQLSDGTRELRRVRFSRERFGEVHAKTWWEQNRERIQTQY 343          
BLAST of DY257975 vs. ExPASy Swiss-Prot
Match: BRXL2_ORYSJ (Protein Brevis radix-like 2 OS=Oryza sativa subsp. japonica GN=BRXL2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.941e-11
Identity = 35/79 (44.30%), Postives = 49/79 (62.03%), Query Frame = 1
Query:  259 TEASHCEATTKNKNRTMKAEPAQGDEWVEQDETGVYITLVALPGGLKDLKRVRFSRKKFTEKQAEQWWAANRARVYQQY 495
            T +S  EA+    N    A   +  EWVEQDE GV IT+     G ++L+RVRFSR++F E++A+ WW  NR R++ QY
Sbjct:  336 TTSSRDEASVSISN----ASDLEATEWVEQDEPGVSITIREFGDGTRELRRVRFSRERFGEERAKVWWEQNRDRIHAQY 410          
BLAST of DY257975 vs. ExPASy Swiss-Prot
Match: BRXL4_ORYSJ (Protein Brevis radix-like 4 OS=Oryza sativa subsp. japonica GN=BRXL4 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.632e-11
Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = 1
Query:  313 AEPAQGD--EWVEQDETGVYITLVALPGGL-KDLKRVRFSRKKFTEKQAEQWWAANRARVYQQYNV 501
            A PA+G+  EWV Q E GV IT V+L GG   DLKR+RFSR+ + + QA++WW  N  R+ + YNV
Sbjct:   78 ARPAEGEAREWVAQVEPGVQITFVSLAGGGGNDLKRIRFSREMYDKWQAQKWWGENNERIMELYNV 143          
The following BLAST results are available for this feature:
BLAST of DY257975 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
BRXL1_ORYSJ7.614e-1648.19Protein Brevis radix-like 1 OS=Oryza sativa subsp.... [more]
BRXL4_ARATH4.935e-1544.57Protein Brevis radix-like 4 OS=Arabidopsis thalian... [more]
BRXL2_ARATH8.419e-1566.67Protein Brevis radix-like 2 OS=Arabidopsis thalian... [more]
BRXL3_ARATH1.875e-1444.94Protein Brevis radix-like 3 OS=Arabidopsis thalian... [more]
BRXL1_ARATH5.457e-1429.89Protein Brevis radix-like 1 OS=Arabidopsis thalian... [more]
BRXL3_ORYSJ5.107e-1232.62Putative protein Brevis radix-like 3 OS=Oryza sati... [more]
BRX_ARATH1.941e-1139.74Protein BREVIS RADIX OS=Arabidopsis thaliana GN=BR... [more]
BRXL2_ORYSJ1.941e-1144.30Protein Brevis radix-like 2 OS=Oryza sativa subsp.... [more]
BRXL4_ORYSJ9.632e-1151.52Protein Brevis radix-like 4 OS=Oryza sativa subsp.... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB2BG04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257975 ID=DY257975; Name=DY257975; organism=Citrus clementina; type=EST; length=891bp
GCAAAATGTAGAGCAGCAAAAGATGTGATTAAGTCTCTTACTGCCCAATT
GAAGGACATGGCTGAAATGTTACCTGTTGGAGCAGTGAGAAACAGCAATT
CTTTTCATTCTAGCCCGACTCCTGCTTGGGATGTTTCTTCTGCAACTATT
GAGCAACCTAGCAGTCCTTTGACTTTCCAGGGAGCAATTCCAAATGGATC
AAACAGCTTGATACTTTCTAATGGGTCAAACTTTGGTGATAATCGCTCGC
CAAGTCAAACTGAAGCGTCCCATTGTGAAGCAACAACAAAAAACAAAAAT
AGAACAATGAAAGCTGAACCTGCCCAGGGTGATGAATGGGTTGAACAAGA
TGAGACTGGTGTGTATATTACCCTTGTTGCTTTGCCTGGAGGCCTCAAAG
ATCTTAAGCGAGTCCGCTTCAGTCGAAAGAAATTCACCGAGAAACAAGCC
GAACAGTGGTGGGCAGCAAACAGAGCTAGAGTATATCAGCAATACAACGT
ATCCATGGTTGACAAATCTAGCGTAAGCATCGGCAGAGAAGGATTGGCTC
ATTGATCTGCCACATACAAGTTCTGCTGTTAGGAAAAAGTTCAGAAGCTA
GTGTTTTGGATTTTCTGCTTCTACGATTGAAGGAAAGCATCGATCTAATA
CTCCCAATTTTGCTTTTTCAGTGGGAGTGTGGTAATTCTTCCCTCAGTCC
CGGTTTATCTTTTAAATTTCTTGTAAATGTGTCCATTTTTTTCCTGAATT
TTCTTTTGATGGAAGTACGTATGACTTCTGTAAATTCTTTGTCAGTACGT
TCCTCCTATATATAAATCACTTCGTTGTAAATTCAGGACAGAGACTATTT
CTAAAGACTCCTCGTTATACACTGAAGTGAATCATCTTCCT
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