DY257979

Overview
NameDY257979
Unique NameDY257979
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length805
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY257979_ssr645 microsatellite DY257979_ssr645:645..656. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9841 contig Ccv1_Contig9841:4..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257979 vs. ExPASy Swiss-Prot
Match: TI10A_ARATH (Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10A PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.535e-25
Identity = 78/216 (36.11%), Postives = 112/216 (51.85%), Query Frame = 2
Query:  143 SGQKPSVAQTCNLLSQYFKENGRFANKGV-------------------QTLNLLPNLENSAEISRVQNVKASDFFANMPTFASNNS-------------VNEVRTEHGSSQMTIIYAGKVFVFNDISAEKAKEIMALATKASSSNAVVN-PELNNNSQTV--------------------------PIARRASLHRFFEKRKDRAIARAPYQVNCP 613
            +G+KPS +QTC+ LSQY KENG F +  +                    T++L P  E S   S VQ+VK ++ F   P+F+S++S                V+ E  ++ +TI YAG+V VFND SAEKAKE++ LA+K ++++   N  ++ +N  T+                          PIARRASLHRF EKRKDR  ++APYQ+  P
Sbjct:   17 TGKKPSFSQTCSRLSQYLKENGSFGDLSLGMACKPDVNGTLGNSRQPTTTMSLFP-CEASNMDSMVQDVKPTNLFPRQPSFSSSSSSLPKEDVLKMTQTTRSVKPESQTAPLTIFYAGQVIVFNDFSAEKAKEVINLASKGTANSLAKNQTDIRSNIATIANQVPHPRKTTTQEPIQSSPTPLTELPIARRASLHRFLEKRKDRVTSKAPYQLCDP 231          
BLAST of DY257979 vs. ExPASy Swiss-Prot
Match: TI10B_ARATH (Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10B PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.110e-21
Identity = 72/220 (32.73%), Postives = 101/220 (45.91%), Query Frame = 2
Query:  143 SGQKPSVAQTCNLLSQYFKENGRFANKGV---------------QTLNLLPNLENSAEISRVQ-NVKASDFFANMPTFASNNS-------------VNEVRTEHGSSQMTIIYAGKVFVFNDISAEKAKEIMALATKASSSN-AVVNPELNNNSQT-----------------------------------VPIARRASLHRFFEKRKDRAIARAPYQVN 607
            SG+KPS +QTC  LS+Y KE G F +  +                 +NL P   +  + S  Q ++K    F    +F+S++S                V+ E  S+ +TI Y G+V VF+D SAEKAKE++ LA K S+ +      E+NNN                                      +PIARRASLHRF EKRKDR  ++APYQ++
Sbjct:   12 SGRKPSFSQTCTRLSRYLKEKGSFGDLSLGMTCKPDVNGGSRQPTMMNLFPCEASGMDSSAGQEDIKPKTMFPRQSSFSSSSSSGTKEDVQMIKETTKSVKPESQSAPLTIFYGGRVMVFDDFSAEKAKEVIDLANKGSAKSFTCFTAEVNNNHSAYSQKEIASSPNPVCSPAKTAAQEPIQPNPASLACELPIARRASLHRFLEKRKDRITSKAPYQID 231          
BLAST of DY257979 vs. ExPASy Swiss-Prot
Match: TI11B_ARATH (Protein TIFY 11B OS=Arabidopsis thaliana GN=TIFY11B PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.649e-20
Identity = 81/213 (38.03%), Postives = 106/213 (49.77%), Query Frame = 2
Query:  140 SSGQKP---SVAQTCNLLSQYFKENGRFAN-------------------KGVQTLNLLPNLENSAE-----ISRVQNVKASDFFANMPTFASNNSVNEVRTEHGSSQMTIIYAGKVFVFNDISAEKAKEIMALATKAS-----SSNA----------VVNPELN------NNS--------QTVP-IARRASLHRFFEKRKDRAIARAPYQVN 607
            S+GQ P   + +Q C+LLS+Y KE G F N                   KG Q  N++  +E S       I +    +AS    +   +   +   +V  E G+SQ+TI + GKV VFN+   +KAKEIM +A +A+     S N+          VV P+LN      NN         Q V  IARRASLHRFF KRKDRA+ARAPYQVN
Sbjct:    2 STGQAPEKSNFSQRCSLLSRYLKEKGSFGNINMGLARKSDLELAGKFDLKGQQ--NVIKKVETSETRPFKLIQKFSIGEASTSTEDKAIYIDLSEPAKVAPESGNSQLTIFFGGKVMVFNEFPEDKAKEIMEVAKEANHVAVDSKNSQSHMNLDKSNVVIPDLNEPTSSGNNEDQETGQQHQVVERIARRASLHRFFAKRKDRAVARAPYQVN 212          
BLAST of DY257979 vs. ExPASy Swiss-Prot
Match: TI11A_ARATH (Protein TIFY 11A OS=Arabidopsis thaliana GN=TIFY11A PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.782e-19
Identity = 70/198 (35.35%), Postives = 95/198 (47.98%), Query Frame = 2
Query:  149 QKPSVAQTCNLLSQYFKENGRFAN-------KGVQTLNLLPNLENSAEISRVQNVKASDFFANMPTFASNNSVNEV----RTEHGSSQMTIIYAGKVFVFNDISAEKAKEIMALATKASSSNAV-----VNPELNNN--SQTVP---------------------------IARRASLHRFFEKRKDRAIARAPYQVN 607
            +K    + C+LLS+Y KE G F N       K   +L L    +   + + +     S      P+ +S   V +V     ++ GSSQ+TI + GKV V+N+   +KAKEIM +A +A     +     +N E NNN  S  +P                           IARRASLHRFF KRKDRA+ARAPYQVN
Sbjct:   14 EKSDFTRRCSLLSRYLKEKGSFGNIDLGLYRKPDSSLALPGKFDPPGKQNAMHKAGHSK---GEPSTSSGGKVKDVADLSESQPGSSQLTIFFGGKVLVYNEFPVDKAKEIMEVAKQAKPVTEINIQTPINDENNNNKSSMVLPDLNEPTDNNHLTKEQQQQQEQNQIVERIARRASLHRFFAKRKDRAVARAPYQVN 208          
The following BLAST results are available for this feature:
BLAST of DY257979 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TI10A_ARATH1.535e-2536.11Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10... [more]
TI10B_ARATH5.110e-2132.73Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10... [more]
TI11B_ARATH5.649e-2038.03Protein TIFY 11B OS=Arabidopsis thaliana GN=TIFY11... [more]
TI11A_ARATH4.782e-1935.35Protein TIFY 11A OS=Arabidopsis thaliana GN=TIFY11... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB2BH01ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257979 ID=DY257979; Name=DY257979; organism=Citrus clementina; type=EST; length=805bp
GAAGGCCACCACAGATTCTTCTCCATACGTATGAAGGCAGAATCAGATTT
TTCTTGTGCACTCAAAATTAATCAACAGAAACTTTCTCTGTCTTCTCAGT
TCTTACACAGGGCAGAACAAGCAACAGGCCATCATGTCGAGCTCAGGCCA
AAAACCCAGCGTTGCTCAGACTTGCAATCTTTTGAGTCAGTACTTTAAGG
AAAATGGAAGATTTGCAAATAAAGGTGTGCAAACACTGAACTTGCTGCCG
AACCTGGAAAATTCTGCGGAGATTTCAAGAGTACAGAATGTGAAAGCCAG
TGATTTCTTCGCAAATATGCCAACTTTTGCTTCCAACAATTCCGTAAATG
AAGTCAGAACGGAGCATGGAAGCTCTCAAATGACGATAATCTACGCAGGG
AAAGTGTTCGTCTTCAACGACATTTCTGCGGAGAAGGCAAAAGAAATCAT
GGCCTTAGCCACAAAAGCATCGAGCTCTAATGCCGTTGTTAACCCGGAAT
TGAACAACAACTCTCAGACGGTGCCAATAGCAAGAAGAGCTTCACTTCAC
CGTTTCTTTGAGAAAAGAAAAGACAGGGCTATAGCAAGAGCTCCGTACCA
AGTGAATTGTCCTTATTCATCAGTGGCTCCTGCTGCTGCCGCTGCTCCTC
CTCCTCCAAAGCCAAAAGATCAAAGCAAGTACTCATGGCTGCACCTTGAA
GGCCAATCGTCATCAAAACAGCTTGATCTCAACTTGTAGTGTGATGGGTT
CGCCATCTTATTCAACTACTGCCATATATAGGCTTTATTAACTGAAATTT
CGACC
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