DY258006

Overview
NameDY258006
Unique NameDY258006
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length599
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2788 contig Ccv1_Contig2788:666..1264. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: MTDH_FRAAN (Probable mannitol dehydrogenase OS=Fragaria ananassa GN=CAD PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 3.498e-54
Identity = 104/130 (80.00%), Postives = 116/130 (89.23%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTL 390
            GADSFL SRD DQ+Q A+GT+DGIIDTVSA HP+LPL+GLL S GKLV+VGAP+KPLELPV  L+MGRK V+GS  GGMKETQEMIDFAA+HNITADIEVI +DY+NTAMERL KADVRYRFVIDI NTL
Sbjct:  226 GADSFLVSRDQDQMQAAIGTMDGIIDTVSAQHPLLPLIGLLNSHGKLVMVGAPEKPLELPVFPLLMGRKMVAGSGIGGMKETQEMIDFAARHNITADIEVIPIDYLNTAMERLVKADVRYRFVIDIGNTL 355          
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: MTDH_MESCR (Probable mannitol dehydrogenase OS=Mesembryanthemum crystallinum GN=ELI3 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.018e-53
Identity = 101/132 (76.52%), Postives = 117/132 (88.64%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTLYA 396
            GADSF+ SR+P+Q+Q AMGTLDGIIDTVSA HP+LPL+GLLKSQGK+++VG PDKPLELPV  L+ GRK ++GS  GGMKETQEMIDFAAKH+I +DIEV+ MDYVNTAMERL K DVRYRFVID+ANTL A
Sbjct:  229 GADSFVVSREPEQMQSAMGTLDGIIDTVSAAHPLLPLLGLLKSQGKMIMVGVPDKPLELPVFPLLQGRKILAGSCIGGMKETQEMIDFAAKHDIKSDIEVVPMDYVNTAMERLLKGDVRYRFVIDVANTLKA 360          
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: CADH7_ARATH (Cinnamyl alcohol dehydrogenase 7 OS=Arabidopsis thaliana GN=CAD7 PE=1 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 5.584e-52
Identity = 100/133 (75.19%), Postives = 116/133 (87.22%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTLYAT 399
            GAD+FL SRDP Q++ AMGT+DGIIDTVSA HP+LPL+GLLK++GKLV+VGAP +PLELPV  LI GRK V GS  GG+KETQEM+D A KHNITADIE+IS DYVNTAMERLAKADV+YRFVID+ANT+  T
Sbjct:  224 GADAFLVSRDPKQMKDAMGTMDGIIDTVSATHPLLPLLGLLKNKGKLVMVGAPAEPLELPVFPLIFGRKMVVGSMVGGIKETQEMVDLAGKHNITADIELISADYVNTAMERLAKADVKYRFVIDVANTMKPT 356          
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: MTDH_PETCR (Mannitol dehydrogenase (Fragment) OS=Petroselinum crispum GN=ELI3 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 3.619e-51
Identity = 96/130 (73.85%), Postives = 115/130 (88.46%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTL 390
            GAD FL S D DQ+Q A GTL GIIDTVSA+HP++PL+GLLK  GKLV+VGAP+KPLELPV  L+MGRK ++GS+ GG+KETQEM+DFAA+HNITAD+EVI +DYVNTAMERL K+DVRYRFVID+ANT+
Sbjct:  205 GADEFLVSSDSDQMQAATGTLHGIIDTVSALHPVVPLLGLLKVNGKLVMVGAPEKPLELPVFPLLMGRKVLAGSNIGGLKETQEMLDFAAQHNITADVEVIPVDYVNTAMERLVKSDVRYRFVIDVANTI 334          
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: CADH8_ARATH (Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis thaliana GN=CAD8 PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 8.063e-51
Identity = 100/130 (76.92%), Postives = 113/130 (86.92%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTL 390
            GAD+FL SRDP Q++ AMGT+DGIIDTVSA H +LPL+GLLK +GKLV+VGAP+KPLELPV+ LI  RK V GS  GG+KETQEMID A KHNITADIE+IS DYVNTAMERL KADVRYRFVID+ANTL
Sbjct:  224 GADAFLVSRDPKQIKDAMGTMDGIIDTVSATHSLLPLLGLLKHKGKLVMVGAPEKPLELPVMPLIFERKMVMGSMIGGIKETQEMIDMAGKHNITADIELISADYVNTAMERLEKADVRYRFVIDVANTL 353          
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: CADH6_ARATH (Probable cinnamyl alcohol dehydrogenase 6 OS=Arabidopsis thaliana GN=CAD6 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 5.779e-49
Identity = 95/134 (70.90%), Postives = 114/134 (85.07%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTLYATK 402
            GAD FL S D DQ++ AMGT+DGIIDTVSA H I PL+GLLKS GKLVL+GA +KP ++   SLI+GRK+++GS  GGM+ETQEMIDFAA+H I A+IE+ISMDYVNTAM+RLAK DVRYRFVIDI+NTL AT+
Sbjct:  229 GADGFLVSTDEDQMKAAMGTMDGIIDTVSASHSISPLIGLLKSNGKLVLLGATEKPFDISAFSLILGRKSIAGSGIGGMQETQEMIDFAAEHGIKAEIEIISMDYVNTAMDRLAKGDVRYRFVIDISNTLAATR 362          
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: MTDH3_STYHU (Probable mannitol dehydrogenase 3 OS=Stylosanthes humilis GN=CAD3 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 8.344e-48
Identity = 94/133 (70.68%), Postives = 110/133 (82.71%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTLYAT 399
            GADSFL SRDPDQ++    TLDGIIDTVSA H I+PL+GLLKS GKLVL+GA +KPLELP   LI+GRK V G+  GG+KETQEMIDF+ KHN+  +IEV+ MDYVN AM+RLAKADV+YRFVID+ANTL  T
Sbjct:  230 GADSFLVSRDPDQMEAPKETLDGIIDTVSADHSIVPLIGLLKSHGKLVLIGAIEKPLELPPFPLILGRKLVGGTLVGGLKETQEMIDFSPKHNVKPEIEVVPMDYVNIAMQRLAKADVKYRFVIDVANTLKPT 362          
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: MTDH_APIGR (Mannitol dehydrogenase OS=Apium graveolens GN=MTD PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.859e-47
Identity = 92/130 (70.77%), Postives = 108/130 (83.08%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTL 390
            GADSFL + D +Q++GA  +LDGIIDTV   HP+ PL  LLK  GKLV+VGAP+KP ELPV SL+ GRK + G+  GG+KETQEM+DFAAKHNITAD+EVI MDYVNTAMERL K+DVRYRFVIDIANT+
Sbjct:  228 GADSFLLNSDQEQMKGARSSLDGIIDTVPVNHPLAPLFDLLKPNGKLVMVGAPEKPFELPVFSLLKGRKLLGGTINGGIKETQEMLDFAAKHNITADVEVIPMDYVNTAMERLVKSDVRYRFVIDIANTM 357          
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: CADH9_ARATH (Probable cinnamyl alcohol dehydrogenase 9 OS=Arabidopsis thaliana GN=CAD9 PE=1 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 3.171e-47
Identity = 89/130 (68.46%), Postives = 110/130 (84.62%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTL 390
            GADSFL + DP +++ A+GT+D IIDT+SAVH + PL+GLLK  GKL+ +G P+KPLELP+  L++GRK V GS  GGMKETQEM+DF AKHNITADIE+I MD +NTAMERLAK+DVRYRFVID+AN+L
Sbjct:  228 GADSFLVTTDPQKMKAAIGTMDYIIDTISAVHALYPLLGLLKVNGKLIALGLPEKPLELPMFPLVLGRKMVGGSDVGGMKETQEMLDFCAKHNITADIELIKMDEINTAMERLAKSDVRYRFVIDVANSL 357          
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: GEDH1_OCIBA (Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GEDH1 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 5.409e-47
Identity = 88/130 (67.69%), Postives = 109/130 (83.85%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTL 390
            G D F+ S DP Q+Q A+GTLDGIIDTVSA HPI+PL+ LLK  GKL++VG PDKPL+LPV  LI GR+T++GS  GG+KETQEMIDFAAK+NI AD+EVI +DY+NTAM+RL K+DV+YRFVID+  +L
Sbjct:  228 GVDEFVVSTDPQQMQAAVGTLDGIIDTVSAPHPIVPLLSLLKPHGKLIVVGLPDKPLQLPVFPLIQGRRTIAGSGIGGLKETQEMIDFAAKNNIVADVEVIPIDYINTAMDRLLKSDVKYRFVIDVEKSL 357          
The following BLAST results are available for this feature:
BLAST of DY258006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
MTDH_FRAAN3.498e-5480.00Probable mannitol dehydrogenase OS=Fragaria ananas... [more]
MTDH_MESCR1.018e-5376.52Probable mannitol dehydrogenase OS=Mesembryanthemu... [more]
CADH7_ARATH5.584e-5275.19Cinnamyl alcohol dehydrogenase 7 OS=Arabidopsis th... [more]
MTDH_PETCR3.619e-5173.85Mannitol dehydrogenase (Fragment) OS=Petroselinum ... [more]
CADH8_ARATH8.063e-5176.92Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis th... [more]
CADH6_ARATH5.779e-4970.90Probable cinnamyl alcohol dehydrogenase 6 OS=Arabi... [more]
MTDH3_STYHU8.344e-4870.68Probable mannitol dehydrogenase 3 OS=Stylosanthes ... [more]
MTDH_APIGR1.859e-4770.77Mannitol dehydrogenase OS=Apium graveolens GN=MTD ... [more]
CADH9_ARATH3.171e-4768.46Probable cinnamyl alcohol dehydrogenase 9 OS=Arabi... [more]
GEDH1_OCIBA5.409e-4767.69Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2CD04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258006 ID=DY258006; Name=DY258006; organism=Citrus clementina; type=EST; length=599bp
GGCGCTGATTCATTTTTGAATAGCCGTGACCCTGACCAATTGCAGGGTGC
TATGGGCACATTGGATGGTATTATTGACACGGTGTCCGCTGTGCACCCCA
TTTTGCCATTGGTCGGTCTATTAAAGTCCCAGGGCAAGCTTGTTCTGGTT
GGTGCTCCGGACAAGCCACTCGAGCTACCTGTGATTTCCTTAATTATGGG
GAGGAAGACGGTGTCAGGGAGCAGCACTGGGGGAATGAAAGAGACGCAAG
AGATGATTGATTTTGCAGCAAAACACAATATAACAGCTGACATTGAGGTT
ATTTCGATGGATTATGTCAATACGGCAATGGAGAGGCTTGCCAAGGCTGA
TGTTCGGTATCGATTTGTCATTGATATTGCAAACACCTTGTACGCCACCA
AACCTTGAAGAATCAAAATCAGATTGATGTCTTCAATTCACAACCTTGTT
CCATGATCCACTTTGCTATATGTAATGCTCCCTCGATCATTACACTCTTT
TAGCGCTTAAATTACTTTTAATTTCCAGTTACATCGACCCTAATTATGTC
GTGATTGCCGAAAAACTATAAATGTTAATGAAATAAAACATTGTTCATA
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