DY258013

Overview
NameDY258013
Unique NameDY258013
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9507 contig Ccv1_Contig9507:551..1082. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258013 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.502e-36
Identity = 64/100 (64.00%), Postives = 80/100 (80.00%), Query Frame = 1
Query:   52 ATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 351
            ATD VLSFK+A+WFWMT Q PKPSCH+V+T  W+PSA D  AGRLPGYG+ TN++NGG+ECG+G N  V +R+GFF  +CG  G+  G NLDCY+Q+PFG
Sbjct:  144 ATDRVLSFKTALWFWMTPQAPKPSCHDVLTGRWQPSAADTAAGRLPGYGVLTNLLNGGLECGKGPNPQVADRLGFFRRYCGLLGVGTGNNLDCYNQRPFG 243          
BLAST of DY258013 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 3.347e-36
Identity = 68/108 (62.96%), Postives = 82/108 (75.93%), Query Frame = 1
Query:   52 ATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLILMARSM 375
            ATDPV+SFK+A+WFWMT Q PKPSCH+VIT  W PS+ D  AGRLPGYG  TNIINGG+ECG+G +  V++RIGF+  +C  FGI  G NLDCY Q+PFG  L   S+
Sbjct:  209 ATDPVISFKTALWFWMTPQSPKPSCHDVITGGWTPSSADRAAGRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFYKRYCDIFGIGYGDNLDCYSQRPFGSSLPLSSI 316          
BLAST of DY258013 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 5.709e-36
Identity = 66/105 (62.86%), Postives = 81/105 (77.14%), Query Frame = 1
Query:   52 ATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLILMA 366
            A+DPV+SFK+A+WFWMT Q PKPSCH+VIT +W PS+ D+ AGR+PGYG+ TNIINGG+ECG G +D V NRIGF+  +C   GI  G NLDCY Q+PF   L A
Sbjct:  228 ASDPVVSFKTALWFWMTPQSPKPSCHDVITGQWTPSSGDIAAGRVPGYGVITNIINGGLECGFGPDDRVANRIGFYQRYCDVLGIGYGSNLDCYDQRPFNSGLTA 332          
BLAST of DY258013 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 7.456e-36
Identity = 67/104 (64.42%), Postives = 79/104 (75.96%), Query Frame = 1
Query:   55 TDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGW-NDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLILM 363
            TDP ++FK+A+WFWMT Q PKPSCH VIT+ W PSA D  AGR+PGYG+ TNIINGGIECGQG  N+A  NRIGF+ T+C   G   G NLDCY Q+PFG  L+
Sbjct:  194 TDPFIAFKTALWFWMTPQSPKPSCHAVITESWTPSAADSEAGRVPGYGVITNIINGGIECGQGGPNNANENRIGFYKTYCDSLGTTYGSNLDCYQQRPFGYGLL 297          
BLAST of DY258013 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 9.738e-36
Identity = 62/100 (62.00%), Postives = 76/100 (76.00%), Query Frame = 1
Query:   52 ATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 351
            ++DP +SFKSA WFWMT Q PKPSCH VI   W PS++D  AGR+PGYG+ TNIINGG+ECG+GWN  V +RIGF+  +C   G+  G NLDCY+Q PFG
Sbjct:  217 SSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRVPGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFG 316          
BLAST of DY258013 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.833e-35
Identity = 62/99 (62.63%), Postives = 75/99 (75.76%), Query Frame = 1
Query:   52 ATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 348
            ATDP +SFKSA WFWMT Q PKPSCH+VI   W PS +D  AGR+PG+GL TNIINGG+ECGQGWN  V +RIGF+  +C   G+  G NLDCY+Q+ +
Sbjct:  214 ATDPTISFKSAFWFWMTPQSPKPSCHDVIIGAWSPSGSDQAAGRVPGFGLITNIINGGLECGQGWNAKVEDRIGFYKRYCDTLGVGYGNNLDCYNQRSY 312          
BLAST of DY258013 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 147.517 bits (371), Expect = 3.700e-35
Identity = 63/99 (63.64%), Postives = 78/99 (78.79%), Query Frame = 1
Query:   52 ATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 348
            A D V++FK+AIWFWMTAQPPKPSCH VI  +W+PS  D  AGRLPGYG+ TNIINGG+ECG+G +  V +RIGF+  +C  FG+ PG NLDCY+Q+ F
Sbjct:  228 ANDAVIAFKAAIWFWMTAQPPKPSCHAVIAGQWQPSDADRAAGRLPGYGVITNIINGGLECGRGQDGRVADRIGFYQRYCNIFGVNPGGNLDCYNQRSF 326          
BLAST of DY258013 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 4.833e-35
Identity = 63/100 (63.00%), Postives = 78/100 (78.00%), Query Frame = 1
Query:   52 ATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 351
            ATDPV+SFKSAIWFWMT Q PKPSCH+VIT  W+PS  D  A R+PG+G+ TNIINGG+ECG G +  V++RIGF+  +CG  G+ PG NLDC +Q+ FG
Sbjct:  215 ATDPVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGENLDCGNQRSFG 314          
BLAST of DY258013 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 6.312e-35
Identity = 67/111 (60.36%), Postives = 81/111 (72.97%), Query Frame = 1
Query:   52 ATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLILMARSM*SS 384
            ATD V+SFKSA+WFWMTAQ PKPS H+VIT  W PS+ DV A RLPGYG  TNIINGG+ECG+G +  V++RIGFF  +C   G+  G NLDCY Q PFG  L+   + +S
Sbjct:  217 ATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSLLLSDLVTS 327          
BLAST of DY258013 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 8.243e-35
Identity = 64/108 (59.26%), Postives = 82/108 (75.93%), Query Frame = 1
Query:   52 ATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLILMARSM 375
            ATDPV+SFKSA+WFWMT Q PKPSCH+VI   W+PSA D  A RLPG+G+ TNIINGG+ECG+G +  V++RIGF+  +C   G+ PG NLDC +Q+ FG  L+  +M
Sbjct:  222 ATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSAGDRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 329          
The following BLAST results are available for this feature:
BLAST of DY258013 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CHIT_CARPA1.502e-3664.00Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI2_PEA3.347e-3662.96Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHI9_ORYSJ5.709e-3662.86Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_POPTR7.456e-3664.42Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHI1_GOSHI9.738e-3662.00Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI1_THECC2.833e-3562.63Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHIB_ARATH3.700e-3563.64Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHIC_SOLLC4.833e-3563.00Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHIT_PHAVU6.312e-3560.36Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI1_TOBAC8.243e-3559.26Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2CE06ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258013 ID=DY258013; Name=DY258013; organism=Citrus clementina; type=EST; length=532bp
GGAGAAGACCTAGGGCTTGGAGAGGAGTTGTTGAACAATCCAGACCTTCT
TGCTACTGATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGA
CCGCACAGCCACCAAAGCCATCATGCCACGAAGTCATTACCGACGAATGG
AAACCATCAGCAAATGACGTAAACGCCGGCCGGCTTCCGGGATACGGTCT
AACCACAAATATAATCAACGGTGGAATTGAATGTGGCCAAGGTTGGAATG
ACGCTGTACGTAACCGTATTGGGTTCTTTAGCACTTTCTGTGGCAAGTTT
GGGATTCAGCCTGGTTACAATCTTGATTGCTACCACCAACAGCCTTTTGG
CCTTATTCTGATGGCACGATCTATGTGATCATCATGATCAACGTTTTAGT
AAAATAAGCTTAATAAAAGCTACTTAATAAAAACTTTAGATGTCACACTT
GTAGGTGGACAACTAAGTTGTTACGCTCTTATTGTAAATAAATTAAATAA
GACTGATCCAACATGGATCAATGAGTCTTCTC
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