DY258044

Overview
NameDY258044
Unique NameDY258044
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1017
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258044_ssr252 microsatellite DY258044_ssr252:252..266. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY258044 vs. ExPASy Swiss-Prot
Match: MYB21_ARATH (Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 6.561e-22
Identity = 43/64 (67.19%), Postives = 55/64 (85.94%), Query Frame = 2
Query:    2 PDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANST 193
            PDV+RGN+TP+EQ+ I+ELH+KWGNRWSKIA+HLPGRTDNEIKN+WRTR+QK  +   +   S+
Sbjct:   71 PDVRRGNITPEEQLIIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKYIKQSDVTTTSS 134          
BLAST of DY258044 vs. ExPASy Swiss-Prot
Match: MYB05_ANTMA (Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 3.256e-21
Identity = 46/66 (69.70%), Postives = 56/66 (84.85%), Query Frame = 2
Query:    2 PDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANSTTF 199
            PDV+RGN+TP+EQ+ I+ELH+KWGNRWSKIA+ LPGRTDNEIKNYWRTR+QK        ++STTF
Sbjct:   64 PDVRRGNITPEEQLLIMELHAKWGNRWSKIAKTLPGRTDNEIKNYWRTRIQKHMEQ-GDQSSSTTF 128          
BLAST of DY258044 vs. ExPASy Swiss-Prot
Match: MYB40_ANTMA (Myb-related protein 340 OS=Antirrhinum majus GN=MYB340 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.237e-20
Identity = 43/56 (76.79%), Postives = 52/56 (92.86%), Query Frame = 2
Query:    2 PDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYW-RTRVQKQAR 166
            PDV+RGN+TP+EQ+ I+ELH+KWGNRWSKIA+HLPGRTDNEIKNYW RTR+QK  +
Sbjct:   64 PDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWNRTRIQKHIK 119          
BLAST of DY258044 vs. ExPASy Swiss-Prot
Match: MYB48_ARATH (Transcription factor MYB48 OS=Arabidopsis thaliana GN=MYB48 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.981e-19
Identity = 41/65 (63.08%), Postives = 53/65 (81.54%), Query Frame = 2
Query:    2 PDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANSTT 196
            P +KRG +TPQE+  +LELH+KWGNRWSKIA+ LPGRTDNEIKNYWRT ++K+A+  K   + T+
Sbjct:   58 PGLKRGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKKAQEKKRPVSPTS 122          
BLAST of DY258044 vs. ExPASy Swiss-Prot
Match: MYB59_ARATH (Transcription factor MYB59 OS=Arabidopsis thaliana GN=MYB59 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 5.199e-19
Identity = 41/65 (63.08%), Postives = 53/65 (81.54%), Query Frame = 2
Query:    2 PDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANSTT 196
            P +KRG +TPQE+  +LELH+KWGNRWSKIA+ LPGRTDNEIKNYWRT ++K+A+  K   + T+
Sbjct:   59 PGLKRGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKKAQEKKRPMSPTS 123          
BLAST of DY258044 vs. ExPASy Swiss-Prot
Match: MYBA2_ORYSJ (Myb-related protein MYBAS2 OS=Oryza sativa subsp. japonica GN=MYBAS2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.184e-17
Identity = 37/58 (63.79%), Postives = 49/58 (84.48%), Query Frame = 2
Query:    2 PDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLK 175
            P +KRG ++P E+  ILELH++WGNRWS+IA+ LPGRTDNEIKNYWRT ++K+A+  K
Sbjct:   59 PGLKRGRMSPHEERLILELHARWGNRWSRIARRLPGRTDNEIKNYWRTHMRKKAQERK 116          
BLAST of DY258044 vs. ExPASy Swiss-Prot
Match: MYB15_ANTMA (Myb-related protein 315 OS=Antirrhinum majus GN=MYB315 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.084e-16
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 2
Query:    2 PDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANS 190
            PD+K+G LT  E+  I+ELH+  GNRWSKIA H+PGRTDNEIKNYW T ++K+ + L ID N+
Sbjct:   63 PDLKKGPLTEMEENQIIELHAHLGNRWSKIALHIPGRTDNEIKNYWNTHIKKKLKLLGIDPNN 125          
BLAST of DY258044 vs. ExPASy Swiss-Prot
Match: MYBA1_ORYSJ (Myb-related protein MYBAS1 OS=Oryza sativa subsp. japonica GN=MYBAS1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.416e-16
Identity = 35/65 (53.85%), Postives = 53/65 (81.54%), Query Frame = 2
Query:    2 PDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANSTT 196
            P +K G ++P+E+  I+ELH++WGNRWS+IA+ LPGRTDNEIKNYWRT ++K+A+  + D + ++
Sbjct:   59 PGLKHGRMSPKEEHLIIELHARWGNRWSRIARRLPGRTDNEIKNYWRTHMRKKAQERRGDMSPSS 123          
BLAST of DY258044 vs. ExPASy Swiss-Prot
Match: MYB2_PHYPA (Myb-related protein Pp2 OS=Physcomitrella patens GN=PP2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.325e-14
Identity = 36/63 (57.14%), Postives = 47/63 (74.60%), Query Frame = 2
Query:    2 PDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANS 190
            PD+KRG  +  E+  IL+LH+  GNRWS+IA  LPGRTDNEIKNYW TR++K+ R   +D N+
Sbjct:   63 PDLKRGIFSEAEENLILDLHATLGNRWSRIAAQLPGRTDNEIKNYWNTRLKKRLRSQGLDPNT 125          
BLAST of DY258044 vs. ExPASy Swiss-Prot
Match: MYB3_ARATH (Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.952e-14
Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = 2
Query:    2 PDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANS 190
            PD+KRGN T +E   I++LHS  GN+WS IA  LPGRTDNEIKNYW T ++++     ID NS
Sbjct:   63 PDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSRGIDPNS 125          
The following BLAST results are available for this feature:
BLAST of DY258044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
MYB21_ARATH6.561e-2267.19Transcription factor MYB21 OS=Arabidopsis thaliana... [more]
MYB05_ANTMA3.256e-2169.70Myb-related protein 305 OS=Antirrhinum majus GN=MY... [more]
MYB40_ANTMA1.237e-2076.79Myb-related protein 340 OS=Antirrhinum majus GN=MY... [more]
MYB48_ARATH3.981e-1963.08Transcription factor MYB48 OS=Arabidopsis thaliana... [more]
MYB59_ARATH5.199e-1963.08Transcription factor MYB59 OS=Arabidopsis thaliana... [more]
MYBA2_ORYSJ2.184e-1763.79Myb-related protein MYBAS2 OS=Oryza sativa subsp. ... [more]
MYB15_ANTMA1.084e-1660.32Myb-related protein 315 OS=Antirrhinum majus GN=MY... [more]
MYBA1_ORYSJ1.416e-1653.85Myb-related protein MYBAS1 OS=Oryza sativa subsp. ... [more]
MYB2_PHYPA1.325e-1457.14Myb-related protein Pp2 OS=Physcomitrella patens G... [more]
MYB3_ARATH2.952e-1457.14Transcription factor MYB3 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DA10ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258044 ID=DY258044; Name=DY258044; organism=Citrus clementina; type=EST; length=1017bp
ACCTGATGTGAAGAGAGGCAATCTCACTCCACAAGAACAAATGTCAATTC
TTGAACTCCATTCTAAGTGGGGTAATAGGTGGTCGAAGATTGCTCAGCAC
TTACCAGGAAGGACTGACAATGAAATCAAGAACTATTGGAGAACTCGTGT
TCAGAAGCAAGCACGGCATCTAAAGATAGACGCAAATAGCACGACATTTC
AAGAGATTATTCGATGTTTTTGGATGCCAAGATTGCTTCAAAAGATGGAC
ACATCATCATCATCATCACCATCGGCTTTATCTCAGAATCCTACAATTAA
TTCTCAGCCGTTTGATCATGCTTTTCATCATCAGGGATCAGCATCGGCAC
AAATAATATCCCATCAAGTTCCTTACGATCGGGGAGCGATTGATCATCAA
GAATTGAATTCATCATCAGACTCGGAGCACGGCATTGGCACCAGCACTTC
CTGCATTTCTTCATCCGAATCAATGAATTTTTCCCAAGTGTCTCAGTTTT
CGGAGTACCCAACCGGTGGCGACCATTTTCATGCTAGTAATAATGATAGC
AGTGAGTACAACACTTTTGCAAAAGATTTCTGTCAATTTGACAGCAACCG
CTATGACATGGAAAACATCAGCCAGCCGGAAACCATGCCGGCGCCGCTGG
CCGGAGACTTCAACAACTGGGTTCAGGAATATGATTTAGTAGATAACATG
TGGGGAGCATGGATGAACTTTGGCAACTCAGGAACCCATGCGGACATTAA
TGAGTTTAATTAGTCATTTGCCAAGAGGTAATTAGATATTAATCACTAGG
ACAGAGTCATTAGCAACTGTTAATTAATTCTCTACTCAGAATATGAGGTT
AATCGACTGTTTGATTTTTTTATCTAACTTCAAAAATCAAACATATGTCT
NATAAGTGTGCTTTTCAATGTTGGGTTTCTTGTTTTGAACAATAAATTGT
AACTTCACAAAAGTAAATGTTACGGTACAAATTTGATGGCCTTGGCATTA
CCATTTACAATACTACC
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