DY258045

Overview
NameDY258045
Unique NameDY258045
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1322
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9457 contig Ccv1_Contig9457:46..1367. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258045 vs. ExPASy Swiss-Prot
Match: NAC8_ARATH (NAC domain-containing protein 8 OS=Arabidopsis thaliana GN=NAC008 PE=2 SV=1)

HSP 1 Score: 404.06 bits (1037), Expect = 9.854e-112
Identity = 216/394 (54.82%), Postives = 261/394 (66.24%), Query Frame = 3
Query:   33 MAGPSWLVDSNRIATKIKSASGTGDPERVKWKSNPTKACPNCHHVIDNSDVAHEWPGLPRGVKFDPSDQEIVWHLLAKAGLEGLNPHPFIDEFIPTVDQDGGICYTHPQNLPGVKQDGSAAHFFYRAIKAYSTGTRKRRKINGDDFGEVRWHKTGRTKPVMLDGVQKGCKKIMVLYMSMVRGGKAEKTNWVMHQYHLGTEEDEKDDNYVISKIFYQQQQ---AKYGDKIEQDILEST-GAIIPKVDPVTPKSVTPDPPRTER-------------HPDFGPRQESPTTDAFDQQSEIRRVEELPPLCENPGSNDKIE--AENHANMMVGYND**KSSRRPPQMVGQ*FAKW--AYRKNILESQQLPKT----PYLIGKEFLERPAPKGNAK*KE 1139
            MAG SWL+DSNRIATKI SAS + DP +V WKSNP++ CP C HVIDNSDV  +WPGLPRGVKFDPSD EI+WHLLAK+GL GL+ HPFIDEFIPTV+QD GICYTHP+NLPGVK DG+ +HFF++AIKAYSTGTRKRRKI+ DDFG+VRWHKTGRTKPV+LDGVQ+GCKKIMVLY     GGKA KTNWVMHQYHLG EEDEK+ +YV+SKIFYQQ Q    K GDK EQ++ E    A+ P  DPVTPK  TP+P    R               D+    E    +  +       V+ + P  E P S  ++E   EN A  M+   +  +   R  +  G+    W  +  + IL SQQL +       L+G +  E     G+ K K+
Sbjct:    1 MAGRSWLIDSNRIATKIMSASASSDPRQVVWKSNPSRHCPKCQHVIDNSDVVDDWPGLPRGVKFDPSDPEIIWHLLAKSGLSGLSSHPFIDEFIPTVNQDDGICYTHPKNLPGVKSDGTVSHFFHKAIKAYSTGTRKRRKIHDDDFGDVRWHKTGRTKPVVLDGVQRGCKKIMVLY-----GGKAVKTNWVMHQYHLGIEEDEKEGDYVVSKIFYQQPQQLVVKRGDKAEQEVSEDIFAAVTPTADPVTPKLATPEPRNAVRICSDSHIASDYVTPSDYVSAHEVSLAETSEVMCMEDEVQSIQPNHERPSSGPELEHGLENGAKEMLDDKE-EQEKDRDNENQGEEDPTWFDSGSQFILNSQQLVEALSLCDDLLGSQDREENTNSGSLKDKQ 388          
BLAST of DY258045 vs. ExPASy Swiss-Prot
Match: NAC4_ARATH (NAC domain-containing protein 4 OS=Arabidopsis thaliana GN=NAC004 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 8.029e-13
Identity = 55/190 (28.95%), Postives = 88/190 (46.32%), Query Frame = 3
Query:  207 PRGVKFDPSDQEIVWHLLAKAGLEGLNPHPFIDEFIPTVDQDGGICYTHPQNLPG---VKQDGSAAHFFYRAIKAYSTGTRKRRKINGDDFGEVRWHKTGRTKPVMLDGVQK---GCKKIMVLYMSMVRGGKAEKTNWVMHQYHLGTEEDEKDDNYVISKIFYQQQQAKYGDKIEQDILESTGAIIPKVD 758
            P G +F P+D+EIV H L    L+    H  +DE I TVD    IC   P +LP    +K      +FF      Y+ G ++RR+ N        W KTG+T  VM     +   G K+++V      +     KT+WVMH+YH  +    +   Y + K+ ++ ++ +         +E   ++IP V+
Sbjct:    4 PVGFRFRPNDEEIVDHYLRPKNLDSDTSH--VDEVISTVD----ICSFEPWDLPSKSMIKSRDGVWYFFSVKEMKYNRGDQQRRRTNSGF-----WKKTGKTMTVMRKRGNREKIGEKRVLVF-----KNRDGSKTDWVMHEYHATSLFPNQMMTYTVCKVEFKGEETEISSSSTGSEIEQIHSLIPLVN 177          
The following BLAST results are available for this feature:
BLAST of DY258045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NAC8_ARATH9.854e-11254.82NAC domain-containing protein 8 OS=Arabidopsis tha... [more]
NAC4_ARATH8.029e-1328.95NAC domain-containing protein 4 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB2DA11ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258045 ID=DY258045; Name=DY258045; organism=Citrus clementina; type=EST; length=1322bp
GCGGGGAAAGAAGCGAAGCAGAGCAAAAAGTGATGGCTGGACCATCATGG
TTGGTGGACAGTAACAGAATTGCTACAAAGATCAAGAGTGCATCTGGCAC
AGGTGATCCGGAAAGAGTTAAATGGAAGAGCAATCCTACAAAAGCTTGTC
CCAATTGTCACCATGTCATCGACAACAGTGATGTTGCTCACGAGTGGCCA
GGATTACCCAGGGGTGTGAAATTTGACCCATCTGATCAAGAAATTGTATG
GCATTTACTTGCAAAAGCTGGTTTGGAAGGCTTGAATCCCCATCCATTTA
TTGATGAGTTCATCCCAACTGTTGATCAAGATGGTGGAATCTGTTACACC
CATCCTCAGAATTTGCCAGGTGTTAAGCAAGATGGAAGTGCAGCACACTT
CTTTTATAGAGCTATCAAGGCTTACAGTACTGGAACTCGAAAGCGTAGAA
AGATAAATGGTGATGATTTTGGTGAGGTGCGCTGGCACAAGACTGGCAGG
ACTAAACCAGTGATGTTAGATGGGGTTCAAAAAGGGTGTAAGAAGATTAT
GGTTCTCTATATGAGCATGGTCAGGGGAGGGAAAGCTGAGAAAACTAATT
GGGTGATGCACCAGTATCACTTGGGAACAGAGGAGGATGAAAAGGATGAC
AACTATGTTATATCTAAAATATTTTATCAGCAGCAACAGGCCAAGTATGG
TGATAAAATTGAACAAGATATTCTTGAAAGCACTGGTGCCATCATTCCAA
AAGTAGATCCAGTCACTCCTAAGTCAGTGACTCCAGACCCACCTCGTACT
GAAAGGCATCCTGATTTTGGCCCACGACAAGAGTCTCCTACTACAGATGC
ATTTGATCAGCAATCTGAGATAAGGCGTGTGGAAGAGCTTCCACCTTTAT
GTGAAAACCCCGGGTCTAATGATAAAATCGAAGCAGAAAATCATGCTAAT
ATGATGGTTGGGTATAATGATTAATGAAAGTCAAGCAGGAGACCACCGCA
AATGGTGGGACAGTGATTCGCAAAATGGGCTTATCGCAAAAATATCTTGG
AATCCCAACAACTACCAAAAACCCCTTACCTCATTGGCAAGGAGTTCTTG
GAACGGCCAGCTCCGAAGGGAAATGCCAAATGAAAGGAAACATCAAAGGG
GAAAAACCGGGGTTCTTTTTAAATTAAGCCTTCCGGTTAGGAATTTGGAA
AACATTTTTAAAAAAAAGGAATTTTGGGAAGGGAAGGGTGTCAAAAATGT
AATTATTCCCTCGTGTAATTCCCCTGGACAAAAAAACATCCAAAAAAAAC
TCTCCATATAAAAACCCCCCCC
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