DY258046

Overview
NameDY258046
Unique NameDY258046
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length781
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6825 contig Ccv1_Contig6825:398..1178. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258046 vs. ExPASy Swiss-Prot
Match: BGAL_MALDO (Beta-galactosidase OS=Malus domestica PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.136e-41
Identity = 73/119 (61.34%), Postives = 90/119 (75.63%), Query Frame = 3
Query:    6 QGTSLALKLPMTWYKTTFIVPPGNDPLALNMGAMGKGMVWINGQSIGRRWPXXXXXXXXXXXXXAGTYTEKKCRTYWGKPSQPWYHVPRSWLKPSGNLLVVFEKWGGEPHWISLLKRTT 362
            +G S+A K P+TWYK TF  PPG+ PLAL+MG+MGKG +WINGQS+GR WP             AGTY +KKCRT+ G+PSQ WYH+PRSWL P+GNLLVVFE+WGG+P  ISL++R T
Sbjct:  606 EGPSMAEKQPLTWYKATFNAPPGDAPLALDMGSMGKGQIWINGQSVGRHWPGYIARGSCGDCSYAGTYDDKKCRTHCGEPSQRWYHIPRSWLTPTGNLLVVFEEWGGDPSRISLVERGT 724          
BLAST of DY258046 vs. ExPASy Swiss-Prot
Match: BGA12_ARATH (Beta-galactosidase 12 OS=Arabidopsis thaliana GN=BGAL12 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.149e-37
Identity = 69/118 (58.47%), Postives = 87/118 (73.73%), Query Frame = 3
Query:    6 QGTSLALKLPMTWYKTTFIVPPGNDPLALNMGAMGKGMVWINGQSIGRRWPXXXXXXXXXXXXXAGTYTEKKCRTYWGKPSQPWYHVPRSWLKPSGNLLVVFEKWGGEPHWISLLKRT 359
            +G+ +A K P+TWYK+TF  P GN+PLAL+M  MGKG +WINGQ+IGR WP             AGT+TEKKC +  G+ SQ WYHVPRSWLKP+ NL++V E+WGGEP+ ISL+KRT
Sbjct:  609 EGSLVAKKQPLTWYKSTFDSPTGNEPLALDMNTMGKGQMWINGQNIGRHWPAYTARGKCERCSYAGTFTEKKCLSNCGEASQRWYHVPRSWLKPTNNLVIVLEEWGGEPNGISLVKRT 726          
BLAST of DY258046 vs. ExPASy Swiss-Prot
Match: BGAL1_ARATH (Beta-galactosidase 1 OS=Arabidopsis thaliana GN=BGAL1 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.787e-37
Identity = 68/118 (57.63%), Postives = 85/118 (72.03%), Query Frame = 3
Query:    3 AQGTSLALKLPMTWYKTTFIVPPGNDPLALNMGAMGKGMVWINGQSIGRRWPXXXXXXXXXXXXXAGTYTEKKCRTYWGKPSQPWYHVPRSWLKPSGNLLVVFEKWGGEPHWISLLKR 356
            A+G  +A K P+TWYKTTF  P G+ PLA++MG+MGKG +WINGQS+GR WP              GT+ E KC    G+ SQ WYHVPRSWLKPSGNLLVVFE+WGG+P+ I+L++R
Sbjct:  615 AEGAFVAQKQPLTWYKTTFSAPAGDSPLAVDMGSMGKGQIWINGQSLGRHWPAYKAVGSCSECSYTGTFREDKCLRNCGEASQRWYHVPRSWLKPSGNLLVVFEEWGGDPNGITLVRR 732          
BLAST of DY258046 vs. ExPASy Swiss-Prot
Match: BGAL2_ARATH (Beta-galactosidase 2 OS=Arabidopsis thaliana GN=BGAL2 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 6.252e-37
Identity = 67/111 (60.36%), Postives = 81/111 (72.97%), Query Frame = 3
Query:   27 KLPMTWYKTTFIVPPGNDPLALNMGAMGKGMVWINGQSIGRRWPXXXXXXXXXXXXXAGTYTEKKCRTYWGKPSQPWYHVPRSWLKPSGNLLVVFEKWGGEPHWISLLKRT 359
            K P+TWYK++F  P GN+PLAL+M  MGKG VW+NG +IGR WP             AG Y EKKC ++ G+PSQ WYHVPRSWLKP GNLLV+FE+WGG+P  ISL+KRT
Sbjct:  615 KQPLTWYKSSFDTPRGNEPLALDMNTMGKGQVWVNGHNIGRHWPAYTARGNCGRCNYAGIYNEKKCLSHCGEPSQRWYHVPRSWLKPFGNLLVIFEEWGGDPSGISLVKRT 725          
BLAST of DY258046 vs. ExPASy Swiss-Prot
Match: BGAL_DIACA (Putative beta-galactosidase OS=Dianthus caryophyllus GN=CARSR12 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.393e-36
Identity = 71/114 (62.28%), Postives = 81/114 (71.05%), Query Frame = 3
Query:   21 ALKLPMTWYKTTFIVPPGNDPLALNMGAMGKGMVWINGQSIGRRWPXXXXXXXXXXXXX-AGTYTEKKCRTYWGKPSQPWYHVPRSWLKPSGNLLVVFEKWGGEPHWISLLKRT 359
            A K P+ WYKTTF  P GNDPLAL++G+MGKG  WINGQSIGR W               AGTYTE KC +  GK SQ WYHVPRSWL+P GNLLVVFE+WGG+  W+SL+KRT
Sbjct:  616 AWKQPLVWYKTTFDAPGGNDPLALDLGSMGKGQAWINGQSIGRHWSNNIAKGSCNDNCNYAGTYTETKCLSDCGKSSQKWYHVPRSWLQPRGNLLVVFEEWGGDTKWVSLVKRT 729          
BLAST of DY258046 vs. ExPASy Swiss-Prot
Match: BGAL_SOLLC (Beta-galactosidase OS=Solanum lycopersicum PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.376e-36
Identity = 68/117 (58.12%), Postives = 84/117 (71.79%), Query Frame = 3
Query:    6 QGTSLALKLPMTWYKTTFIVPPGNDPLALNMGAMGKGMVWINGQSIGRRWPXXXXXXXXXXXXXAGTYTEKKCRTYWGKPSQPWYHVPRSWLKPSGNLLVVFEKWGGEPHWISLLKR 356
            +G+ +A K P++WYKTTF  P GN+PLAL+M  MGKG VWINGQS+GR WP              G + EKKC T  G+ SQ WYHVPRSWL P+GNLLVVFE+WGG+P+ I+L+KR
Sbjct:  604 EGSLVAQKQPLSWYKTTFNAPDGNEPLALDMNTMGKGQVWINGQSLGRHWPAYKSSGSCSVCNYTGWFDEKKCLTNCGEGSQRWYHVPRSWLYPTGNLLVVFEEWGGDPYGITLVKR 720          
BLAST of DY258046 vs. ExPASy Swiss-Prot
Match: BGAL_ASPOF (Beta-galactosidase OS=Asparagus officinalis PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.480e-35
Identity = 66/111 (59.46%), Postives = 78/111 (70.27%), Query Frame = 3
Query:   27 KLPMTWYKTTFIVPPGNDPLALNMGAMGKGMVWINGQSIGRRWPXXXXXXXXXXXXXAGTYTEKKCRTYWGKPSQPWYHVPRSWLKPSGNLLVVFEKWGGEPHWISLLKRT 359
            K P+TWYKT F  PPGN+PLAL+M  MGKG +WINGQSIGR WP              GTY EKKC +  G+ SQ WYHVPRSWL P+GN LVV E+WGG+P  IS++KR+
Sbjct:  609 KQPLTWYKTFFNAPPGNEPLALDMNTMGKGQIWINGQSIGRYWPAYKASGSCGSCDYRGTYNEKKCLSNCGEASQRWYHVPRSWLIPTGNFLVVLEEWGGDPTGISMVKRS 719          
BLAST of DY258046 vs. ExPASy Swiss-Prot
Match: BGAL4_ARATH (Beta-galactosidase 4 OS=Arabidopsis thaliana GN=BGAL4 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.104e-33
Identity = 68/118 (57.63%), Postives = 84/118 (71.19%), Query Frame = 3
Query:    6 QGTSLALKLPMTWYKTTFIVPPGNDPLALNMGAMGKGMVWINGQSIGRRWPXXXXXXXXXXXXXAGTYTEKKCRTYWGKPSQPWYHVPRSWLKPSGNLLVVFEKWGGEPHWISLLKRT 359
            QG+ +A K P+TWYK+TF  P GN+PLAL+M  MGKG VWING++IGR WP             AGT+  KKC +  G+ SQ WYHVPRSWLK S NL+VVFE+ GG+P+ ISL+KRT
Sbjct:  608 QGSFVAKKQPLTWYKSTFATPAGNEPLALDMNTMGKGQVWINGRNIGRHWPAYKAQGSCGRCNYAGTFDAKKCLSNCGEASQRWYHVPRSWLK-SQNLIVVFEELGGDPNGISLVKRT 724          
BLAST of DY258046 vs. ExPASy Swiss-Prot
Match: BGAL2_ORYSJ (Beta-galactosidase 2 OS=Oryza sativa subsp. japonica GN=Os01g0580200 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.193e-33
Identity = 62/111 (55.86%), Postives = 76/111 (68.47%), Query Frame = 3
Query:   27 KLPMTWYKTTFIVPPGNDPLALNMGAMGKGMVWINGQSIGRRWPXXXXXXXXXXXXXAGTYTEKKCRTYWGKPSQPWYHVPRSWLKPSGNLLVVFEKWGGEPHWISLLKRT 359
            K P+TWYK  F  P G++PLAL+M +MGKG +WINGQ IGR WP              G Y E KC+T  G  SQ WYHVPRSWL P+GNLLV+FE+WGG+P  IS++KR+
Sbjct:  609 KQPLTWYKAFFNAPDGDEPLALDMSSMGKGQIWINGQGIGRYWPGYKASGNCGTCDYRGEYDETKCQTNCGDSSQRWYHVPRSWLSPTGNLLVIFEEWGGDPTGISMVKRS 719          
BLAST of DY258046 vs. ExPASy Swiss-Prot
Match: BGAL3_ARATH (Beta-galactosidase 3 OS=Arabidopsis thaliana GN=BGAL3 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.402e-30
Identity = 59/109 (54.13%), Postives = 75/109 (68.81%), Query Frame = 3
Query:   33 PMTWYKTTFIVPPGNDPLALNMGAMGKGMVWINGQSIGRRWPXXXXXXXXXXXXXAGTYTEKKCRTYWGKPSQPWYHVPRSWLKPSGNLLVVFEKWGGEPHWISLLKRT 359
            P+TW+KT F  P GN+PLAL+M  MGKG +W+NG+SIGR W               GTY   KC+T  G+P+Q WYHVPR+WLKPS NLLV+FE+ GG P  +SL+KR+
Sbjct:  625 PLTWHKTYFDAPEGNEPLALDMEGMGKGQIWVNGESIGRYWTAFATGDCSHCSY-TGTYKPNKCQTGCGQPTQRWYHVPRAWLKPSQNLLVIFEELGGNPSTVSLVKRS 732          
The following BLAST results are available for this feature:
BLAST of DY258046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
BGAL_MALDO7.136e-4161.34Beta-galactosidase OS=Malus domestica PE=1 SV=1[more]
BGA12_ARATH2.149e-3758.47Beta-galactosidase 12 OS=Arabidopsis thaliana GN=B... [more]
BGAL1_ARATH4.787e-3757.63Beta-galactosidase 1 OS=Arabidopsis thaliana GN=BG... [more]
BGAL2_ARATH6.252e-3760.36Beta-galactosidase 2 OS=Arabidopsis thaliana GN=BG... [more]
BGAL_DIACA1.393e-3662.28Putative beta-galactosidase OS=Dianthus caryophyll... [more]
BGAL_SOLLC2.376e-3658.12Beta-galactosidase OS=Solanum lycopersicum PE=1 SV... [more]
BGAL_ASPOF4.480e-3559.46Beta-galactosidase OS=Asparagus officinalis PE=2 S... [more]
BGAL4_ARATH1.104e-3357.63Beta-galactosidase 4 OS=Arabidopsis thaliana GN=BG... [more]
BGAL2_ORYSJ4.193e-3355.86Beta-galactosidase 2 OS=Oryza sativa subsp. japoni... [more]
BGAL3_ARATH7.402e-3054.13Beta-galactosidase 3 OS=Arabidopsis thaliana GN=BG... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DB01ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258046 ID=DY258046; Name=DY258046; organism=Citrus clementina; type=EST; length=781bp
GGGCACAGGGAACATCGTTGGCCCTAAAATTACCGATGACGTGGTACAAG
ACTACTTTCATTGTACCGCCAGGCAACGACCCGTTAGCTTTAAACATGGG
TGCAATGGGAAAGGGGATGGTTTGGATCAATGGTCAAAGTATTGGGCGCC
GCTGGCCTGGATATAGAAGAAATGGAAATTGTGGTGGTTGTAATTATGCT
GGAACTTACACCGAGAAGAAATGCCGAACTTACTGGGGAAAGCCCTCTCA
ACCATGGTATCACGTTCCCCGCTCATGGCTGAAGCCGAGTGGAAACCTGT
TGGTTGTGTTTGAAAAATGGGGCGGTGAACCACATTGGATCTCTTTGCTC
AAGAGAACAACATAAACAGCTACAACAATTATTTTCTTTTTCTTTTTCTC
ATTCTTCAATAATTCAAGCATACGCTTCCCTCATTTGCCAAGGTGATGAT
GGTTTGACTCCGACAAACGGGCAAACCAAAGTGTCCAACCATACCCATAA
TCTGGCCAAAGCCAAGAAGTATAGATTGTGAAGTTGTTGCAAGGATGCTC
CTTGTTGTATGTACATAGTCATATTCAAGCTATATATTTGTCAATATAGC
TCTGCAAGCATACTTAAACGTCATTCAGTCTGATAGGCAAAAGTGTTAGT
TCCGCAAACATTCATGTAGGCTCGCTGGGTTTCACTCTTCATCATCTACA
AGTTTATAGTGGAAATCTTTTATTTCCTTGTCATTTAAAAATAAGTGCGA
AAGTAATACATAGCAGCTTTTGAATTGCATC
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