DY258051

Overview
NameDY258051
Unique NameDY258051
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length977
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13542 contig Ccv1_Contig13542:711..1687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258051 vs. ExPASy Swiss-Prot
Match: Y1390_ARATH (Uncharacterized protein At1g03900 OS=Arabidopsis thaliana GN=At1g03900 PE=2 SV=1)

HSP 1 Score: 350.517 bits (898), Expect = 8.513e-96
Identity = 190/286 (66.43%), Postives = 209/286 (73.08%), Query Frame = 2
Query:   74 MSFDDEE---SFEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQPGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINVKPKPTXXXXXXXXXXXXXXXXXXXXXXXXXLAPPPSGMGKIRXXXXXXXXXXXXXRINSASHNNGVRAPKETTRHSTTDPSSDLSQIERNFPTSATSGSSKT--PASGWAAF 916
            MSF++EE   +FEHTLLVVREV VYKIPPRTTSGGYKCGEWLQSDKIW+GRLRVVSCKDRCEIRLED NSG+LFAACFV PG+RENSVE  LDSSRYFVL+I+DG GK+AFIGLGF ERNEAFDFNVALSDHEKYVRRE EKE+GE SESD HIDIHPAVNHRLKEGETIRINVKPKPT                         LAPPP   G  R             RI S          KE+ R+   +P SDLSQ+++N P++A SGSSK+   ASGWAAF
Sbjct:    1 MSFEEEEEEETFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDRCEIRLEDSNSGDLFAACFVDPGRRENSVEPSLDSSRYFVLRIDDGRGKYAFIGLGFAERNEAFDFNVALSDHEKYVRREKEKETGETSESDNHIDIHPAVNHRLKEGETIRINVKPKPT----TNGTGMLSAALSGTGKPKPLALAPPPKAAGVTRSPLPPPPNDPVASRIAS-------DGCKESRRN---EPLSDLSQLKKNLPSTAGSGSSKSTGAASGWAAF 272          
BLAST of DY258051 vs. ExPASy Swiss-Prot
Match: NECP2_RAT (Adaptin ear-binding coat-associated protein 2 OS=Rattus norvegicus GN=Necap2 PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 8.381e-35
Identity = 79/169 (46.75%), Postives = 107/169 (63.31%), Query Frame = 2
Query:   86 DEESFEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINV 586
            +E  +E  L V  EV VY+IPPR T+ GY+  EW      W+GRLR+ +      I+LED  SGELFA   V   PG    +VE+V DSSRYFV++IEDG G+ AFIG+GF +R +AFDFNVAL DH K+V+++ E      +  +G     P ++   KEG+TI+IN+
Sbjct:    2 EESEYESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGKVAYIKLEDRTSGELFAQAPVDQFPG---TAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDEG-----PKLDLGFKEGQTIKINI 162          
BLAST of DY258051 vs. ExPASy Swiss-Prot
Match: NECP1_PONAB (Adaptin ear-binding coat-associated protein 1 OS=Pongo abelii GN=NECAP1 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 8.381e-35
Identity = 78/168 (46.43%), Postives = 110/168 (65.48%), Query Frame = 2
Query:   89 EESFEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINV 586
            E  +E  L V  +V VY+IPPR ++ GY+  +W      WTGRLR+ S      I+LED  SGELFA   V+  PG    +VETV DSSRYFV++I+DGTG+ AFIG+GF +R +AFDFNV+L DH K+V++E      E+S+    +D  P ++   KEG+TI++++
Sbjct:    4 ELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKTAYIKLEDKVSGELFAQAPVEQYPGI---AVETVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQE-----SEISKESQEMDARPKLDLGFKEGQTIKLSI 163          
BLAST of DY258051 vs. ExPASy Swiss-Prot
Match: NECP2_MOUSE (Adaptin ear-binding coat-associated protein 2 OS=Mus musculus GN=Necap2 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.095e-34
Identity = 79/169 (46.75%), Postives = 107/169 (63.31%), Query Frame = 2
Query:   86 DEESFEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINV 586
            +E  +E  L V  EV VY+IPPR T+ GY+  EW      W+GRLR+ +      I+LED  SGELFA   V   PG    +VE+V DSSRYFV++IEDG G+ AFIGLGF +R +AFDFNVAL DH K+V+++ E      +  +G     P ++   K+G+TI+IN+
Sbjct:    2 EESEYESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGKVAYIKLEDRTSGELFAQAPVDQFPG---TAVESVTDSSRYFVIRIEDGNGRRAFIGLGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDEG-----PKLDLGFKDGQTIKINI 162          
BLAST of DY258051 vs. ExPASy Swiss-Prot
Match: NECP1_RAT (Adaptin ear-binding coat-associated protein 1 OS=Rattus norvegicus GN=Necap1 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.430e-34
Identity = 82/170 (48.24%), Postives = 111/170 (65.29%), Query Frame = 2
Query:   89 EESFEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRRELE--KESGEMSESDGHIDIHPAVNHRLKEGETIRINV 586
            E  +E  L V  +V VY+IPPR ++ GY+  +W      WTGRLR+ S      I+LED  SGELFA   V+  PG    +VETV DSSRYFV++I+DGTG+ AFIG+GF +R +AFDFNV+L DH K+V++E E  KES EM       D  P ++   KEG+TI++++
Sbjct:    4 ELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGELFAQAPVEQYPGI---AVETVADSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQETEISKESQEM-------DSRPKLDLGFKEGQTIKLSI 163          
BLAST of DY258051 vs. ExPASy Swiss-Prot
Match: NECP1_BOVIN (Adaptin ear-binding coat-associated protein 1 OS=Bos taurus GN=NECAP1 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.430e-34
Identity = 78/168 (46.43%), Postives = 111/168 (66.07%), Query Frame = 2
Query:   89 EESFEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINV 586
            E  +E  L V  +V VY+IPPR ++ GY+  +W      WTGRLR+ S      I+LED  SGELFA   V+  PG    +VETV DSSRYFV++I+DGTG+ AFIG+GF++R +AFDFNV+L DH K+V++E      E+S+    +D  P ++   KEG+TI++++
Sbjct:    4 ELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKVAYIKLEDKVSGELFAQAPVEQYPGI---AVETVTDSSRYFVIRIQDGTGRSAFIGIGFSDRGDAFDFNVSLQDHFKWVKQE-----SEISKESQEMDSRPKLDLGFKEGQTIKLSI 163          
BLAST of DY258051 vs. ExPASy Swiss-Prot
Match: NECP1_MOUSE (Adaptin ear-binding coat-associated protein 1 OS=Mus musculus GN=Necap1 PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.867e-34
Identity = 82/170 (48.24%), Postives = 111/170 (65.29%), Query Frame = 2
Query:   89 EESFEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRRELE--KESGEMSESDGHIDIHPAVNHRLKEGETIRINV 586
            E  +E  L V  +V VY+IPPR ++ GY+  +W      WTGRLR+ S      I+LED  SGELFA   V+  PG    +VETV DSSRYFV++I+DGTG+ AFIG+GF +R +AFDFNV+L DH K+V++E E  KES EM       D  P ++   KEG+TI++++
Sbjct:    4 ELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGELFAQAPVEQYPGI---AVETVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQETEISKESQEM-------DNRPKLDLGFKEGQTIKLSI 163          
BLAST of DY258051 vs. ExPASy Swiss-Prot
Match: NECP2_HUMAN (Adaptin ear-binding coat-associated protein 2 OS=Homo sapiens GN=NECAP2 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.438e-34
Identity = 77/169 (45.56%), Postives = 106/169 (62.72%), Query Frame = 2
Query:   86 DEESFEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINV 586
            +E  +E  L V  +V VY+IPPR T+ GY+  EW      W+GRLR+ +      I+LED  SGELFA   V   PG    +VE+V DSSRYFV++IEDG G+ AFIG+GF +R +AFDFNVAL DH K+V+++ E      +   G     P ++   KEG+TI++N+
Sbjct:    2 EESGYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQMAYIKLEDRTSGELFAQAPVDQFPG---TAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDQG-----PKLDLGFKEGQTIKLNI 162          
BLAST of DY258051 vs. ExPASy Swiss-Prot
Match: NECP1_HUMAN (Adaptin ear-binding coat-associated protein 1 OS=Homo sapiens GN=NECAP1 PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 2.438e-34
Identity = 78/166 (46.99%), Postives = 108/166 (65.06%), Query Frame = 2
Query:   89 EESFEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRI 580
            E  +E  L V  +V VY+IPPR ++ GY+  +W      WTGRLR+ S      I+LED  SGELFA   V+  PG    +VETV DSSRYFV++I+DGTG+ AFIG+GF +R +AFDFNV+L DH K+V++E      E+S+    +D  P ++   KEG+TI++
Sbjct:    4 ELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKTAYIKLEDKVSGELFAQAPVEQYPGI---AVETVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQE-----SEISKESQEMDARPKLDLGFKEGQTIKL 161          
BLAST of DY258051 vs. ExPASy Swiss-Prot
Match: NECP2_BOVIN (Adaptin ear-binding coat-associated protein 2 OS=Bos taurus GN=NECAP2 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 4.159e-34
Identity = 77/169 (45.56%), Postives = 106/169 (62.72%), Query Frame = 2
Query:   86 DEESFEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINV 586
            +E  +E  L V  +V VY+IPPR T+ GY+  EW      W+GRLR+ +      I+LED  SGELFA   V   PG    +VE+V DSSRYFV++IEDG G+ AFIG+GF +R +AFDFNVAL DH K+V+++ E      +   G     P ++   KEG+TI++N+
Sbjct:    2 EEAEYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQVAYIKLEDRTSGELFAQAPVDQFPG---TAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDQG-----PKLDLSFKEGQTIKLNI 162          
The following BLAST results are available for this feature:
BLAST of DY258051 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
Y1390_ARATH8.513e-9666.43Uncharacterized protein At1g03900 OS=Arabidopsis t... [more]
NECP2_RAT8.381e-3546.75Adaptin ear-binding coat-associated protein 2 OS=R... [more]
NECP1_PONAB8.381e-3546.43Adaptin ear-binding coat-associated protein 1 OS=P... [more]
NECP2_MOUSE1.095e-3446.75Adaptin ear-binding coat-associated protein 2 OS=M... [more]
NECP1_RAT1.430e-3448.24Adaptin ear-binding coat-associated protein 1 OS=R... [more]
NECP1_BOVIN1.430e-3446.43Adaptin ear-binding coat-associated protein 1 OS=B... [more]
NECP1_MOUSE1.867e-3448.24Adaptin ear-binding coat-associated protein 1 OS=M... [more]
NECP2_HUMAN2.438e-3445.56Adaptin ear-binding coat-associated protein 2 OS=H... [more]
NECP1_HUMAN2.438e-3446.99Adaptin ear-binding coat-associated protein 1 OS=H... [more]
NECP2_BOVIN4.159e-3445.56Adaptin ear-binding coat-associated protein 2 OS=B... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DC01ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258051 ID=DY258051; Name=DY258051; organism=Citrus clementina; type=EST; length=977bp
GATTGTTCTTCAATTCAGTTAAGTCACCTCAAATTCACTCGCATTTCTTC
TTCATTTCCCAAACAAAACGACCATGTCGTTCGACGACGAAGAATCGTTC
GAGCACACGCTCCTTGTCGTCCGCGAAGTCTGCGTTTACAAAATCCCCCC
GCGTACAACCTCTGGCGGCTACAAATGCGGCGAATGGCTGCAGTCCGACA
AGATCTGGACGGGCCGCCTCCGGGTCGTATCCTGTAAGGACCGGTGCGAG
ATCCGGTTAGAGGATCCCAACTCCGGTGAGCTCTTCGCAGCTTGTTTCGT
TCAACCCGGCCAGCGTGAGAACTCTGTGGAGACCGTCCTCGACTCGTCCC
GATATTTCGTGCTCAAGATCGAGGACGGTACAGGAAAACACGCGTTTATT
GGATTAGGCTTTAATGAGAGAAATGAAGCGTTTGATTTCAACGTCGCTTT
GTCGGATCACGAGAAATACGTGAGACGAGAACTCGAGAAGGAGAGTGGCG
AGATGAGTGAGAGCGATGGTCATATCGATATACATCCCGCAGTTAATCAT
AGATTAAAGGAAGGAGAAACGATCCGGATCAATGTGAAGCCCAAACCGAC
TAGTGGAACTGGCATGCTTTCAGCTGCAGGGCTGTCTGGGGCGGTTTCAG
TTTCGGCAAAGGCTAAAACGGTGGGGCTTGCCCCACCACCTAGTGGAATG
GGAAAAATAAGGGCACCTCCTCCGCCGCCACCTAATGATCCTGCTGCTGC
TAGGATCAACTCAGCTAGTCATAATAATGGTGTCAGGGCACCGAAGGAAA
CCACAAGGCATTCTACTACTGATCCTTCTTCAGACCTTTCCCAAATTGAG
AGGAATTTTCCTACATCAGCCACGAGTGGATCTAGTAAGACGCCTGCTTC
AGGATGGGCGGCTTTCTAAGTGTGTGACTATTTTTTTTTGTTTGTATGAG
ATGCTTGTTTGATGTTTTTTGTTCTAG
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