DY258066

Overview
NameDY258066
Unique NameDY258066
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length342
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258066_ssr183 microsatellite DY258066_ssr183:183..194. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9916 contig Ccv1_Contig9916:4..345. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258066 vs. ExPASy Swiss-Prot
Match: IFRH_SOLTU (Isoflavone reductase homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1
Query:    4 LSIQHSAFVKGDQTNFQIEPSFGVEASQLYPDVKYTTVDEYLSQFV 141
            LSI H+AFVKGD TNF+IEPSFGVEAS++YPDVKYT +DE L+Q+V
Sbjct:  263 LSIYHTAFVKGDHTNFEIEPSFGVEASEVYPDVKYTPIDEILNQYV 308          
BLAST of DY258066 vs. ExPASy Swiss-Prot
Match: IFRH_MAIZE (Isoflavone reductase homolog IRL OS=Zea mays GN=IRL PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.719e-13
Identity = 32/47 (68.09%), Postives = 44/47 (93.62%), Query Frame = 1
Query:    1 ILSIQHSAFVKGDQTNFQIEPSFGVEASQLYPDVKYTTVDEYLSQFV 141
            IL+I H+AFV+G+QT F+I+P+ GV+AS+LYPDVKYTTVDEYL++F+
Sbjct:  263 ILAIGHAAFVRGEQTGFEIDPAKGVDASELYPDVKYTTVDEYLNRFL 309          
BLAST of DY258066 vs. ExPASy Swiss-Prot
Match: IFRH_ARATH (Isoflavone reductase homolog P3 OS=Arabidopsis thaliana GN=At1g75280 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.057e-13
Identity = 35/46 (76.09%), Postives = 39/46 (84.78%), Query Frame = 1
Query:    1 ILSIQHSAFVKGDQTNFQIEPSFGVEASQLYPDVKYTTVDEYLSQF 138
            +LSI H+ FV GD TN  IEPSFGVEAS+LYPDVKYT+VDEYLS F
Sbjct:  265 VLSINHAVFVNGD-TNISIEPSFGVEASELYPDVKYTSVDEYLSYF 309          
The following BLAST results are available for this feature:
BLAST of DY258066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
IFRH_SOLTU1.104e-1476.09Isoflavone reductase homolog OS=Solanum tuberosum ... [more]
IFRH_MAIZE2.719e-1368.09Isoflavone reductase homolog IRL OS=Zea mays GN=IR... [more]
IFRH_ARATH6.057e-1376.09Isoflavone reductase homolog P3 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB2DE03ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258066 ID=DY258066; Name=DY258066; organism=Citrus clementina; type=EST; length=342bp
ATATTATCAATTCAGCACTCTGCTTTCGTGAAGGGAGATCAAACCAACTT
CCAGATTGAACCATCGTTTGGAGTTGAAGCCTCGCAGCTCTATCCTGATG
TCAAGTACACTACAGTTGATGAGTATCTCAGTCAGTTTGTGTAAACCCTT
CTCTGTTGAGCTGCAGCTTGCAGGATCTTGGGAAATAAATAAATAATTGG
CTTTTTGCCATCTTTGGTTTCTATATGTAAGCATTATGGTTGTTGGCCTT
ACTTTCGTTTGTTTCTCAATGTGTAGTTTGTAATTAACACCATATTGTGT
CGACTATGTCGGTACACAGTGATCAAATAAAGTAGCCCCATG
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