DY258067

Overview
NameDY258067
Unique NameDY258067
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1316
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10149 contig Ccv1_Contig10149:299..1614. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 1.253e-66
Identity = 126/132 (95.45%), Postives = 129/132 (97.73%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIKINQPD 397
            IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPT+KGQALADEYGIKFFETSAKTNLNVEEVFFSI RDIKQRL+DTDSRAEP TIKI+Q D
Sbjct:   68 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIGRDIKQRLSDTDSRAEPATIKISQTD 199          
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 1.873e-62
Identity = 119/124 (95.97%), Postives = 122/124 (98.39%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQ 373
            IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPT+KGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD+D+R E Q
Sbjct:   68 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADSDTRQEAQ 191          
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 2.222e-47
Identity = 92/127 (72.44%), Postives = 111/127 (87.40%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIK 382
            IWDTAGQERFRTITTAYYRGAMGILLVYDVTDE SF NIRNWIRNIEQHA+D+VNK+L+GNK DM E K+ V +S+G++LADEYGIKF ETSAK ++NVEE F S+A+DIK+R+ DT +  +PQ ++
Sbjct:   68 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAE-KKVVDSSRGKSLADEYGIKFLETSAKNSINVEEAFISLAKDIKKRMIDTPNE-QPQVVQ 192          
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: RAB8B_DICDI (Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 5.474e-46
Identity = 89/117 (76.07%), Postives = 104/117 (88.89%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADT 352
            IWDTAGQERFRTITTAYYRGAMGILLVYDVTDE SF +IRNWIRNIEQHASD+VNK+L+GNK DM E K+ V +S+G++LADEYGIKF ETSAK ++NVEE F  +A+DIK+R+ DT
Sbjct:   68 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGSIRNWIRNIEQHASDSVNKMLIGNKCDMTE-KKVVDSSRGKSLADEYGIKFLETSAKNSVNVEEAFIGLAKDIKKRMIDT 183          
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: YPTV2_VOLCA (GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 7.905e-45
Identity = 82/114 (71.93%), Postives = 101/114 (88.60%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL 343
            IWDTAGQERFRTIT+AYYRGA GI+LVYD+TDE+SFNN+RNW+RNIEQHASDNVNKILVGNK D+ E KR V  ++GQALADE+G +F+ETSAK N++VEE F ++A+D+  R+
Sbjct:   66 IWDTAGQERFRTITSAYYRGAQGIILVYDITDEASFNNVRNWMRNIEQHASDNVNKILVGNKLDLAEDKRVVSIARGQALADEFGFRFYETSAKDNVHVEEAFIAVAKDVLARM 179          
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 2.380e-41
Identity = 81/129 (62.79%), Postives = 102/129 (79.07%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIKIN 388
            IWDTAGQERFRTITTAYYRGAMGILL+YDVTD+ SF+N+R W  N+EQHAS+NV KIL+GNK D  E +R V   +GQALADE G+KF E SAKTN+NV+E FF++AR+IK++  D ++    Q   ++
Sbjct:   62 IWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDC-EDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREIKKQKIDAENEFSNQANNVD 189          
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: RAB8A_MACFA (Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 2.631e-40
Identity = 84/136 (61.76%), Postives = 106/136 (77.94%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIK----QRLADTDSRAEPQTIKINQPD 397
            IWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++GNK D+++ KR V   +G+ LA +YGIKF ETSAK N+NVE  FF++ARDIK    ++L     +   Q +KI  PD
Sbjct:   61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKIT-PD 194          
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: RAB8A_HUMAN (Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 2.631e-40
Identity = 84/136 (61.76%), Postives = 106/136 (77.94%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIK----QRLADTDSRAEPQTIKINQPD 397
            IWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++GNK D+++ KR V   +G+ LA +YGIKF ETSAK N+NVE  FF++ARDIK    ++L     +   Q +KI  PD
Sbjct:   61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKIT-PD 194          
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: RAB8A_CANFA (Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 2.631e-40
Identity = 84/136 (61.76%), Postives = 106/136 (77.94%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIK----QRLADTDSRAEPQTIKINQPD 397
            IWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++GNK D+++ KR V   +G+ LA +YGIKF ETSAK N+NVE  FF++ARDIK    ++L     +   Q +KI  PD
Sbjct:   61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKIT-PD 194          
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: RAB8A_RAT (Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 3.437e-40
Identity = 78/114 (68.42%), Postives = 98/114 (85.96%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL 343
            IWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++GNK D+++ KR V   +G+ LA +YGIKF ETSAK N+NVE  FF++ARDIK ++
Sbjct:   61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 173          
The following BLAST results are available for this feature:
BLAST of DY258067 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ARA3_ARATH1.253e-6695.45Ras-related protein ARA-3 OS=Arabidopsis thaliana ... [more]
RB1BV_BETVU1.873e-6295.97Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB... [more]
RAB8A_DICDI2.222e-4772.44Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]
RAB8B_DICDI5.474e-4676.07Ras-related protein Rab-8B OS=Dictyostelium discoi... [more]
YPTV2_VOLCA7.905e-4571.93GTP-binding protein yptV2 OS=Volvox carteri GN=YPT... [more]
YPT2_SCHPO2.380e-4162.79GTP-binding protein ypt2 OS=Schizosaccharomyces po... [more]
RAB8A_MACFA2.631e-4061.76Ras-related protein Rab-8A OS=Macaca fascicularis ... [more]
RAB8A_HUMAN2.631e-4061.76Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8... [more]
RAB8A_CANFA2.631e-4061.76Ras-related protein Rab-8A OS=Canis familiaris GN=... [more]
RAB8A_RAT3.437e-4068.42Ras-related protein Rab-8A OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DE05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258067 ID=DY258067; Name=DY258067; organism=Citrus clementina; type=EST; length=1316bp
AATATGGGATACTGCAGGTCAAGAGAGGTTTCGAACAATTACAACCGCAT
ACTACCGAGGAGCCATGGGAATATTGCTCGTATATGATGTCACCGACGAG
TCATCTTTCAACAACATTAGGAATTGGATCCGTAATATCGAACAGCATGC
ATCTGACAATGTAAACAAGATTCTGGTGGGTAACAAGGCCGACATGGACG
AAAGCAAAAGGGCTGTCCCCACTTCAAAGGGCCAAGCTCTTGCTGATGAA
TATGGCATCAAGTTCTTTGAGACTAGTGCAAAGACAAACCTAAATGTGGA
GGAGGTTTTCTTTTCAATTGCAAGGGACATCAAGCAAAGGCTTGCAGATA
CAGACTCTAGGGCTGAGCCTCAGACTATCAAAATTAACCAACCTGACCAG
GCAGGTGGGGCTGCTCAAGCTGCCCAAAGATCAGCTTGCTGCGGTTCTTA
AGCAATCTATGCGGGTGAGATCACATGGGTATATGTCAAGGCAATCATTT
TGGTTGGGACAACTAATTTTGTCAACTATATCATTGGTGCTTGTATTGTT
CTATCATTATTTTACAACTACCACACGCTTGCTTGTGAATGATAGATCAT
CTGTGTTTGGCATTAATTATATTATATTAGTTTCTTTCATTTCTTTTGTT
CCTTGTGCTGAAAAACCATGTAATGCCTGTTATTTTGCTTTTTCGATACT
GAGAATTAAATAGAAGCAGCCTTCTTTTCTCTGATCGCTTGTACGGCTTT
GCAATGGTGATATGAGAAAGGCCTTGAACATTTTGCAGTCAACACATATG
GCGTCTCAGCAAATTACAGAAGAAACTGTAAACTTGTGCACTGGAAACCC
CTTGCCCAAGGACATTGAGCAAATATTTTAATGGTTTCTGAAAGAATCAT
TTGCGGGCGCCCCCAGCCGAATACCTAAAAAGAAAATGAAAAAAATGATT
GGGGGGGGGCAAATATTGGGACGGAAAGGGACAACGGCTCGTAATTGAGA
ATAAAAAACCAATCGGGGGGGCCCCGTTCCAGCCACACGGAAGGGGGGGG
GAAAACCGCGGGTTACCCCCCTTAAATTTTTGGCTTGGCAACCACCCCCC
TTCCTCCTCGGGGGGGGGGGAAAAAAAAAAAAAAACCCCCCCCCCCCCTC
CTCCCCCCTTCCTCTTATGGGTGCGCCCCCCAGGGGGGGGGGGGGGGAGA
AAGGAAATGTTGGGGGAAATAATTTTTATTTTTTTCTATAATTTTCTCCC
CTCCCTTTTTTTTTTTTTTTTTTTAATAACACCATCCCCCCCCTATTTTT
TTTTTTGGGGTAACCA
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