DY258072

Overview
NameDY258072
Unique NameDY258072
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1243
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9357 contig Ccv1_Contig9357:11..1253. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258072 vs. ExPASy Swiss-Prot
Match: VRN1_ARATH (B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana GN=VRN1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.483e-21
Identity = 83/285 (29.12%), Postives = 127/285 (44.56%), Query Frame = 1
Query:  175 PFRFFRVILPSILEQKKLKIPKAFVGRFGYEELSSDATLKTPNGCVWQVGVTKDKGKIWLDDGWHHFVKDHSICVAYFLVFKYAKNSTFDVLIFDMTACEIDY---------PYHRGQPNKEEQNSIHDDEMQCENSTKKLGFRASCKNQMHHSQGSLHYKRLLNG---TAGNFSRPSSAVQDDHQTEFVDGQALSALLEEMGISISRSCLSLEAEERHRVIT---------AARLFEPRNPSFMVIVRGNE-RRKAYLFIPIKFVNNYLCEVPKFIKVQA*RKR 963
            PF F ++I  S +++K+L++P  FV +F  +ELS    L  P+G VW+VG+ K   KIW  DGW  FV  +SI + Y L+F+Y  NS F V IF+++  EI+Y           H  +    E     D E+   +S        S     +    S   + L  G          P    +   + +  D + +++         +RS     A  R R +T         AA+ FEP NP F V++R +   R   +++P  F   YL  +  FIKVQ   K+
Sbjct:    4 PF-FHKLIFSSTIQEKRLRVPDKFVSKFK-DELSVAVALTVPDGHVWRVGLRKADNKIWFQDGWQEFVDRYSIRIGYLLIFRYEGNSAFSVYIFNLSHSEINYHSTGLMDSAHNHFKRARLFEDLEDEDAEVIFPSSVYPSPLPESTV-PANKGYASSAIQTLFTGPVKAEEPTPTPKIPKKRGRKKKNADPEEINSSAPRDDDPENRSKFYESASARKRTVTAEERERAINAAKTFEPTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKVQLAEKQ 285          
BLAST of DY258072 vs. ExPASy Swiss-Prot
Match: Y3896_ARATH (B3 domain-containing protein At3g18960 OS=Arabidopsis thaliana GN=At3g18960 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.876e-16
Identity = 50/154 (32.47%), Postives = 85/154 (55.19%), Query Frame = 1
Query:  181 RFFRVILPSILEQKKLKIPKAFVGRFGYEELSSDATLKTPNGCVWQVGVTKDKGKIWLDDGWHHFVKDHSICVAYFLVFKYAKNSTFDVLIFDMTACEIDYPYHRGQPNKEEQNSIH----DDEMQCENSTKKLGFRASCKNQMHHSQGSLHYK 630
            +FF+++LPS ++ K +KIP  FV   G  +LS   TL+TP G    + + +   +IW  +GW  F + HSI   +FL+F+Y +NS+F V+IF+++ACE  YP           +++H    DD++      + +G + + KN    + G   +K
Sbjct:   29 KFFKLVLPSTMKDKMMKIPPRFVKLQG-SKLSEVVTLETPAGFKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEGHFLLFEYKENSSFRVIIFNVSACETKYPL----------DAVHIIDSDDDIIDITGKEFVGTQGTRKNNQSVNGGDTEHK 171          
BLAST of DY258072 vs. ExPASy Swiss-Prot
Match: Y4158_ARATH (B3 domain-containing protein At4g01580 OS=Arabidopsis thaliana GN=At4g01580 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 4.179e-16
Identity = 42/102 (41.18%), Postives = 65/102 (63.73%), Query Frame = 1
Query:  181 RFFRVILPSILEQKKLKIPKAFVGRFGYEELSSDATLKTPNGCVWQVGVTKDKGKIWLDDGWHHFVKDHSICVAYFLVFKYAKNSTFDVLIFDMTACEIDYP 486
            +FF+++LPS ++ K ++IP  FV   G  +LS   TL TP G    + + +   +IW  +GW  F + HSI   +FL+F+Y KNS+F V+IF+ +ACE +YP
Sbjct:   29 KFFKLVLPSTMKDKMMRIPPRFVKLQG-SKLSEVVTLVTPAGYKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEGHFLLFEYKKNSSFRVIIFNASACETNYP 129          
BLAST of DY258072 vs. ExPASy Swiss-Prot
Match: Y1475_ARATH (B3 domain-containing protein At1g49475 OS=Arabidopsis thaliana GN=At1g49475 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 2.074e-15
Identity = 45/122 (36.89%), Postives = 73/122 (59.84%), Query Frame = 1
Query:  181 RFFRVILPSILEQKKLKIPKAFVGRFGYEELSSDATLKTPNGCVWQVGVTKDKGKIWLDDGWHHFVKDHSICVAYFLVFKYAKNSTFDVLIFDMTACEIDYPYHRGQPNKEEQNSIHDDEMQ 546
            +F ++IL S + +K +K+P  FV RFG  +L+ + TL+TP G    + + +   ++W + GW  F + HS+   +FL F Y  +S F V+IFD++A EI+YP      N+EE   + DD+ Q
Sbjct:   33 KFIKIILLSRIIEKMMKVPARFV-RFG-PKLTDNVTLQTPVGFKRSIRIKRIGDEVWFEKGWSEFAEAHSLSDGHFLFFHYEGDSCFRVVIFDVSASEIEYPLDDTDDNREE---VMDDDEQ 149          
BLAST of DY258072 vs. ExPASy Swiss-Prot
Match: Y3123_ORYSJ (B3 domain-containing protein Os03g0212300 OS=Oryza sativa subsp. japonica GN=Os03g0212300 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.017e-11
Identity = 44/118 (37.29%), Postives = 57/118 (48.31%), Query Frame = 1
Query:  148 KMAGNRATEPFRFFRVILPSILEQKKLKIPKAFVGRFGYEELSSDATLKTPNGC-VWQVGVTKD--KGKIWLDDGWHHFVKDHSICVAYFLVFKYAKNSTFDVLIFDMTACEIDYPYH 492
            +MA  R T+ F FFR+ILP    + KLK+P  F    G  EL          G   W V V  D   G ++L  GW  F + H +   +FLVF+Y   + F V +FD T C  DY  H
Sbjct:    4 QMANLRLTD-FEFFRIILPGS-SKTKLKLPYKFARELGDRELREARLRVAGEGRRPWDVKVFDDDVSGDVYLGRGWQEFARAHDLRDGHFLVFRYDGAAAFTVTVFDETMCRRDYRRH 119          
The following BLAST results are available for this feature:
BLAST of DY258072 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
VRN1_ARATH1.483e-2129.12B3 domain-containing transcription factor VRN1 OS=... [more]
Y3896_ARATH1.876e-1632.47B3 domain-containing protein At3g18960 OS=Arabidop... [more]
Y4158_ARATH4.179e-1641.18B3 domain-containing protein At4g01580 OS=Arabidop... [more]
Y1475_ARATH2.074e-1536.89B3 domain-containing protein At1g49475 OS=Arabidop... [more]
Y3123_ORYSJ9.017e-1137.29B3 domain-containing protein Os03g0212300 OS=Oryza... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB2DE11ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258072 ID=DY258072; Name=DY258072; organism=Citrus clementina; type=EST; length=1243bp
GGAAAAAAGACAGAGGGTCACGTCACATGTCATGGCAGCATGAACAGAGT
TTCTGAATGTTAGACTTGAACAGTTGAATATATCACGGCAAAAAGCAAAA
TGAGCAAAAGACATGTGGGATTTTCTCGCCGTTGTATGGTGATGAAGAAA
ATGGCTGGCAACAGAGCAACGGAACCCTTTCGTTTCTTCAGAGTCATTCT
TCCGAGCATCCTTGAACAGAAGAAGCTGAAAATCCCGAAAGCGTTTGTCG
GGAGATTTGGGTATGAAGAACTTTCCTCTGATGCTACTCTCAAGACTCCG
AACGGATGTGTTTGGCAAGTGGGGGTGACAAAAGACAAGGGAAAGATTTG
GCTCGATGATGGATGGCATCATTTTGTCAAAGATCATTCTATTTGTGTTG
CATATTTTTTGGTATTCAAATATGCCAAGAATTCAACCTTTGATGTTCTT
ATTTTTGATATGACTGCTTGCGAGATTGACTATCCTTATCATCGCGGACA
ACCAAACAAGGAGGAGCAGAATTCAATCCATGACGACGAAATGCAATGTG
AAAACTCAACTAAGAAACTAGGTTTCAGAGCTTCATGCAAAAATCAAATG
CACCATTCACAAGGATCTTTGCACTACAAAAGGCTGTTGAATGGAACTGC
TGGGAATTTTAGTCGTCCAAGCTCAGCAGTTCAAGATGATCACCAAACAG
AATTTGTAGACGGACAAGCATTGTCGGCTTTGCTTGAAGAAATGGGGATC
TCTATCAGTCGATCATGTCTGTCTCTTGAAGCGGAAGAAAGACACAGAGT
AATCACTGCAGCCAGATTGTTCGAGCCTAGAAATCCTTCATTCATGGTTA
TTGTGCGGGGAAATGAAAGACGTAAAGCCTATCTGTTTATCCCAATCAAG
TTTGTTAACAATTATTTGTGTGAAGTTCCCAAATTTATCAAAGTACAGGC
TTGACGGAAGAGAGTGGGTCATACAAACCCAGGTACCGTCACACCCGGGG
CTTCTTTATTTACCAGGGGGGATGGCCTGGAATTTGTTGGTTGACCTGAA
TTTTGGAAAAAAGGAAAAATATTTGCATTCTTTTTAATTTGAATCAAGAA
GGGGAAGAAGGCTTTTTAGGAAAAGTTTCCCTTTTTTTTAATGGCCCTTC
CTAAAAAAAGGGGAAAGGGGAAAAAAGCTTTGTGTTAAGAAAATTTTTCA
CAACCTCCAAAAAAAAAGTGTTTTCCCCAAAATTTTTTTTTTT
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