DY258093

Overview
NameDY258093
Unique NameDY258093
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length901
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9930 contig Ccv1_Contig9930:4..904. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258093 vs. ExPASy Swiss-Prot
Match: ATL4E_ARATH (RING-H2 finger protein ATL4E OS=Arabidopsis thaliana GN=ATL4E PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.021e-24
Identity = 56/121 (46.28%), Postives = 77/121 (63.64%), Query Frame = 3
Query:    3 DTQCSLCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAPAKASSELSDIQQETIQESSVTENADGASDQQRSEAYEEPQAVKHS---ESRNEDGTTLQNSPKEQGRSS 356
            D+QCS+CL DYQAE+KLQQ+P+CGH FHM+CID WLT+HTTCPLCRLSL+   K S +LS    E +   S  EN++G     + ++    +A+ H+   E  N D   +    +E  R+S
Sbjct:  108 DSQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPLCRLSLI--PKPSLDLSHQSTEIV---SSIENSNGGEASTQPDSQSATEAISHTDDVEEGNRDSQEVSKETEENDRNS 223          
BLAST of DY258093 vs. ExPASy Swiss-Prot
Match: ATL4F_ARATH (RING-H2 finger protein ATL4F OS=Arabidopsis thaliana GN=ATL4F PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.448e-24
Identity = 54/121 (44.63%), Postives = 74/121 (61.16%), Query Frame = 3
Query:    3 DTQCSLCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAPAKASSELSDIQQETIQESSVTENADGASDQQRSEAYEEPQAVKH---SESRNEDGTTLQNSPKEQGRSS 356
            DTQCS+CL DYQAE+KLQQ+P+CGH FHM+CID WLT+HTTCPLCRLSL+          D+  ++I+  S  EN +G     + ++    +A+ H    E  N D   +    +E  R+S
Sbjct:   94 DTQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPLCRLSLIPKPSV-----DLSHQSIEIVSSIENTNGGEASTQPDSQSATEAIIHIDDVEEGNRDSIEVVKESEENDRNS 209          
BLAST of DY258093 vs. ExPASy Swiss-Prot
Match: ATL1G_ARATH (RING-H2 finger protein ATL1G OS=Arabidopsis thaliana GN=ATL1G PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.945e-20
Identity = 54/140 (38.57%), Postives = 74/140 (52.86%), Query Frame = 3
Query:    3 DTQCSLCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAPAKASSELSDIQQETIQESSVTENADGASDQQRSEAYEEPQAVKHSESRNEDGTTLQNSPKEQGRSSH-SLDHEREVRDTTNETGEHEQ 419
            D+QCS+CL DYQ  DKLQQIP C H FHMDCID WLT+HTTCPLCRL+L+ P+++     D         S+    +  S Q  SE           ES   + + + + P+ Q   +H  +  + E +   +    HEQ
Sbjct:   97 DSQCSVCLGDYQPNDKLQQIPVCKHTFHMDCIDLWLTSHTTCPLCRLALI-PSRSRQSQDD------PVPSLVSPDEEVSSQPESEPVNHRVVSTQPESEPVNHSGVSSQPESQPVVNHRGVSSQPESQPVNHINDGHEQ 229          
BLAST of DY258093 vs. ExPASy Swiss-Prot
Match: ATL4K_ARATH (RING-H2 finger protein ATL4K OS=Arabidopsis thaliana GN=ATL4K PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 8.512e-15
Identity = 38/80 (47.50%), Postives = 51/80 (63.75%), Query Frame = 3
Query:   12 CSLCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAPAKASSELSDIQQETIQESSVTENADGASDQQ 251
            C++CL +++ EDKL+ +P C HAFHMDCID WL +H+TCPLCR SLL      S+LS  Q        V E+A   S ++
Sbjct:  134 CAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWLLSHSTCPLCRSSLL------SDLSSHQDPRSSFLLVLESASDHSSRE 207          
BLAST of DY258093 vs. ExPASy Swiss-Prot
Match: ATL1P_ARATH (RING-H2 finger protein ATL1P OS=Arabidopsis thaliana GN=ATL1P PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.517e-14
Identity = 33/92 (35.87%), Postives = 55/92 (59.78%), Query Frame = 3
Query:    9 QCSLCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAPAKASSELSDIQQETIQESSVTENADGASDQQRSEAYEEPQAV 284
            +CS+CL++    DK + +P C H+FH++CID W  +H+TCP+CR ++L P +ASS+  +   +  + +  T N   A  Q  + + E P  V
Sbjct:  126 ECSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNTVLGPEQASSKRVEQVPDNAENAGTTNNNHDALSQLSTSSPEFPTNV 217          
BLAST of DY258093 vs. ExPASy Swiss-Prot
Match: ATL3A_ARATH (RING-H2 finger protein ATL3A OS=Arabidopsis thaliana GN=ATL3A PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.229e-13
Identity = 44/146 (30.14%), Postives = 73/146 (50.00%), Query Frame = 3
Query:    6 TQCSLCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAPAKASSELSDIQQETI----------QESSVTENADGASDQQRSEAYEEPQAVKHSESR-NEDGTTLQNSPKEQGRSSHSL-DHEREVRDTTNETG 407
            + CS+CL+++Q  + L+ +P C HAFH+ CID WL +H+ CPLCR  ++    ++ E+ D+  + I           +S V  N D  + + R+E   E    K  E + + DG   +++    G    S+ D  RE+ D     G
Sbjct:  157 SDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRAFIV--TSSAVEIVDLTNQQIVTENNSISTGDDSVVVVNLDLENSRSRNETVNEGSTPKPPEMQDSRDGEERRSASLNSGGGVVSIADILREIEDDEESAG 300          
BLAST of DY258093 vs. ExPASy Swiss-Prot
Match: ATL2C_ARATH (Putative RING-H2 finger protein ATL2C OS=Arabidopsis thaliana GN=ATL2C PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.229e-13
Identity = 66/230 (28.70%), Postives = 97/230 (42.17%), Query Frame = 3
Query:   12 CSLCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAPAKASSELS-------DIQQETIQESSVTE---------NADGASDQQRS-----------EAYEE---PQAVKHSESRNED----------GTTLQNSPKEQGRSSHSLDHEREVRDTTNETGEHEQSKKIPDLTLKSP*WIQTPSCIPFFAPALEQLEASVITKFRKISMSNICLTGKCE 581
            C +CL +++ EDKL+ +P C HAFH++CID WL +H+TCPLCR +LL+   +   LS       + +Q +     V E         N D  S + RS           +  +E   P  VK  + RN D           +   NS    GR   S+     + D       H  +KK+               C   F P ++ +E SV+ +    S+S I L GK E
Sbjct:  126 CPVCLCEFETEDKLRLLPKCSHAFHVECIDTWLLSHSTCPLCRSNLLSGFSSHHNLSSSYLLVLESEQSSRDMVPVLESNSQLGYDVNNDSESTRIRSGRKSCDPDGDMDGLDEKVVPLEVKLGKFRNIDHVGEGSDQKKNSISGNSKNVDGRRCLSMGSYEYIMDQEATLKVHVSTKKLSGKDRVPSHRTVMSEC--GFDPTVKGIEKSVVER-ESFSLSKIWLRGKKE 352          
BLAST of DY258093 vs. ExPASy Swiss-Prot
Match: ATL5E_ARATH (Putative RING-H2 finger protein ATL5E OS=Arabidopsis thaliana GN=ATL5E PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.671e-13
Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = 3
Query:   12 CSLCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAPAKASSELSDI 188
            CS+CL DY+A + ++ IP C H FH DC+D WL T  TCPLCR S  AP++ ++ LSD+
Sbjct:   94 CSICLCDYEAREPVRCIPECNHCFHTDCVDEWLRTSATCPLCRNS-PAPSRLATPLSDL 151          
BLAST of DY258093 vs. ExPASy Swiss-Prot
Match: ATL5I_ARATH (RING-H2 finger protein ATL5I OS=Arabidopsis thaliana GN=ATL5I PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.967e-13
Identity = 31/73 (42.47%), Postives = 47/73 (64.38%), Query Frame = 3
Query:   12 CSLCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAPA-KASSELSDIQQETIQESSVTEN 227
            C++CL ++  +DKL+ +P C HAFH++CID WL +++TCPLCR +L +P     + + D       E  VTEN
Sbjct:  143 CAVCLCEFSEKDKLRLLPMCSHAFHLNCIDTWLQSNSTCPLCRGTLFSPGFSMENPMFDFDDIREDEEGVTEN 215          
BLAST of DY258093 vs. ExPASy Swiss-Prot
Match: ATL5F_ARATH (RING-H2 finger protein ATL5F OS=Arabidopsis thaliana GN=ATL5F PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.318e-12
Identity = 31/84 (36.90%), Postives = 50/84 (59.52%), Query Frame = 3
Query:    6 TQCSLCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAPAKASSELSDIQQETIQESSVTENADGASDQQRS 257
            T+CS+CL +++ ++ L+ +P C HAFH++CID WL +H  CPLCR  +L   +   + ++   +   ESS   +  G  D  RS
Sbjct:  133 TECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVLLITEPPHQETETNHQPDSESS--NDLRGRQDSSRS 214          
The following BLAST results are available for this feature:
BLAST of DY258093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
ATL4E_ARATH2.021e-2446.28RING-H2 finger protein ATL4E OS=Arabidopsis thalia... [more]
ATL4F_ARATH3.448e-2444.63RING-H2 finger protein ATL4F OS=Arabidopsis thalia... [more]
ATL1G_ARATH3.945e-2038.57RING-H2 finger protein ATL1G OS=Arabidopsis thalia... [more]
ATL4K_ARATH8.512e-1547.50RING-H2 finger protein ATL4K OS=Arabidopsis thalia... [more]
ATL1P_ARATH5.517e-1435.87RING-H2 finger protein ATL1P OS=Arabidopsis thalia... [more]
ATL3A_ARATH1.229e-1330.14RING-H2 finger protein ATL3A OS=Arabidopsis thalia... [more]
ATL2C_ARATH1.229e-1328.70Putative RING-H2 finger protein ATL2C OS=Arabidops... [more]
ATL5E_ARATH4.671e-1352.54Putative RING-H2 finger protein ATL5E OS=Arabidops... [more]
ATL5I_ARATH7.967e-1342.47RING-H2 finger protein ATL5I OS=Arabidopsis thalia... [more]
ATL5F_ARATH2.318e-1236.90RING-H2 finger protein ATL5F OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DH12ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258093 ID=DY258093; Name=DY258093; organism=Citrus clementina; type=EST; length=901bp
GAGATACGCAATGCTCTTTATGCCTTGCCGACTACCAAGCTGAAGATAAG
CTTCAACAGATACCTGCATGTGGCCATGCATTTCACATGGATTGCATTGA
CCACTGGCTTACCACCCATACAACATGCCCACTCTGCCGCCTTTCTCTCC
TTGCTCCTGCTAAAGCTTCCAGTGAATTATCTGACATCCAACAAGAAACA
ATTCAAGAATCTTCTGTCACAGAAAATGCTGATGGTGCATCTGATCAACA
AAGGTCTGAGGCTTATGAAGAGCCACAGGCTGTAAAACATTCAGAGTCAA
GGAATGAAGATGGGACTACTCTCCAAAATAGTCCAAAAGAACAAGGAAGA
AGCTCTCATTCTCTTGATCATGAAAGGGAAGTTAGGGACACAACGAATGA
AACTGGAGAGCATGAGCAGAGCAAAAAAATCCCAGACTTGACACTGAAGT
CCCCATGATGGATCCAAACACCATCGTGCATACCATTCTTTGCCCCGGCA
CTGGAACAGCTTGAAGCTTCAGTAATAACAAAGTTTCGCAAGATTTCCAT
GTCTAATATTTGTTTAACTGGGAAATGTGAAATAAACATATCATCACCAT
GCAGCTGCTTCTTTTGCCTTTACCATCCACATGCGCAACTGCTGGAGAAA
TGAGTCAATGGCAAGGAGTTATGGATGAAAATTAGTGTCCAAAATTAAAA
GAAGATCCCAGATGAATGCTTAAATATGATTCTGGGTTACCAGTCTTCCT
TTAATTTAGCATAGTGAGTGACTTGTAGTGTTGTGTTAGTGGAACCTCTT
TTAGAGGCAGTAGGTGCATTCTACACTTCGTAATTTATATGTAACATGAG
CACTATACATAATTTAATGAAAGTATATACTGAACTTTCTTTTTAAAACT
C
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