DY258098

Overview
NameDY258098
Unique NameDY258098
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1343
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1044 contig Ccv1_Contig1044:1..1343. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258098 vs. ExPASy Swiss-Prot
Match: SERA_ARCFU (D-3-phosphoglycerate dehydrogenase OS=Archaeoglobus fulgidus GN=serA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.235e-21
Identity = 72/232 (31.03%), Postives = 117/232 (50.43%), Query Frame = 1
Query:  238 IANYHLCVVKTM-RLDSNVISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESG 915
            +  Y   VV++  ++D+ VI  A  +K+I + GVG++ +DINAAT+ GI V   PG   GN  S AE  I LML   RK  +   ++     E+KK     G  L GKT  ++G G +G E+AKR +   + ++A     +       ++  + VK    D L+             + +DV+   +   K+T G++ K     MK G ++VN ARGG++D  A+   +++G
Sbjct:   39 VPKYEAIVVRSQTKVDAEVIQAAKNLKIIGRAGVGVDNIDINAATQRGIVVVNAPG---GNTISTAEHAIALMLAAARKIPQADRSVKEGKWERKKF---MGIELRGKTAGVIGLGRVGFEVAKRCKALEMNVLAYDPFVSKE-----RAEQIGVKLVDFDTLL-------------ASSDVITVHVPRTKETIGLIGKGQFEKMKDGVIVVNAARGGIVDEAALYEAIKAG 246          

HSP 2 Score: 24.6386 bits (52), Expect = 1.235e-21
Identity = 11/39 (28.21%), Postives = 21/39 (53.85%), Query Frame = 2
Query:  935 IDVAWTDPFDPHDPILKFKNVLINLKVGSVTKHSYKSRG 1051
            +DV   +P  P +P+LK  NV+    + + T+ +  + G
Sbjct:  253 LDVYEKEPPSPDNPLLKLDNVVTTPHIAASTREAQLNVG 291          
BLAST of DY258098 vs. ExPASy Swiss-Prot
Match: SERA_BACSU (D-3-phosphoglycerate dehydrogenase OS=Bacillus subtilis GN=serA PE=3 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 1.263e-21
Identity = 72/252 (28.57%), Postives = 127/252 (50.40%), Query Frame = 1
Query:  190 PSIQVDVIPI-----SDAPDVIANYHLCVVKTM-RLDSNVISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG--VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHL 921
            P I+ D I I     +DA D +  +   +V++  ++  ++ ++   +K++ + GVG++ +DI+ AT+ G+ V   P    GN  S AE T  ++  L+R   +  ++++ ++       G  L GKT+ I+G G IG E+A+R R FG+ +         H      +   A K G+     +E             AD++     L K+T G++NK  ++  KKG  L+N ARGG++D  A+   LE+GH+
Sbjct:   17 PLIESDFIEIVQKNVADAEDELHTFDALLVRSATKVTEDLFNKMTSLKIVGRAGVGVDNIDIDEATKHGVIVINAPN---GNTISTAEHTFAMISSLMRHIPQANISVKSREWNRTAYVGSELYGKTLGIVGLGRIGSEIAQRARAFGMTV---------HVFDPFLTEERAKKIGVNSRTFEE---------VLESADIITVHTPLTKETKGLLNKETIAKTKKGVRLINCARGGIIDEAALLEALENGHV 247          
BLAST of DY258098 vs. ExPASy Swiss-Prot
Match: SERA_MYCLE (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium leprae GN=serA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.396e-20
Identity = 72/229 (31.44%), Postives = 116/229 (50.66%), Query Frame = 1
Query:  253 LCVVKTMRLDSNVISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQK--KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGRLG 933
            L V     +D+ V++ A ++K++ + GVGL+ VD++AAT  G+ V   P   T N  S AE  + L+L   R+  E   ++     K    +G  + GKTV ++G G IG  +A R+  FG  +IA     A       +++ L ++    DDL+             + AD +   L    +TAG+++K  L+  K G ++VN ARGGL+D  A+A  + SGH+   G
Sbjct:   47 LLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAP---TSNIHSAAEHALALLLAASRQIAEADASLRAHIWKRSSFSGTEIFGKTVGVVGLGRIGQLVAARIAAFGAHVIAYDPYVAP-----ARAAQLGIELMSFDDLL-------------ARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEVALADAVRSGHVRAAG 254          
BLAST of DY258098 vs. ExPASy Swiss-Prot
Match: GYAR_PYRAB (Glyoxylate reductase OS=Pyrococcus abyssi GN=gyaR PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.062e-20
Identity = 68/233 (29.18%), Postives = 116/233 (49.79%), Query Frame = 1
Query:  253 LCVVKTMRLDSNVISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP------TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGRLG 933
            L  + + R+D  V  RA +++++  + VG + +D+  AT+ GI V   PG +T   A  A   +      L K ++   + E KK GV        G  + GKT+ I+GFG IG  +AKR R F ++I+   R+     +       L  +   +D+L+ E             +D VV  + LNK+T  ++N+  L  MK+ ++L+N+ARG ++D +A+   L+ G +   G
Sbjct:   50 LVTMLSERIDREVFERAPRLRIVANYAVGYDNIDVEEATKRGIYVTNTPGVLTDATADLAFALLLATARHLVKGDKFTRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGFGRIGQAIAKRARGFDMRILYYSRTRKPEVE-----KELNAEFKPLDELLRE-------------SDFVVLAVPLNKETYHMINEERLKMMKRTAILINVARGKVIDTKALIKALKEGWIAGAG 264          
BLAST of DY258098 vs. ExPASy Swiss-Prot
Match: SERA_MYCTU (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium tuberculosis GN=serA PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.182e-19
Identity = 68/229 (29.69%), Postives = 117/229 (51.09%), Query Frame = 1
Query:  253 LCVVKTMRLDSNVISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQK--KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGRLG 933
            L V     +D+ V++ A ++K++ + GVGL+ VD++AAT  G+ V   P   T N  S AE  + L+L   R+      ++ +   K    +G  + GKTV ++G G IG  +A+R+  FG  ++A     +       +++ L ++   +DDL+             + AD +   L    +TAG+++K  L+  K G ++VN ARGGL+D  A+A  +  GH+   G
Sbjct:   47 LLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAP---TSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP-----ARAAQLGIELLSLDDLL-------------ARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAG 254          
BLAST of DY258098 vs. ExPASy Swiss-Prot
Match: SERA_MYCBO (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium bovis GN=serA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.182e-19
Identity = 68/229 (29.69%), Postives = 117/229 (51.09%), Query Frame = 1
Query:  253 LCVVKTMRLDSNVISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQK--KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGRLG 933
            L V     +D+ V++ A ++K++ + GVGL+ VD++AAT  G+ V   P   T N  S AE  + L+L   R+      ++ +   K    +G  + GKTV ++G G IG  +A+R+  FG  ++A     +       +++ L ++   +DDL+             + AD +   L    +TAG+++K  L+  K G ++VN ARGGL+D  A+A  +  GH+   G
Sbjct:   47 LLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAP---TSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP-----ARAAQLGIELLSLDDLL-------------ARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAG 254          
BLAST of DY258098 vs. ExPASy Swiss-Prot
Match: GYAR_PYRKO (Glyoxylate reductase OS=Pyrococcus kodakaraensis GN=gyaR PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.016e-19
Identity = 68/233 (29.18%), Postives = 115/233 (49.36%), Query Frame = 1
Query:  253 LCVVKTMRLDSNVISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP------TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGRLG 933
            L  + + R+DS V   A +++++  + VG + +D+  ATR GI V   P  +T   A  A   +      L + +    + E K+ G+        G  + GKT+ I+GFG IG  +A+R R FG++I+   RS    ++       L  +   ++DL+ E             +D VV  + L K+T  ++N+  L  MKK ++LVNIARG ++D +A+   L+ G +   G
Sbjct:   49 LVTMLSERIDSEVFDAAPRLRIVANYAVGYDNIDVEEATRRGIYVTNTPDVLTDATADFAWTLLLATARRLIEADHFTRSGEWKRRGIAWHPRWFLGYDVYGKTIGIVGFGRIGQAVARRARGFGMRILYYSRSRKPEAE-----KELGAEFRSLEDLLRE-------------SDFVVLAVPLTKETQYMINEERLRLMKKTAILVNIARGKVVDTKALMKALKEGWIAGAG 263          
BLAST of DY258098 vs. ExPASy Swiss-Prot
Match: FDH_NEUCR (Formate dehydrogenase OS=Neurospora crassa GN=fdh PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.866e-19
Identity = 74/227 (32.60%), Postives = 111/227 (48.90%), Query Frame = 1
Query:  277 LDSNVISRANQMKLIMQFGVGLEGVDINAA--TRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGET----LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHE--DIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGRLG 933
            L +  ++RA ++KL +  G+G + VD+NAA  T  GI VA + G    N  S AE  +  +L L+R        I++ +  V         L GK V  +G G IG  + +RL+PF  K +     +  +  +S +  A             E GC    D+ +  +  DVV     L+++T G+ NK  +S MKKGS LVN ARG ++  E +A  L+SGHL   G
Sbjct:   75 LTAERLARAKKLKLAVTAGIGSDHVDLNAANKTNGGITVAEVTGS---NVVSVAEHVLMTILVLVRNFVPAHEQIQEGRWDVAEAAKNEFDLEGKVVGTVGVGRIGERVLRRLKPFDCKELL----YYDYQPLSAEKEA-------------EIGCRRVADLEEMLAQCDVVTINCPLHEKTQGLFNKELISKMKKGSWLVNTARGAIVVKEDVAEALKSGHLRGYG 281          
BLAST of DY258098 vs. ExPASy Swiss-Prot
Match: GYAR_THEPD (Glyoxylate reductase OS=Thermofilum pendens (strain Hrk 5) GN=gyaR PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.001e-18
Identity = 71/229 (31.00%), Postives = 111/229 (48.47%), Query Frame = 1
Query:  253 LCVVKTMRLDSNVISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP------TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA--TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESG 915
            LC++ T ++D+ V+  A  +K+I  + VG + +DI  AT+ GI V   PG +T    + AE T+ L+L + R+  E    I   +   P      TG  L GKT+ ++G G IGV  AKRL  F VKI+    +R W   + +                         D+      +D+V   + L K+T  ++N+  L  MKK + L+N ARG ++D EA+   L+ G
Sbjct:   52 LCLL-TDKIDAEVMDAAPNLKVISTYSVGFDHIDIPEATKRGIYVTHTPGVLTD---AVAEFTVGLILAVTRRIVEADKIIRTGQWDKPWNPYFLTGPELKGKTIGLVGLGRIGVATAKRLSSFDVKILYYDIERRWDVETVIPNMEFT-------------------DLDTLLEKSDIVSIHVPLTKETYHLINEERLRKMKKTAYLINTARGPVVDTEALVKALKEG 257          
BLAST of DY258098 vs. ExPASy Swiss-Prot
Match: GYAR_THEON (Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1) GN=gyaR PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.307e-18
Identity = 64/233 (27.47%), Postives = 114/233 (48.93%), Query Frame = 1
Query:  253 LCVVKTMRLDSNVISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP------TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGRLG 933
            L  + + R+D+ V   A ++K++  + VG + +DI  AT+ G+ +   P  +T   A  A + +      L + ++   + E KK GV        G  + G+T+ I+GFG IG  +A+R + FG++I+   R+     +    +  +      +D+L+ E             +D VV  + L K+T  ++N+  L  MK  ++LVNIARG ++D EA+   L  G +   G
Sbjct:   49 LVTMLSERIDAEVFDAAPRLKIVANYAVGYDNIDIEEATKMGVYITNTPDVLTNATADMAWVLLLATARRLIEADKFVRSGEWKKRGVAWHPLMFLGYDVYGRTIGIVGFGRIGQAIARRAKGFGMRILYNSRTRKPEVEKELGAEFMP-----LDELLKE-------------SDFVVLVVPLTKETYHMINEERLKLMKPTAILVNIARGKVVDTEALVKALREGWIAGAG 263          
The following BLAST results are available for this feature:
BLAST of DY258098 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
SERA_ARCFU1.235e-2131.03D-3-phosphoglycerate dehydrogenase OS=Archaeoglobu... [more]
SERA_BACSU1.263e-2128.57D-3-phosphoglycerate dehydrogenase OS=Bacillus sub... [more]
SERA_MYCLE1.396e-2031.44D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
GYAR_PYRAB4.062e-2029.18Glyoxylate reductase OS=Pyrococcus abyssi GN=gyaR ... [more]
SERA_MYCTU1.182e-1929.69D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
SERA_MYCBO1.182e-1929.69D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
GYAR_PYRKO2.016e-1929.18Glyoxylate reductase OS=Pyrococcus kodakaraensis G... [more]
FDH_NEUCR5.866e-1932.60Formate dehydrogenase OS=Neurospora crassa GN=fdh ... [more]
GYAR_THEPD1.001e-1831.00Glyoxylate reductase OS=Thermofilum pendens (strai... [more]
GYAR_THEON1.307e-1827.47Glyoxylate reductase OS=Thermococcus onnurineus (s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3AA08ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258098 ID=DY258098; Name=DY258098; organism=Citrus clementina; type=EST; length=1343bp
GGGAAAAGGCCTCTGGATTTATTCAATATCTGCAGTCTCTTCAGTTCACA
AGGGTAACTGGGCGGATTTGATATAAGCAAAATGGAGGGAATGGCTAGGA
GCAGTGATAAAAACATCACCCGTGTTCTCTTTTGCGGTCCACATTTCCCT
GCTTCCCATAATTATACTAAAGAATACTTGCAAAATTACCCTTCCATTCA
GGTTGATGTGATCCCCATTAGTGATGCGCCTGATGTCATAGCAAACTACC
ATCTTTGTGTGGTAAAAACCATGCGGCTAGATTCAAATGTTATATCTCGT
GCGAATCAAATGAAGCTTATAATGCAGTTTGGGGTTGGCCTGGAAGGTGT
GGATATTAATGCTGCTACAAGATGCGGCATCAAAGTTGCTAGAATCCCAG
GTGACGTGACTGGAAATGCTGCATCGTGTGCTGAATTGACCATATATCTA
ATGCTGGGCCTTCTCAGAAAGCAGAATGAGATGAGAATGGCCATAGAGCA
AAAAAAACTTGGAGTGCCAACTGGTGAGACACTACTTGGGAAAACTGTAT
TTATCTTGGGCTTTGGAAATATTGGGGTTGAATTGGCAAAGCGCTTGCGA
CCATTTGGTGTGAAAATTATTGCCACAAAAAGGAGTTGGGCTTCTCATTC
TCAAGTTTCTTGCCAATCTAGTGCACTTGCAGTAAAAAACGGGATCATTG
ATGATTTGGTTGATGAGAAGGGTTGTCATGAAGATATTTTTAAGTTTGCT
AGCATGGCCGACGTGGTTGTTTGTTGCCTGAGTTTAAATAAGCAGACGGC
TGGCATTGTAAACAAGTCATTTCTATCTTCAATGAAAAAGGGTTCTCTTC
TGGTGAATATTGCTCGAGGAGGTCTTTTAGACTATGAGGCCATTGCTCAT
TACCTCGAATCTGGCCACTTGGGGAGGCTGGGGCATTGATGTTGCTTGGA
CAGACCCCTTTGATCCCCATGACCCCATTCTAAAGTTCAAGAATGTTTTA
ATCAACCTCAAGGTTGGAAGTGTTACCAAACATTCTTACAAATCAAGGGG
CTAAGGTTGGTTGGCCAACGTTGCCCCTCAACTTTCAGGCGGGGGACTCC
TTTGAAAAGGAACTAAAATTTGGGGAATTGAATCCACCCTTCAAAGGAAC
TCTGTTTCCATCCGGCCCAAACCTTAATAAGGCCTGGCTTTCCCTTTTTT
AACAAATCTTTTTCCCGGGGCATTTTTTGAAAAAAAAACCCCCCATTTTT
GTCTGGTTTTTTTAAAAATTTGGAAACCATATTTAACACCAACAAAAATA
TTCTCTTTAATACAACCCTCTCCTATATTGTTTTTTGTTTTTT
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