DY258162

Overview
NameDY258162
Unique NameDY258162
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length960
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1052 contig Ccv1_Contig1052:1..960. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258162 vs. ExPASy Swiss-Prot
Match: NOC2L_ORYSJ (Nucleolar complex protein 2 homolog OS=Oryza sativa subsp. japonica GN=Os10g0495500 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.539e-25
Identity = 64/162 (39.51%), Postives = 104/162 (64.20%), Query Frame = 2
Query:    2 GIFIPVTSLVLDVLEYKVSKEVGKP---GKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQQSVEAFLQLEKCSGNTPFTQYYRSVMEKAASR 478
            G FIPV+SL+LD+LE K  +  GKP   GK  N  S  ++ K  +K+R F+E C+FSA++ L+ H AQWSY I+F E++ + L+ L+ F +    +  RR +K  I  ++ + EFV  KR  + FSPND  +V++FLQ+EK + ++P ++Y  ++ +++  R
Sbjct:  440 GTFIPVSSLLLDMLEMK--ELGGKPDAVGKAVNLFSVKQVDKKTVKTRAFQEACIFSAVDELAKHLAQWSYSIAFFEMSFLTLVRLQNFCKTVKADRFRREIKDLIHQIKASAEFVSSKRAGIGFSPND-PAVDSFLQVEKEAKSSPLSKYVATLHQRSQDR 598          
BLAST of DY258162 vs. ExPASy Swiss-Prot
Match: NOC2L_ARATH (Nucleolar complex protein 2 homolog OS=Arabidopsis thaliana GN=At2g18220 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.624e-25
Identity = 64/162 (39.51%), Postives = 97/162 (59.88%), Query Frame = 2
Query:    2 GIFIPVTSLVLDVLEYKVSKE--VGKPGKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQQSVEAFLQLEKCSGNTPFTQYYRSVMEKAASRS 481
            G FIPV+ L++D+LE K       G  GK  +  + +K+ K  +K+R F+E CV++ +E L  H +QWS  ++F EL+ IP I LR F + +  E  R+ +K+ I  +E N EFV KKR  + F PND  + E+FL+ EK +G TP  QY   + ++A  R+
Sbjct:  467 GTFIPVSMLLVDMLEMKELNRPPTGGVGKGVDLRTLLKVSKPAVKTRAFQEACVYTVVEELVEHLSQWSCSVAFFELSFIPTIRLRSFCKSTKAERFRKEMKQLISQIEANSEFVNKKRALIKFLPND-LAAESFLEDEKKAGKTPLLQYAEIIRQRAQQRN 627          
BLAST of DY258162 vs. ExPASy Swiss-Prot
Match: NOC2_YEAST (Nucleolar complex protein 2 OS=Saccharomyces cerevisiae GN=NOC2 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.144e-12
Identity = 44/169 (26.04%), Postives = 85/169 (50.30%), Query Frame = 2
Query:    2 GIFIPVTSLVLDVLEYKVSKEVGKPGKD---FNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQQSVEAFLQLEKCSGNTPFTQYYRSVMEKAASRSLIMNEN 499
            G+FIP+  L+ ++L      +  K   +   F+F   +K  + +L ++ ++E      ++LL  +FA +  +I+FPEL T  +I LR++ + S    L + +   ++ + QN  F+++KR +V F P ++  V  FL  +     TP   Y     E    ++ +M E+
Sbjct:  510 GVFIPIYPLLSEILTSTAFTKAPKKSPNLAAFDFEHNIKCTQAYLNTKIYQEGLSEQFVDLLGDYFALYCKNIAFPELVTPVIISLRRYIKTSTNVKLNKRLSTVVEKLNQNSTFIQEKRSDVEFGPTNKSEVSRFLN-DVAWNKTPLGSYVAVQREVKEEKARLMRES 677          
BLAST of DY258162 vs. ExPASy Swiss-Prot
Match: YKY4_SCHPO (Uncharacterized NOC2 family protein C1142.04 OS=Schizosaccharomyces pombe GN=SPAC1142.04 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.682e-12
Identity = 38/137 (27.74%), Postives = 75/137 (54.74%), Query Frame = 2
Query:    2 GIFIPVTSLVLDVLE--YKVSKEVGKPGKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQQSVEAFLQ 406
            G+FIP+   + +VL+  Y   K      K  +F   ++    +L+++ +++  +   +ELLS ++  ++  ISFPEL    ++  ++F ++S    L R +   ++ +EQ  +F+ +KR++  F+P D  SVE F Q
Sbjct:  502 GVFIPLAPSLFEVLDSSYVSRKAKASTLKPLDFDVELRASSSYLRTKVYQDGLIDQLLELLSEYYVLYATDISFPELVIPAIVRSKRFAKRSKNAKLNRGLLTLVNRLEQQSKFMTEKRNQQKFAPIDSDSVEQFAQ 638          
BLAST of DY258162 vs. ExPASy Swiss-Prot
Match: NOC2L_HUMAN (Nucleolar complex protein 2 homolog OS=Homo sapiens GN=NOC2L PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 2.817e-11
Identity = 46/153 (30.07%), Postives = 79/153 (51.63%), Query Frame = 2
Query:    2 GIFIPVTSLVLDVLEYKVSKEVGKPG----KDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQQSVEAFLQLEKCSGNTPFTQYY 448
            G FIPV   +L++ +        KPG    K  NFS  +KL    L+ + +R+  V    +L   +    ++ I FPEL    ++ L+ F  +  V +  R V++ +  V++N  ++  +R  V+F  ++QQ+VEA+ +L +  G TP T YY
Sbjct:  470 GAFIPVLPFILEMFQQVDFNR--KPGRMSSKPINFSVILKLSNVNLQEKAYRDGLVEQLYDLTLEYLHSQAHCIGFPELVLPVVLQLKSFLRECKVANYCRQVQQLLGKVQENSAYICSRRQRVSFGVSEQQAVEAWEKLTREEG-TPLTLYY 619          
The following BLAST results are available for this feature:
BLAST of DY258162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
NOC2L_ORYSJ1.539e-2539.51Nucleolar complex protein 2 homolog OS=Oryza sativ... [more]
NOC2L_ARATH2.624e-2539.51Nucleolar complex protein 2 homolog OS=Arabidopsis... [more]
NOC2_YEAST1.144e-1226.04Nucleolar complex protein 2 OS=Saccharomyces cerev... [more]
YKY4_SCHPO9.682e-1227.74Uncharacterized NOC2 family protein C1142.04 OS=Sc... [more]
NOC2L_HUMAN2.817e-1130.07Nucleolar complex protein 2 homolog OS=Homo sapien... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB3BD10ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258162 ID=DY258162; Name=DY258162; organism=Citrus clementina; type=EST; length=960bp
GGGGATTTTCATCCCCGTCACATCATTAGTGTTGGATGTTTTGGAATATA
AAGTAAGCAAAGAGGTTGGGAAGCCCGGGAAGGACTTTAACTTTTCTTCT
GCAGTAAAGTTACCAAAACATTGGCTGAAATCCCGGAACTTCCGAGAGGA
TTGTGTTTTTTCTGCCATTGAACTGCTCAGTGCACACTTCGCTCAGTGGA
GCTACCACATATCTTTTCCTGAACTGGCAACTATTCCTCTTATCCATCTT
AGGAAGTTTCAAGAGAAATCTGACGTTGAAAGTTTGCGGCGAGTGGTGAA
ACGTTTTATTGATGTGGTTGAGCAGAACATTGAGTTTGTGAAAAAGAAGA
GAGATGAAGTGGCCTTTTCCCCAAATGACCAGCAATCAGTTGAAGCGTTT
CTTCAGCTCGAGAAGTGTAGTGGCAACACTCCATTTACACAATACTACAG
GAGTGTCATGGAAAAGGCAGCTTCTAGGAGTCTGATTATGAATGAGAATA
AAAGTTTCCTTGAGCAGAAGAAACAAAAAAAGAAAAAGGGGACAAAACAT
AGTCGATGTGCGTGCTAACGGTGAAAAAGTACCAGAAAAAAGCAAAGTAG
ACCAGGCTGTATCTGTCAACGATGGAAAGTGAGACAGAAGTACAAGCACA
GAGTGAAACACTTGAAGACAATGAAGAGTAACCTTCTCTTATCTCCTAAT
TTTGATGCCACATGAGGTTAAGATGCTTTCTTAAGTTATTGATTTCTTAT
AAAATTACATTGTATGATACACATGTTCTCCCTTGGAAGTATTCTTGTAA
ATCAGGGATCCAAGAGCCGCTGTTGTTTGGATAAGCACAAGTCAGTTCTA
AGGTATAGGCTAAAGCAAATTTTGTCTCTGATATGAGAAAAGGAAATCAA
GATTCTGACATGTTTTGTAACTTTTACTCCACGTGCATATCGTTGCAAAA
CTTCTTCATT
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