DY258167

Overview
NameDY258167
Unique NameDY258167
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length838
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258167_ssr237 microsatellite DY258167_ssr237:237..248. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10024 contig Ccv1_Contig10024:4..841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258167 vs. ExPASy Swiss-Prot
Match: GBF1_ARATH (G-box-binding factor 1 OS=Arabidopsis thaliana GN=GBF1 PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 1.214e-36
Identity = 83/142 (58.45%), Postives = 97/142 (68.31%), Query Frame = 2
Query:  197 TNLNIGMDLWNTSPAAAGAAKMRTNXXXXXXXXXXXXIMPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLSSENNSIKEDLSRLCGPEAVANLEQSNPTQSSGEEEN 622
            TNLNIGMDLW++                               ++DERELKRQKRKQSNRESARRSRLRKQAECE+LQ RVE+LSNEN++LRDELQRLS EC+KL SENNSI+++L R+ G EAVANLEQ+      GE  N
Sbjct:  200 TNLNIGMDLWSSQAGVP--------------------------VKDERELKRQKRKQSNRESARRSRLRKQAECEQLQQRVESLSNENQSLRDELQRLSSECDKLKSENNSIQDELQRVLGAEAVANLEQNAAGSKDGEGTN 315          
BLAST of DY258167 vs. ExPASy Swiss-Prot
Match: CPRF3_PETCR (Light-inducible protein CPRF3 OS=Petroselinum crispum GN=CPRF3 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.538e-26
Identity = 61/102 (59.80%), Postives = 81/102 (79.41%), Query Frame = 2
Query:  308 IMPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLSSENNSIKEDLSRLCGPEAVANLEQSNPTQSSGE 613
            ++PDQ + DERELKRQ+RKQSNRESARRSRLRKQA+ +ELQ R++ LS ENR LR  LQR+SE C +++SEN+SIKE+L R  GP+ +  L + N  +++GE
Sbjct:  185 MLPDQRVNDERELKRQRRKQSNRESARRSRLRKQAKSDELQERLDNLSKENRILRKNLQRISEACAEVTSENHSIKEELLRNYGPDGLTRLPR-NLQEAAGE 285          
BLAST of DY258167 vs. ExPASy Swiss-Prot
Match: HBP1A_WHEAT (Transcription factor HBP-1a OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.627e-23
Identity = 68/148 (45.95%), Postives = 86/148 (58.11%), Query Frame = 2
Query:  194 ATNLNIGMDLWN---TSPAAAGAAKMRTNXXXXXXXXXXXXIMPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLSSENNSIKEDLSRL---CGPEAVANLEQSNPTQSSGEEE 619
            ATNLNIGMD W    +SP  A   K+ +                +QW  DERELK+QKRK SNRESARRSRLRKQAECEEL  R E L +EN +LR EL R+ +E E+L S+N S+K  L       G +AV ++ +   T     ++
Sbjct:  213 ATNLNIGMDYWGATGSSPVPAMRGKVPSGSARG-----------EQW--DERELKKQKRKLSNRESARRSRLRKQAECEELGQRAEALKSENSSLRIELDRIKKEYEELLSKNTSLKAKLGESGGGGGSDAVPDMNERGDTNGGSHQK 347          
BLAST of DY258167 vs. ExPASy Swiss-Prot
Match: TAF1_TOBAC (Transcriptional activator TAF-1 (Fragment) OS=Nicotiana tabacum GN=TAF1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.126e-19
Identity = 47/76 (61.84%), Postives = 59/76 (77.63%), Query Frame = 2
Query:  317 DQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLSSENNSIKEDL 544
            + W+Q+ERELKR+KRKQSNRESARRSRLRKQAE EEL  RV++L+ EN  L+ E+ +L E  EKL  EN ++ E L
Sbjct:  186 EAWLQNERELKREKRKQSNRESARRSRLRKQAEAEELAIRVQSLTAENMTLKSEINKLMENSEKLKLENAALMERL 261          
BLAST of DY258167 vs. ExPASy Swiss-Prot
Match: GBF3_ARATH (G-box-binding factor 3 OS=Arabidopsis thaliana GN=GBF3 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.142e-18
Identity = 46/79 (58.23%), Postives = 61/79 (77.22%), Query Frame = 2
Query:  308 IMPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLSSENNSIKEDL 544
            + P+ W+Q+ERELKR++RKQSNRESARRSRLRKQAE EEL  +VE L+ EN  LR EL +L+E+ +KL   N ++ + L
Sbjct:  248 VPPETWLQNERELKRERRKQSNRESARRSRLRKQAETEELARKVEALTAENMALRSELNQLNEKSDKLRGANATLLDKL 326          
BLAST of DY258167 vs. ExPASy Swiss-Prot
Match: EMBP1_WHEAT (DNA-binding protein EMBP-1 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.263e-17
Identity = 53/119 (44.54%), Postives = 69/119 (57.98%), Query Frame = 2
Query:  194 ATNLNIGMDLWNTSPAAA------GAAKMRTNXXXXXXXXXXXXIMPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLSSENNSI 532
            A NLNIGMD  + SP++        AA  ++N                    DERELKR++RKQSNRESARRSRLRKQ ECEEL  +V  L+  N  LR EL +L ++C+ + +EN  +
Sbjct:  209 APNLNIGMDPLSASPSSLVQGEVNAAASSQSNASLSQ--------------MDERELKRERRKQSNRESARRSRLRKQQECEELAQKVSELTAANGTLRSELDQLKKDCKTMETENKKL 313          
BLAST of DY258167 vs. ExPASy Swiss-Prot
Match: GBF2_ARATH (G-box-binding factor 2 OS=Arabidopsis thaliana GN=GBF2 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.184e-17
Identity = 50/122 (40.98%), Postives = 76/122 (62.30%), Query Frame = 2
Query:  311 MPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLSSENNSIKEDLSRLCGPEA---VANLEQSNPTQSSGEEENS*LEYTPRTTIITSS 667
            +P  W  +E+E+KR+KRKQSNRESARRSRLRKQAE E+L  +V+ L  EN +LR +L +L+ E EKL  EN +I + L      +    ++ ++++N    S   ++  L  +P T  + +S
Sbjct:  241 VPQPW--NEKEVKREKRKQSNRESARRSRLRKQAETEQLSVKVDALVAENMSLRSKLGQLNNESEKLRLENEAILDQLKAQATGKTENLISRVDKNNSVSGSKTVQHQLLNASPITDPVAAS 360          
BLAST of DY258167 vs. ExPASy Swiss-Prot
Match: CPRF1_PETCR (Common plant regulatory factor 1 OS=Petroselinum crispum GN=CPRF1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.184e-17
Identity = 43/78 (55.13%), Postives = 62/78 (79.49%), Query Frame = 2
Query:  308 IMP-DQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLSSENNSIKE 538
            +MP D W+ ++R+LKR++RKQSNRESARRSRLRKQAE EEL  +V++L+ EN  L+ E+ RL+   EKL+++N+ + E
Sbjct:  257 MMPNDSWLHNDRDLKRERRKQSNRESARRSRLRKQAEAEELAIKVDSLTAENMALKAEINRLTLTAEKLTNDNSRLLE 334          
The following BLAST results are available for this feature:
BLAST of DY258167 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
GBF1_ARATH1.214e-3658.45G-box-binding factor 1 OS=Arabidopsis thaliana GN=... [more]
CPRF3_PETCR2.538e-2659.80Light-inducible protein CPRF3 OS=Petroselinum cris... [more]
HBP1A_WHEAT2.627e-2345.95Transcription factor HBP-1a OS=Triticum aestivum P... [more]
TAF1_TOBAC5.126e-1961.84Transcriptional activator TAF-1 (Fragment) OS=Nico... [more]
GBF3_ARATH1.142e-1858.23G-box-binding factor 3 OS=Arabidopsis thaliana GN=... [more]
EMBP1_WHEAT1.263e-1744.54DNA-binding protein EMBP-1 OS=Triticum aestivum PE... [more]
GBF2_ARATH8.184e-1740.98G-box-binding factor 2 OS=Arabidopsis thaliana GN=... [more]
CPRF1_PETCR8.184e-1755.13Common plant regulatory factor 1 OS=Petroselinum c... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB3BE05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258167 ID=DY258167; Name=DY258167; organism=Citrus clementina; type=EST; length=838bp
GGAGTTTGCTAGGGGTAAGAAAGGAAGCTTTGACAAGATGCTTGCAGATG
GTATTTATCATTTCCATTTTGCAGTCAATTATTCGCAGTTATTATTATCT
AATCACAAAAGTTTCTCCACAGCCAACACGGAGAATAACACAGCGGAAGC
TGTTCCAGGATCAGTGCCCGGGAAGCCTGTAGTCTCAATGCCTGCAACTA
ATCTCAATATTGGCATGGATTTGTGGAATACATCCCCTGCTGCTGCTGGA
GCTGCAAAAATGAGAACAAATCCATCTGGGGCCTCACCAGCAGTTGCTCC
CGCTGGCATAATGCCCGATCAATGGATTCAAGATGAACGTGAATTGAAAA
GACAGAAAAGGAAGCAATCTAATAGGGAGTCAGCCAGAAGGTCAAGGTTA
CGCAAGCAGGCGGAATGTGAGGAGCTACAGGCCAGAGTGGAGACTTTGAG
CAATGAGAATCGCAACCTTAGAGATGAGTTACAGAGGCTTTCTGAGGAAT
GCGAGAAGCTTTCATCTGAAAATAATTCCATTAAGGAAGACTTATCTCGG
TTGTGTGGACCAGAGGCAGTTGCTAATCTTGAGCAGAGCAACCCCACTCA
GTCGTCCGGGGAAGAAGAAAATAGCTAATTGGAATACACACCTAGGACTA
CGATTATAACTTCCAGCTTGGACCACTAATTCTGGATGGCCGAGAATTTG
TGGCCTTGGCTTTAATGAGCATAGATTATTTATCCTTCTTACTAATCTAT
ACCTTTAACACAACAATGTTAACTGTAATGTTTATAATTCGTCCTTCGAT
TTGGATAGATGTATTGATTATTAATTCAAGTTGCTGAT
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