DY258168

Overview
NameDY258168
Unique NameDY258168
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length579
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258168_ssr553 microsatellite DY258168_ssr553:553..564. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9420 contig Ccv1_Contig9420:877..1455. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY258168 vs. ExPASy Swiss-Prot
Match: EP1G_DAUCA (Epidermis-specific secreted glycoprotein EP1 OS=Daucus carota GN=EP1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.525e-14
Identity = 40/93 (43.01%), Postives = 52/93 (55.91%), Query Frame = 1 
Query:    1 YYDKVDSQPTEETFTLFDR------------DSIWETECQLPERCGKFGLCDDNQCVACPTEKG-LLGWSKECAPTLVNFCRIAAFHYYKVEG 240
            Y DKVD    E T+TLF +                 +ECQLP++CG FGLC+++QCV CPT  G +L WSK C P  ++ C    FHY K+ G
Sbjct:  293 YNDKVDYGAWEVTYTLFLKAPPPLFQVSLAATESESSECQLPKKCGNFGLCEESQCVGCPTSSGPVLAWSKTCEPPKLSSCGPKDFHYNKLGG 385
The following BLAST results are available for this feature:
BLAST of DY258168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
EP1G_DAUCA2.525e-1443.01Epidermis-specific secreted glycoprotein EP1 OS=Da... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB3BE06ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258168 ID=DY258168; Name=DY258168; organism=Citrus clementina; type=EST; length=579bp
TATTACGACAAGGTTGATTCGCAGCCAACGGAAGAAACATTCACTCTCTT
TGATAGAGATTCAATTTGGGAAACTGAGTGTCAGCTTCCTGAGAGATGTG
GTAAATTTGGACTGTGTGATGACAATCAATGTGTTGCTTGTCCTACAGAG
AAGGGCTTGCTTGGCTGGAGTAAAGAGTGTGCACCGACGCTAGTGAATTT
TTGTCGGATAGCGGCTTTCCATTATTATAAAGTTGAAGGGGTTGATCATT
ATATTAGCAAATATAATAATGGAACTGGACCCATCAGAGTTGAAGATTGT
GGCAACAGATGTAGCACGGATTGTAGATGTGTGGGGTATTTTTACCATCA
GGAGACATCGAAATGTTGGATTGCTTTTGACTTGAAGACTCTTACCAAAT
TCCCCAACTCTACACATGTTGGATTCATCAAGGTTGCCCCGCAATTAAGT
ATCAAATAAGTGGATTAGATCTGTGATCGAAATAACAACAGATAGATATG
TGGGCTTTCAATGCCACCACAATAATAACTGTTGTTTGTCCATATATAAA
ATAATGAATGAATGAGTGAAATGTTTGTG
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