DY258196

Overview
NameDY258196
Unique NameDY258196
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1258
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10048 contig Ccv1_Contig10048:4..1261. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258196 vs. ExPASy Swiss-Prot
Match: APX4_SOLLC (Putative L-ascorbate peroxidase, chloroplastic OS=Solanum lycopersicum GN=CLEB3J9 PE=3 SV=1)

HSP 1 Score: 410.223 bits (1053), Expect = 1.285e-113
Identity = 219/346 (63.29%), Postives = 260/346 (75.14%), Query Frame = 1
Query:   25 SFLSTVPSMLPIVPSPSRNAFSTVATRCSAHAGAIRCHKIETQITVEDGFGRRDILKCIGATXXXXXXXXXXXXXX-ARAADLIQRKQRSEFISNIKETLQTALKGNPDLIPSLLTLALNDAMTYDKATKSGGPNGSIRFSSEISRPENKGLSAAMNLLEEAKKEIDSYSKGGPISFADLIQYAAQSAVKTTFLASAIRKCGGNEEKGRLLYTAYGSNGQWGLFEKQFGRTDAQEPDPEGRVPQWEKATVQEMKDKFSAIGFGPRQLAVMSAFLGPDQAATEALLGTDKDVSPWVQKYQRSKETVSQND*GGQSDNYLHEFK*PGPTNQLQGLPYPC*KIELGKLQ 1059
            SF ST+PS++  +PSPS     T A+R     G I C K  +++  ED F RRDIL+ +GA                A AADLIQR+QRS+F S IK TL  A+K NPD+IPSLLTLALNDA+TYDKATK+GGPNGSIRFSSEISRPENKGL AA+NLLEE+KK ID  SKGGPIS+ADLIQ+AAQSAVK+TF+ASAI KCGGN EKG LLY+AYGSNGQWG F++ FGR+DAQEPDPEGRVPQW+KA+VQEMKDKF A+G GPRQLAVMS+FLGPDQAATEALL +D +V PW+QKYQRS+ETVS+ D        + +    G     +   YP  KI++ KL+
Sbjct:    3 SFASTLPSLVSFIPSPSS---ITNASRNPPQPGMICC-KFRSELNNEDRFHRRDILQSVGAAVGMDLIARSSAFIEVANAADLIQRRQRSDFQSKIKLTLYDAIKANPDIIPSLLTLALNDAITYDKATKTGGPNGSIRFSSEISRPENKGLDAALNLLEESKKVIDLDSKGGPISYADLIQFAAQSAVKSTFIASAISKCGGNVEKGTLLYSAYGSNGQWGQFDRIFGRSDAQEPDPEGRVPQWDKASVQEMKDKFKAVGLGPRQLAVMSSFLGPDQAATEALLASDPEVLPWIQKYQRSRETVSRTDYEVDLITTVTKLSSLGQVINYEAYTYPPRKIDVTKLK 344          
BLAST of DY258196 vs. ExPASy Swiss-Prot
Match: APX4_ARATH (Probable L-ascorbate peroxidase 4, chloroplastic OS=Arabidopsis thaliana GN=APX4 PE=1 SV=2)

HSP 1 Score: 392.504 bits (1007), Expect = 2.772e-108
Identity = 214/350 (61.14%), Postives = 245/350 (70.00%), Query Frame = 1
Query:   19 GASFLSTVPSMLPIVPSPSRNAFSTVATRCSAHAGAIRCHKIETQITVED-GFGRRDILKCIGATXXXXXXXXXXXXXX--ARAADLIQRKQRSEFISNIKETLQTALKGNPDLIPSLLTLALNDAMTYDKATKSGGPNGSIRFSSEISRPENKGLSAAMNLLEEAKKEIDSYSKGGPISFADLIQYAAQSAVKTTFLASAIRKCGGNEEKGRLLYTAYGSNGQWGLFEKQFGRTDAQEPDPEGRVPQWEKATVQEMKDKFSAIGFGPRQLAVMSAFLGPDQAATEALLGTDKDVSPWVQKYQRSKETVSQND*GGQSDNYLHEFK*PGPTNQLQGLPYPC*KIELGKLQ 1059
            G SFLSTVPS      + + +   T  +  S  +  IRC KIE Q++ E   F RRD+LK  G                  A+AADL QR+QRSEF S IK  L T +K  P+L+PSLL LALNDAMTYDKATKSGG NGSIRFSSE+SR EN+GLS  ++L+EE KKEIDS SKGGPIS+AD+IQ A QSAVK T+LASAIRKCGGNEEKG LLYTAYGS GQWGLF++ FGR+DA E DPEGRVPQW KATVQEMKDKF A+G GPRQLAVMSAFLGPDQAATE LL TD  V+PWVQKYQRS+ETVSQ D          +    G     +   YP  +I L KL+
Sbjct:    3 GVSFLSTVPSFT----NTTNHQHLTTLSSSSHRSAVIRCSKIEPQVSGESLAFHRRDVLKLAGTAVGMELIGNGFINNVGDAKAADLNQRRQRSEFQSKIKILLSTTIKAKPELVPSLLKLALNDAMTYDKATKSGGANGSIRFSSELSRAENEGLSDGLSLIEEVKKEIDSISKGGPISYADIIQLAGQSAVKFTYLASAIRKCGGNEEKGNLLYTAYGSAGQWGLFDRNFGRSDATEADPEGRVPQWGKATVQEMKDKFIAVGLGPRQLAVMSAFLGPDQAATEQLLATDPQVAPWVQKYQRSRETVSQTDYEVDLITAFTKLSCLGQQINFEAYTYPVERINLSKLK 348          
BLAST of DY258196 vs. ExPASy Swiss-Prot
Match: APX3_ORYSJ (Probable L-ascorbate peroxidase 3 OS=Oryza sativa subsp. japonica GN=APX3 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.744e-13
Identity = 56/169 (33.14%), Postives = 79/169 (46.75%), Query Frame = 1
Query:  328 ALKGNPDLIPSLLTLALNDAMTYDKATKSGGPNGSIRFSSEISRPENKGLSAAMNLLEEAKKEIDSYSKGGPISFADLIQYAAQSAVKTTFLASAIRKCGGNEEKGRLLYTAYGSNGQWGLFEKQFGRTDAQEPDPEGRVPQWEKATVQEMKDKFSAIGFGPRQLAVMS 834
            AL  +    P +L LA +DA TYDKATK+GGPNGSIRF  E S   N G+  A++LLE  K+      K   I++ADL Q A   AV+ T         GG                     +   GR D+ +   EGR+P  +K     +++ F  +G   + +  +S
Sbjct:   24 ALIASKSCAPIMLRLAWHDAGTYDKATKTGGPNGSIRFPQEYSHAANAGIKIAIDLLEPMKQ------KHPKITYADLYQLAGVVAVEVT---------GG------------------PTIDYVPGRRDSSDSPEEGRLPDAKKGAA-HLREVFYRMGLSDKDIVALS 158          
BLAST of DY258196 vs. ExPASy Swiss-Prot
Match: APX3_ORYSI (Probable L-ascorbate peroxidase 3 OS=Oryza sativa subsp. indica GN=APX3 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.280e-12
Identity = 55/169 (32.54%), Postives = 79/169 (46.75%), Query Frame = 1
Query:  328 ALKGNPDLIPSLLTLALNDAMTYDKATKSGGPNGSIRFSSEISRPENKGLSAAMNLLEEAKKEIDSYSKGGPISFADLIQYAAQSAVKTTFLASAIRKCGGNEEKGRLLYTAYGSNGQWGLFEKQFGRTDAQEPDPEGRVPQWEKATVQEMKDKFSAIGFGPRQLAVMS 834
            AL  +    P +L LA +DA TYDKATK+GGPNGSIRF  E S   N G+  A++LLE  K+      +   I++ADL Q A   AV+ T         GG                     +   GR D+ +   EGR+P  +K     +++ F  +G   + +  +S
Sbjct:   24 ALIASKSCAPIMLRLAWHDAGTYDKATKTGGPNGSIRFPQEYSHAANAGIKIAIDLLEPMKQ------RHPKITYADLYQLAGVVAVEVT---------GG------------------PTIDYVPGRRDSSDSPEEGRLPDAKKGAA-HLREVFYRMGLSDKDIVALS 158          
BLAST of DY258196 vs. ExPASy Swiss-Prot
Match: APX5_ARATH (L-ascorbate peroxidase 5, peroxisomal OS=Arabidopsis thaliana GN=APX5 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 3.723e-12
Identity = 44/105 (41.90%), Postives = 62/105 (59.05%), Query Frame = 1
Query:  289 SEFISNIKETLQT--ALKGNPDLIPSLLTLALNDAMTYDKATKSGGPNGSIRFSSEISRPENKGLSAAMNLLEEAKKEIDSYSKGGPISFADLIQYAAQSAVKTT 597
            +E++  I++T +   AL  + +  P +L LA +DA TYD   K+GG NGSIRF  E++RP NKGL  A+   EE K      +K   +S+ADL Q A   AV+ T
Sbjct:    7 AEYLKEIEKTRRDLRALISSRNCAPIMLRLAWHDAGTYDAKKKTGGANGSIRFKEELNRPHNKGLEKAVAFCEEVK------AKHPRVSYADLYQLAGVVAVEVT 105          
BLAST of DY258196 vs. ExPASy Swiss-Prot
Match: APX6_ARATH (Putative L-ascorbate peroxidase 6 OS=Arabidopsis thaliana GN=APX6 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.464e-12
Identity = 50/158 (31.65%), Postives = 75/158 (47.47%), Query Frame = 1
Query:  361 LLTLALNDAMTYDKATKSGGPNGSIRFSSEISRPENKGLSAAMNLLEEAKKEIDSYSKGGPISFADLIQYAAQSAVKTTFLASAIRKCGGNEEKGRLLYTAYGSNGQWGLFEKQFGRTDAQEPDPEGRVPQWEKATVQEMKDKFSAIGFGPRQLAVMS 834
            +L L  +DA T++    SGG NGSI +  E+ RPEN GL  ++ +L +AK ++D      P+S+AD+I  A   AV           CGG                         GR D+ +PDPEG++P  E  +   +K+ F   GF  ++L  +S
Sbjct:  117 VLRLVFHDAGTFELDDHSGGINGSIAY--ELERPENIGLKKSLKVLAKAKVKVDEIQ---PVSWADMISVAGSEAVSI---------CGGPT------------------IPVVLGRLDSAQPDPEGKLPP-ETLSASGLKECFKRKGFSTQELVALS 241          

HSP 2 Score: 20.7866 bits (42), Expect = 8.464e-12
Identity = 9/22 (40.91%), Postives = 14/22 (63.64%), Query Frame = 2
Query:  296 LFPISRRLSKLLSREIQILSHL 361
            +F  SRR   +L   +Q+LSH+
Sbjct:   66 VFVASRRKMVVLLSTVQLLSHM 87          
The following BLAST results are available for this feature:
BLAST of DY258196 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
APX4_SOLLC1.285e-11363.29Putative L-ascorbate peroxidase, chloroplastic OS=... [more]
APX4_ARATH2.772e-10861.14Probable L-ascorbate peroxidase 4, chloroplastic O... [more]
APX3_ORYSJ5.744e-1333.14Probable L-ascorbate peroxidase 3 OS=Oryza sativa ... [more]
APX3_ORYSI1.280e-1232.54Probable L-ascorbate peroxidase 3 OS=Oryza sativa ... [more]
APX5_ARATH3.723e-1241.90L-ascorbate peroxidase 5, peroxisomal OS=Arabidops... [more]
APX6_ARATH8.464e-1231.65Putative L-ascorbate peroxidase 6 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB3CB05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258196 ID=DY258196; Name=DY258196; organism=Citrus clementina; type=EST; length=1258bp
GGAAGAAACAACATTATGGGCGCTTCTTTTCTCTCTACGGTTCCTTCTAT
GCTTCCCATTGTTCCTTCCCCATCGCGCAACGCTTTCTCTACTGTGGCCA
CCAGATGCTCCGCTCATGCTGGTGCTATACGTTGTCATAAAATTGAGACT
CAAATAACTGTTGAAGATGGTTTTGGTAGAAGGGATATTCTGAAATGCAT
TGGTGCGACCATTGGCATGGAAATAATATCAGGCTCAGGATCAATTGAAA
TGGCACGTGCTGCTGATTTGATACAACGCAAACAGCGTTCGGAGTTTATT
TCCAATATCAAGGAGACTCTCCAAACTGCTCTCAAGGGAAATCCAGATCT
TATCCCATCTCTACTAACTTTGGCACTCAATGATGCCATGACTTATGATA
AGGCTACAAAATCTGGAGGCCCTAATGGATCCATAAGGTTCAGCTCAGAG
ATAAGCAGACCAGAAAATAAGGGGCTTTCTGCTGCCATGAATTTGTTAGA
GGAAGCAAAGAAGGAGATAGATTCATATTCTAAAGGTGGACCAATATCCT
TTGCCGATCTCATCCAGTATGCAGCACAAAGTGCCGTTAAGACAACATTT
TTGGCATCAGCCATCCGCAAATGTGGAGGGAATGAAGAGAAAGGGCGCTT
ATTGTACACTGCATATGGCTCAAATGGTCAGTGGGGCCTGTTTGAAAAGC
AATTTGGAAGGACAGATGCTCAGGAGCCAGATCCAGAGGGAAGGGTTCCC
CAGTGGGAGAAAGCTACTGTCCAGGAAATGAAAGATAAATTCTCAGCAAT
TGGCTTTGGTCCCCGCCAGCTAGCTGTTATGTCTGCGTTCTTGGGTCCTG
ATCAGGCAGCAACAGAAGCCTTATTGGGCACCGATAAAGATGTTTCTCCT
TGGGTTCAGAAATACCAACGTAGCAAAGAAACAGTGTCTCAGAATGATTA
AGGAGGGCAATCTGATAACTACCTTCACGAATTTAAATAACCTGGGCCCA
CAAATCAATTACAAGGCTTACCATATCCCTGCTAAAAAATTGAATTGGGC
AAACTTCAATTTGAAAACGGGAAATGGAATGTGTTTCCAAAAACGGAATG
GGCCAGGAATTCCCCCCAAAAACTTTTTTGTAAAGCCAAACCTTTTCCCT
TTAAAATTTTTGGAAAATTTTTTGGAGGGAAATTTGAAGCCCCGCCGGGT
TCCTAACATATCAATTTTTAAAAAAGTGGCCCTAAAAAAAAAACCCCTCC
TTTTTTCT
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