DY258217

Overview
NameDY258217
Unique NameDY258217
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length592
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10364 contig Ccv1_Contig10364:424..1016. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY258217 vs. ExPASy Swiss-Prot
Match: PDIA6_MEDSA (Probable protein disulfide-isomerase A6 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.500e-17
Identity = 42/58 (72.41%), Postives = 51/58 (87.93%), Query Frame = 2 
Query:    2 GSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 175
            GS +R+GKIYLKV+K Y++KGSDYAK EI RL+R+L+KSIS AKADE  LKKNILST+
Sbjct:  306 GSASRYGKIYLKVSKKYLEKGSDYAKNEIQRLERLLEKSISPAKADELTLKKNILSTY 363
[Close]
BLAST of DY258217 vs. ExPASy Swiss-Prot
Match: PDIA6_ARATH (Probable protein disulfide-isomerase A6 OS=Arabidopsis thaliana GN=At2g47470 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.075e-15
Identity = 39/58 (67.24%), Postives = 49/58 (84.48%), Query Frame = 2 
Query:    2 GSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 175
            GST R+GK+YLK+AK+Y++KGSDYA KE +RL R+L KSIS  KADE  LK+NIL+TF
Sbjct:  300 GSTTRYGKLYLKLAKSYIEKGSDYASKETERLGRVLGKSISPVKADELTLKRNILTTF 357
The following BLAST results are available for this feature:
BLAST of DY258217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PDIA6_MEDSA1.500e-1772.41Probable protein disulfide-isomerase A6 OS=Medicag... [more]
PDIA6_ARATH1.075e-1567.24Probable protein disulfide-isomerase A6 OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB3CE09ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258217 ID=DY258217; Name=DY258217; organism=Citrus clementina; type=EST; length=592bp
GGGTTCCACTGCCAGGCATGGGAAGATTTACTTGAAAGTTGCAAAGAACT
ATATGGACAAAGGGAGTGATTATGCGAAGAAGGAAATTGATCGCCTCCAG
CGTATGCTTGACAAGTCAATCAGCGCGGCAAAAGCGGACGAATTCGTCCT
CAAGAAAAATATTTTATCCACATTCACTTAATATGTGGGATTATGTTTTT
TTATTCATCTCAAATTGGGCTGGGGTTACCTATAAGTCGACTTTATGGAG
ATTGATGGACCACAGCCATCTGATGTTGCTGTGAATTTATTTGAGCAGAG
CTTCTTTTAACGGGGAAAGATCTTGAGGTCTCAGACATAAATGACCACAT
ATGATGAAACTTGTGTTAAGAGAAGTACAATTAGGTAGTGTAATGATTTA
GATAAAACGTTCGTTCACAGTTACAATTTTGGGATGCTTTCTGGTTTCTA
AACGTTAATGTCGCCGCCGAGTTACTTATTTTGTTTCATTTAGGAACATG
GAAAAAAACTATAATTAGAAGTGACTCATATTTAGAGGCACTTAAAAACT
TACTGGGATTAACTTATATTAATTTTATTATGACAGTTTCGA
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