DY258223

Overview
NameDY258223
Unique NameDY258223
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length884
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig651 contig Ccv1_Contig651:191..1071. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258223 vs. ExPASy Swiss-Prot
Match: LEC1_MEDTR (Lectin 1 OS=Medicago truncatula GN=LEC1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.846e-12
Identity = 61/212 (28.77%), Postives = 98/212 (46.23%), Query Frame = 2
Query:    5 AMTTFYGYLFLTSDPSPQF*DHLPLKKVGRV*YSQPVTAWP------AMIKTTFTIRIS-PYSNTTDSADGMTFVFATNTTPPTDXXXXXXXXXXXXXXXX------TMELDPYKNDYWSDPDAN-HMGIDIANLTSNPSKSLNSSGIDLKSGRPIHVHIYYDGWTKILYVYVAYAGNPLQKLIERPILLSETIPSSVYVGFTASTGPDFSE 598
            A+TT  G L LT               +GR  YS P+  W       A  +T FT  I+ PYS+    ADG+ F  A   T P +                       +E+D + N +  DP  N H+GI++     N  KS++++   L++GR  +V + +D  T +L V ++Y G P   ++   + L + +P  V +GF+A+TG +F+E
Sbjct:   54 AITTSTGKLQLTKAVK---------NSIGRALYSAPIHIWDSKTGDVANFETLFTFAITAPYSSNV--ADGLAFFIAPVDTQPQNIGRAGFLGVFNSETYNKSIQTVAVEIDTFHNTW--DPKINRHIGINV-----NCIKSISTTSWVLENGREANVLVRFDAHTNVLSVVLSYPGLPDSYILSDVVPLKDIVPEWVRIGFSAATGAEFAE 247          
BLAST of DY258223 vs. ExPASy Swiss-Prot
Match: LECS_VATMA (Seed lectin OS=Vatairea macrocarpa PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.560e-12
Identity = 64/225 (28.44%), Postives = 99/225 (44.00%), Query Frame = 2
Query:    5 AMTTFYGYLFLTSDPSPQF*DHLPLKKVGRV*YSQPVTAWP------AMIKTTFTIRISPYSNTTDSADGMTFVFATNTTPPTDXXXXXXXXXXXXXXXXTM--ELDPYKNDYWSDPDANHMGIDIANLTSNPSKSLNSSGIDLKSGRPIHVHIYYDGWTKILYVYVAYAGNPLQKLIERPILLSETIPSSVYVGFTASTG--PDFSETHHVLDCTFT-TFPLPS 646
            A+ T  G L LT     +  DH     +GR  Y+ P+  W       A   T+F+  +    + + +ADG+ F  A   T P                  T+  E D + N +  DP A H+GI++     N  +S+       ++G+  +V+I Y+  TK L   + Y  N    ++   + L   +P  V VGF+A++G   D  ETH VLD +FT T   PS
Sbjct:   24 ALVTSKGKLQLTKVKDGKPVDH----SLGRALYAAPIHIWDDSTDRVASFATSFSFVVEA-PDESKTADGIAFFLAPPDTQPQKDGGFLGLFNDSNKSIQTVAVEFDTFSNTW--DPSARHIGINV-----NSIESMKYVKWGWENGKVANVYISYEASTKTLTASLTYPSNATSYIVSANVDLKSALPEWVRVGFSATSGLSRDHVETHDVLDWSFTSTLQAPS 236          
BLAST of DY258223 vs. ExPASy Swiss-Prot
Match: PHAE_PHAVU (Erythroagglutinating phytohemagglutinin OS=Phaseolus vulgaris GN=DLEC1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.119e-11
Identity = 60/210 (28.57%), Postives = 86/210 (40.95%), Query Frame = 2
Query:   77 LKKVGRV*YSQPVTAWP------AMIKTTFTIRISPYSNTTDSADGMTFVFATNTTPPTDXXXXXXXXXXXXXXXXT----MELDPYKNDYWSDPDANHMGIDIANLTSNPSKSLNSSGIDLKSGRPIHVHIYYDGWTKILYVYVAYAGNPLQKLIERPILLSETIPSSVYVGFTASTG--PDFSETHHVLDCTFTTFPLPSSSLEEQNL 670
            L  +GR  YS P+  W       A   T+FT  I    N +  ADG+ FV     + P D                     +E D   N +W DP   H+GID+     N  KS+ ++  D   G    V I YD  TK+L   + Y       ++   + L   +P  V VGFTA+TG      ET+ +L  +F +     ++ E  NL
Sbjct:   64 LSSLGRAFYSAPIQIWDNTTGAVAASPTSFTFNID-VPNNSGPADGLAFVLLPVGSQPKDKGGLLGLFNNYKYDSNAHTVAVEFDTLYNVHW-DPKPRHIGIDV-----NSIKSIKTTTWDFVKGENAEVLITYDSSTKLLVASLVYPSLKTSFIVSDTVDLKSVLPEWVIVGFTATTGITKGNVETNDILSWSFASKLSDGTTSEALNL 266          
BLAST of DY258223 vs. ExPASy Swiss-Prot
Match: PHAM_PHAVU (Leucoagglutinating phytohemagglutinin OS=Phaseolus vulgaris GN=PDLEC2 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.253e-11
Identity = 58/205 (28.29%), Postives = 83/205 (40.49%), Query Frame = 2
Query:   86 VGRV*YSQPVTAWP------AMIKTTFTIRISPYSNTTDSADGMTFVFATNTTPPTDXXXXXXXXXXXXXXXXTM--ELDPYKNDYWSDPDANHMGIDIANLTSNPSKSLNSSGIDLKSGRPIHVHIYYDGWTKILYVYVAYAGNPLQKLIERPILLSETIPSSVYVGFTASTG--PDFSETHHVLDCTFTTFPLPSSSLEEQNL 670
            +GR  YS P+  W       A   T FT  I    N    ADG+ F      + P D                T+  E D   N  W DP   H+GID+     N  KS+ ++  D  +G    VHI Y+  TK+L   + Y        +   + L   +P  V VGF+A+TG      ET+ +L  +F +     ++ E  NL
Sbjct:   67 LGRAFYSAPIQIWDYTTGNVASFDTNFTFNIL-VPNNAGPADGLAFALVPVGSQPKDKGGFLGLFDGSNSNFHTVAVEFDTLYNKDW-DPRERHIGIDV-----NSIKSIKTTPWDFVNGENAEVHITYESSTKLLVASLVYPSLKTSFTVSDTVDLKSVLPEWVSVGFSATTGITKGNVETNDILSWSFASKLSDGTTSEGLNL 264          
The following BLAST results are available for this feature:
BLAST of DY258223 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
LEC1_MEDTR3.846e-1228.77Lectin 1 OS=Medicago truncatula GN=LEC1 PE=3 SV=1[more]
LECS_VATMA6.560e-1228.44Seed lectin OS=Vatairea macrocarpa PE=1 SV=1[more]
PHAE_PHAVU1.119e-1128.57Erythroagglutinating phytohemagglutinin OS=Phaseol... [more]
PHAM_PHAVU7.253e-1128.29Leucoagglutinating phytohemagglutinin OS=Phaseolus... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB3CF10ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258223 ID=DY258223; Name=DY258223; organism=Citrus clementina; type=EST; length=884bp
GGGCGCAATGACTACCTTTTATGGTTACTTGTTCCTCACATCAGACCCTT
CACCACAATTTTAAGATCACCTGCCGCTAAAAAAGGTTGGACGGGTTTAA
TACAGCCAGCCTGTGACTGCATGGCCAGCTATGATTAAAACCACCTTCAC
CATTAGGATCTCACCCTACTCAAATACAACGGATTCTGCAGATGGCATGA
CGTTTGTTTTTGCAACCAATACCACCCCTCCAACTGATAACTCCGCCGGC
GGAAATCTTGGACTGAGTAACGGTGTTTCGCAATTAACCATGGAGCTGGA
CCCTTACAAGAACGACTACTGGTCTGATCCAGATGCTAACCATATGGGCA
TTGACATAGCAAACTTAACATCGAATCCATCCAAGAGTCTCAACAGCTCT
GGTATTGATCTAAAAAGTGGAAGACCTATCCATGTTCACATTTATTACGA
CGGATGGACGAAAATACTCTATGTTTATGTGGCATATGCGGGGAACCCAC
TTCAAAAGCTTATTGAAAGACCTATCCTCTTGTCAGAAACAATTCCAAGC
TCAGTCTATGTTGGCTTCACAGCATCCACAGGGCCCGACTTTTCAGAAAC
CCATCACGTGCTTGATTGTACCTTCACAACGTTCCCATTGCCTTCTTCTT
CTCTGGAGGAGCAAAACCTGGAGATGCCAATATAATTCCAAACCGTCCTT
GATAAACCATGTCACATAAAACATTATAATAAAATAAAAAATAACTAATA
TCGTCCCTAAAGTGACATGGCTCTCGAACCTGACTAAGATTAATATTGTT
GGCTTGCTATCTGAAATGTTCTGCATGTACTTGTTGTACAAATGTTCAAA
TTCCTCTTCTATTGATTACGTTGCAGCTTTAAAC
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