DY258235

Overview
NameDY258235
Unique NameDY258235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length955
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14593 contig Ccv1_Contig14593:51..1005. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258235 vs. ExPASy Swiss-Prot
Match: DHAR1_ARATH (Glutathione S-transferase DHAR1, mitochondrial OS=Arabidopsis thaliana GN=DHAR1 PE=1 SV=1)

HSP 1 Score: 337.035 bits (863), Expect = 9.413e-92
Identity = 161/212 (75.94%), Postives = 183/212 (86.32%), Query Frame = 1
Query:   61 MAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSLTNPPEFASVGSKIFPSFVNFLKSKDPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKTKAEKQYVIAGWVPKVN 696
            MA+EICVKAAVGAPD LGDCPFSQRALLTLEEK + YK HLIN+SDKPQWFL+ISP+GKVPV+K DDKWV DSDVIV I+EEKYP+P L  P EFASVGS IF +F  FLKSKD NDG+E ALL EL+AL+ HLK+H GPFIAGE+V+AVDLSLAPKLYHLQVAL HFK W+VPES  HVH Y K LF+L+SF+KTK E++YVI+GW PKVN
Sbjct:    1 MALEICVKAAVGAPDHLGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEEKYPDPPLKTPAEFASVGSNIFGTFGTFLKSKDSNDGSEHALLVELEALENHLKSHDGPFIAGERVSAVDLSLAPKLYHLQVALGHFKSWSVPESFPHVHNYMKTLFSLDSFEKTKTEEKYVISGWAPKVN 212          
BLAST of DY258235 vs. ExPASy Swiss-Prot
Match: CLIC1_HUMAN (Chloride intracellular channel protein 1 OS=Homo sapiens GN=CLIC1 PE=1 SV=4)

HSP 1 Score: 92.4337 bits (228), Expect = 4.038e-18
Identity = 63/217 (29.03%), Postives = 106/217 (48.85%), Query Frame = 1
Query:   67 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEE-----KYPEPSLTNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 648
            VE+ VKA      I G+CPFSQR  + L  K V +    ++   + +   ++ P G++P + +  +   D++ I   +E      +YP+ +  NP E  + G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  + ++ +T+PE+   VH Y    +A E F  T
Sbjct:    8 VELFVKAGSDGAKI-GNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNP-ESNTAGLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGVSQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFAST 222          
BLAST of DY258235 vs. ExPASy Swiss-Prot
Match: CLIC1_RAT (Chloride intracellular channel protein 1 OS=Rattus norvegicus GN=Clic1 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.888e-18
Identity = 63/217 (29.03%), Postives = 105/217 (48.39%), Query Frame = 1
Query:   67 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEE-----KYPEPSLTNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 648
            VE+ VKA      I G+CPFSQR  + L  K V +    ++   + +   ++ P G++P + +  +   D++ I   +E      +YP+ +  NP    S G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  + ++ +T+PE+   VH Y    +A E F  T
Sbjct:    8 VELFVKAGSDGAKI-GNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTS-GLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFAST 222          
BLAST of DY258235 vs. ExPASy Swiss-Prot
Match: CLIC1_MOUSE (Chloride intracellular channel protein 1 OS=Mus musculus GN=Clic1 PE=1 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 6.888e-18
Identity = 63/217 (29.03%), Postives = 105/217 (48.39%), Query Frame = 1
Query:   67 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEE-----KYPEPSLTNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 648
            VE+ VKA      I G+CPFSQR  + L  K V +    ++   + +   ++ P G++P + +  +   D++ I   +E      +YP+ +  NP    S G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  + ++ +T+PE+   VH Y    +A E F  T
Sbjct:    8 VELFVKAGSDGAKI-GNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAMLCPPRYPKLAALNPESNTS-GLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFAST 222          
BLAST of DY258235 vs. ExPASy Swiss-Prot
Match: CLIC1_BOVIN (Chloride intracellular channel protein 1 OS=Bos taurus GN=CLIC1 PE=2 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 3.418e-17
Identity = 61/217 (28.11%), Postives = 106/217 (48.85%), Query Frame = 1
Query:   67 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEE-----KYPEPSLTNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 648
            VE+ VKA      I G+CPFSQR  + L  K V +    ++   + +   ++ P G++P + +  +   D++ I   +E      +YP+ +  NP E  + G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  + ++ +++P+    VH Y +  +A E F  T
Sbjct:    8 VELFVKAGSDGAKI-GNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNP-ESNTAGLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVLDNYLTSPLPDEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFSIPDVFRGVHRYLRNAYAREEFAST 222          
BLAST of DY258235 vs. ExPASy Swiss-Prot
Match: CLIC1_RABIT (Chloride intracellular channel protein 1 OS=Oryctolagus cuniculus GN=CLIC1 PE=2 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 7.615e-17
Identity = 63/217 (29.03%), Postives = 104/217 (47.93%), Query Frame = 1
Query:   67 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEE-----KYPEPSLTNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 648
            VE+ VKA      I G+CPFSQR  + L  K V +    ++   + +   ++ P G++P + +  +   D++ I   +E      +YP+ +  NP E  + G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  +  + +T+PE    VH Y    +A E F  T
Sbjct:    8 VELFVKAGSDGAKI-GNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVHKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNP-ESNTAGVDIFAKFSAYIKNSNPALNDNLEKGLLKALKILDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKNRGFTIPEVFRGVHRYLSNAYAREEFAST 222          
BLAST of DY258235 vs. ExPASy Swiss-Prot
Match: CLIC6_HUMAN (Chloride intracellular channel protein 6 OS=Homo sapiens GN=CLIC6 PE=2 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 1.697e-16
Identity = 58/220 (26.36%), Postives = 104/220 (47.27%), Query Frame = 1
Query:   55 AKMAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSL----TNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 648
            +++A++  ++A      I G+CPFSQR  + L  K V +    +++  KP     ++P    P + FD +   D + I   +EEK   P      T  PE  S G+ +F  F  F+K+  KD N+  E+ LL+ L+ LD +L +                 G  F+ G+++T  D +L PKL+ +++  + ++ +  P  +  +  Y    +A + F  T
Sbjct:  467 SRIAIKKYLRAGYDGESI-GNCPFSQRLFMILWLKGVIFNVTTVDLKRKPADLQNLAPGTNPPFMTFDGEVKTDVNKIEEFLEEKLAPPRYPKLGTQHPESNSAGNDVFAKFSAFIKNTKKDANEIHEKNLLKALRKLDNYLNSPLPDEIDAYSTEDVTVSGRKFLDGDELTLADCNLLPKLHIIKIVAKKYRDFEFPSEMTGIWRYLNNAYARDEFTNT 685          
BLAST of DY258235 vs. ExPASy Swiss-Prot
Match: CLIC6_RABIT (Chloride intracellular channel protein 6 OS=Oryctolagus cuniculus GN=CLIC6 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.216e-16
Identity = 60/216 (27.78%), Postives = 99/216 (45.83%), Query Frame = 1
Query:   67 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPS----LTNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 648
            + + VKA      I G+CPFSQR  + L  K V +    +++  KP     ++P    P + FD     D + I   +EEK   P      T  PE  S G+ +F  F  F+K+  KD N+  E++LL+ LK LD +L +                 G  F+ G+ +T  D +L PKL+ +++  + ++ +  P  +  +  Y    +A + F  T
Sbjct:  404 ITLFVKAGYDGESI-GNCPFSQRLFMILWLKGVIFNVTTVDLKRKPADLQNLAPGTNPPFMTFDGDVKTDVNKIEEFLEEKLAPPRYPKLATQHPESNSAGNDVFAKFSAFIKNTKKDANEIYEKSLLKALKKLDAYLNSPLPDEVDAYSTEDVAVSGRKFLDGDDLTLADCNLLPKLHIIKIVAKKYRDFEFPPEMTGIWRYLNNAYARDEFINT 618          
BLAST of DY258235 vs. ExPASy Swiss-Prot
Match: CLIC6_RAT (Chloride intracellular channel protein 6 OS=Rattus norvegicus GN=Clic6 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.447e-16
Identity = 60/216 (27.78%), Postives = 98/216 (45.37%), Query Frame = 1
Query:   67 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSL----TNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 648
            + + VKA      I G+CPFSQR  + L  K V +    +++  KP     ++P    P + FD +   D + I   +EEK   P      T  PE  S G+ +F  F  F+K+  KD ND  E+ LL  LK LD +L +                    F+ G+++T  D +L PKL+ +++  + ++ +  P  +  +  Y    +A + F  T
Sbjct:  379 ITLFVKAGSDGESI-GNCPFSQRLFMILWLKGVIFNVTTVDLKRKPADLQNLAPGTNPPFMTFDGEVKTDVNKIEEFLEEKLVPPRYPKLGTQHPESNSAGNDVFAKFSAFIKNTKKDANDIYEKNLLRALKKLDSYLNSPLPDEIDAYSTEDVTVSQRKFLDGDELTLADCNLLPKLHIIKIVAKKYRGFEFPSEMTGIWRYLNNAYARDEFTNT 593          
BLAST of DY258235 vs. ExPASy Swiss-Prot
Match: CLIC6_MOUSE (Chloride intracellular channel protein 6 OS=Mus musculus GN=Clic6 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 8.420e-16
Identity = 59/216 (27.31%), Postives = 98/216 (45.37%), Query Frame = 1
Query:   67 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSL----TNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 648
            + + VKA      I G+CPFSQR  + L  K V +    +++  KP     ++P    P + FD +   D + I   +EEK   P      T  PE  S G+ +F  F  F+K+  KD N+  E+ LL  LK LD +L +                    F+ G+++T  D +L PKL+ +++  + ++ +  P  +  +  Y    +A + F  T
Sbjct:  363 ITLFVKAGYDGESI-GNCPFSQRLFMILWLKGVIFNVTTVDLKRKPADLQNLAPGTNPPFMTFDGEVKTDVNKIEEFLEEKLVPPRYPKLGTQHPESNSAGNDVFAKFSAFIKNTKKDANEIYEKNLLRALKKLDSYLNSPLPDEIDADSSEDVTVSQRKFLDGDELTLADCNLLPKLHIIKIVAKKYRDFEFPSEMTGIWRYLNNAYARDEFTNT 577          
The following BLAST results are available for this feature:
BLAST of DY258235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
DHAR1_ARATH9.413e-9275.94Glutathione S-transferase DHAR1, mitochondrial OS=... [more]
CLIC1_HUMAN4.038e-1829.03Chloride intracellular channel protein 1 OS=Homo s... [more]
CLIC1_RAT6.888e-1829.03Chloride intracellular channel protein 1 OS=Rattus... [more]
CLIC1_MOUSE6.888e-1829.03Chloride intracellular channel protein 1 OS=Mus mu... [more]
CLIC1_BOVIN3.418e-1728.11Chloride intracellular channel protein 1 OS=Bos ta... [more]
CLIC1_RABIT7.615e-1729.03Chloride intracellular channel protein 1 OS=Orycto... [more]
CLIC6_HUMAN1.697e-1626.36Chloride intracellular channel protein 6 OS=Homo s... [more]
CLIC6_RABIT2.216e-1627.78Chloride intracellular channel protein 6 OS=Orycto... [more]
CLIC6_RAT6.447e-1627.78Chloride intracellular channel protein 6 OS=Rattus... [more]
CLIC6_MOUSE8.420e-1627.31Chloride intracellular channel protein 6 OS=Mus mu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3CH08ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258235 ID=DY258235; Name=DY258235; organism=Citrus clementina; type=EST; length=955bp
GGTTGTCGGGTTTTCACTAACAGCAACATACACTCTCTCTGATCACTCAA
TTCCGCAAAAATGGCCGTGGAGATTTGTGTGAAAGCCGCTGTTGGCGCTC
CTGATATTCTCGGGGACTGCCCATTTTCCCAAAGAGCTTTGCTTACTTTG
GAGGAAAAGAAAGTTCCATACAAGCGTCACCTCATCAATATCAGTGACAA
GCCTCAATGGTTTTTGGAGATAAGCCCAGAAGGGAAAGTACCTGTGGTAA
AGTTTGATGACAAGTGGGTGGCTGACTCTGATGTGATTGTTAGAATTATT
GAGGAGAAGTATCCTGAGCCTTCTCTTACTAATCCTCCTGAATTTGCCTC
TGTTGGATCAAAGATATTCCCATCTTTTGTCAATTTCTTGAAGAGCAAGG
ACCCAAATGATGGGACAGAGCAAGCTTTGCTGGAGGAATTGAAAGCATTG
GATGAGCATCTTAAGACTCATGGAGGTCCATTCATTGCTGGAGAGAAGGT
CACTGCTGTAGATTTGAGCTTGGCACCAAAGCTGTACCACCTTCAGGTAG
CTCTTGAACATTTCAAGCAGTGGACTGTCCCTGAGAGCTTGGCTCATGTC
CATGGGTACACGAAGAAGCTTTTTGCTCTGGAATCCTTTCAGAAGACTAA
GGCTGAAAAGCAATACGTGATTGCAGGATGGGTGCCGAAGGTCAATGCAT
GAACTGGTTCTAAGCTATGCGGTGTTTGAAATCTAGCTAATGAAATGCGA
GTAATGTATGTGTGAGACTTGGAGCATAATTAGAATGTTCACTGGGGGTT
TGTATCATCCAATAAAGGTGGCTACGATGATATTTGCTATTTGTTATAAT
GAAACCTCCTGGTTGGATGGTATTTACTCTTAGTTCCTGGATATCTCCTA
CGGGGTATAAAATGGGTTAAATCCCTTGGGATTTTGTCAAATCCCAGGTC
CCATT
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