DY258239

Overview
NameDY258239
Unique NameDY258239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10087 contig Ccv1_Contig10087:4..590. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB2_ANASP (Chaperone protein clpB 2 OS=Anabaena sp. (strain PCC 7120) GN=clpB2 PE=3 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 5.367e-28
Identity = 55/117 (47.01%), Postives = 85/117 (72.65%), Query Frame = 3
Query:    3 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFSNGQLP 353
            +A R+ FRPEF+NR+DE I+F  LD+ ++  IV+LQ++R++ R+ DRK+ ++++D A+  L  +GYDP +G RP+KR IQ+ +E ++AK ILRGEF D DTI +D +    S  +LP
Sbjct:  750 EAMRNSFRPEFLNRIDEVIIFHSLDKKELRQIVQLQVERLKARLDDRKISLRLSDVALDFLAEVGYDPVFGARPLKRAIQRELETQIAKAILRGEFNDGDTIFVDVQNERLSFSRLP 866          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_GLOVI (Chaperone protein clpB OS=Gloeobacter violaceus GN=clpB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.040e-27
Identity = 59/120 (49.17%), Postives = 87/120 (72.50%), Query Frame = 3
Query:   21 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFSNGQLPQQKLVFRRL 380
            FRPEF+NRVD+ I+F+ L RDQ+++IV+LQ+ R++KR+ADRK+ +++++AAI  +   GYDP YG RP+KR IQ  + N LA+G+L+G+F D DTI +D E           ++ VFRRL
Sbjct:  757 FRPEFLNRVDDIIIFRNLRRDQLAAIVKLQIARLEKRLADRKITLKLSEAAIDYIVEAGYDPVYGARPLKRAIQNELVNPLARGLLKGDFNDGDTIFVDIE----------NERPVFRRL 866          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB1_THEEB (Chaperone protein clpB 1 OS=Thermosynechococcus elongatus (strain BP-1) GN=clpB1 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.664e-27
Identity = 55/105 (52.38%), Postives = 80/105 (76.19%), Query Frame = 3
Query:    3 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 317
            +A R+ FRPEF+NRVDE+I+F  L +DQ+  IV+LQ+ R+Q+R++DR + + +T+ AI  L  +GYDP YG RP+KR IQ+ +E  +AK ILRG+F D DTI++D
Sbjct:  749 EAMRAHFRPEFLNRVDEFIIFHSLRKDQLRQIVQLQVQRLQQRLSDRHITLSLTEKAIDFLAEVGYDPVYGARPLKRAIQKQLETPIAKAILRGDFFDGDTILVD 853          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB1_SYNE7 (Chaperone protein clpB 1 OS=Synechococcus elongatus (strain PCC 7942) GN=clpB1 PE=2 SV=3)

HSP 1 Score: 119.783 bits (299), Expect = 1.012e-26
Identity = 59/128 (46.09%), Postives = 87/128 (67.97%), Query Frame = 3
Query:    3 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFSNGQLPQQKLVFRRLDT 386
            +A R+ FRPEF+NRVDE I+F  L +DQ+  IVR+QL R+++R++DRK+ + ++  AI  L  +G+DP YG RP+KRVIQ+ +E  +AK ILRG+F D DTI +  E           ++LVF+ + T
Sbjct:  750 EALRANFRPEFLNRVDETIIFHSLRKDQLQQIVRIQLHRLEERLSDRKLSLSMSPEAIDFLVEIGFDPVYGARPLKRVIQRELETAIAKAILRGQFSDGDTIQVAVE----------NERLVFKAIAT 867          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_XANCP (Chaperone protein clpB OS=Xanthomonas campestris pv. campestris GN=clpB PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.024e-26
Identity = 53/101 (52.48%), Postives = 77/101 (76.24%), Query Frame = 3
Query:   21 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 323
            FRPEF+NR+D+ +VF PLD+ QI SI R+QL  ++KR+A+R +K+ + D A++LLG++G+DP YG RP+KR IQ  VEN LA+ IL G++   DT+ + TE
Sbjct:  752 FRPEFINRLDDIVVFHPLDKAQIKSIARIQLQGLEKRLAERGLKLDLDDPALELLGNVGFDPVYGARPLKRAIQSQVENPLAQQILSGQYTSGDTVRVRTE 852          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB2_SYNY3 (Chaperone protein clpB 2 OS=Synechocystis sp. (strain PCC 6803) GN=clpB2 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.119e-25
Identity = 50/105 (47.62%), Postives = 78/105 (74.29%), Query Frame = 3
Query:    3 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 317
            D  R  FRPEF+NRVDE I+F  L + ++ SIV++Q+  +  R+ ++K+ +++TD A+  L ++GYDP YG RP+KR +Q+Y+E  +AKGILRG++K  +TIV+D
Sbjct:  750 DVMRENFRPEFLNRVDETIIFHGLQKSELRSIVQIQIQSLATRLEEQKLTLKLTDKALDFLAAVGYDPVYGARPLKRAVQKYLETAIAKGILRGDYKPGETIVVD 854          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_XANAC (Chaperone protein clpB OS=Xanthomonas axonopodis pv. citri GN=clpB PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 4.253e-25
Identity = 51/96 (53.12%), Postives = 75/96 (78.12%), Query Frame = 3
Query:   21 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTI 308
            FRPEF+NR+D+ +VF PLD+ QI SI R+QL  ++KR+A+R +K+ + DAA+++LGS+G+DP YG RP+KR IQ  VEN LA+ IL G++   D++
Sbjct:  752 FRPEFINRLDDIVVFHPLDKAQIKSIARIQLQGLEKRLAERGLKLDLDDAALEVLGSVGFDPVYGARPLKRAIQSQVENPLAQQILSGQYLSGDSV 847          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_COREF (Chaperone protein clpB OS=Corynebacterium efficiens GN=clpB PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.757e-24
Identity = 47/105 (44.76%), Postives = 80/105 (76.19%), Query Frame = 3
Query:    3 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 317
            DA +  F+PEF+NR+D+ +VF PL ++Q++SIV +Q+ ++ +R++DR++ ++V+DAA   L   GYDP YG RP++R+IQQ + ++LAK +L GE +D D +++D
Sbjct:  734 DAVKMAFKPEFINRLDDIVVFDPLSQEQLASIVEIQISQLAERLSDRRLTLRVSDAAKLWLAERGYDPAYGARPLRRLIQQAIGDQLAKELLAGEIRDGDRVLVD 838          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_XYLFT (Chaperone protein clpB OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=clpB PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.021e-24
Identity = 49/101 (48.51%), Postives = 74/101 (73.27%), Query Frame = 3
Query:   21 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 323
            FRPEF+NR+D+ +VF PLD+ QI  I R+QL  ++KR+A+ ++K+ + D A++LLG++G+DP YG RP+KR IQ  +EN LA+ IL G F   DT+ +  +
Sbjct:  752 FRPEFINRLDDIVVFHPLDKAQIKQIARIQLRGLEKRLAESELKLDLDDRALELLGNVGFDPVYGARPLKRAIQSQLENALAQQILAGAFVSGDTVQVGVD 852          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_PSESM (Chaperone protein clpB OS=Pseudomonas syringae pv. tomato GN=clpB PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.048e-23
Identity = 53/111 (47.75%), Postives = 81/111 (72.97%), Query Frame = 3
Query:    3 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTI---VIDTEV 326
            DA  + FRPEF+NR+DE ++F+PL RDQI+ I  +QL R++KR+A+R++ M ++  A+  L ++GYDP YG RP+KR IQ+++EN LA+ IL G F+   +I   V+D E+
Sbjct:  741 DAVSTHFRPEFVNRIDEVVIFEPLARDQIAGITDIQLGRLRKRLAERELTMVLSPEALDKLIAVGYDPVYGARPLKRAIQRWIENPLAQLILSGGFEPGSSITGKVVDDEI 851          
The following BLAST results are available for this feature:
BLAST of DY258239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
CLPB2_ANASP5.367e-2847.01Chaperone protein clpB 2 OS=Anabaena sp. (strain P... [more]
CLPB_GLOVI2.040e-2749.17Chaperone protein clpB OS=Gloeobacter violaceus GN... [more]
CLPB1_THEEB2.664e-2752.38Chaperone protein clpB 1 OS=Thermosynechococcus el... [more]
CLPB1_SYNE71.012e-2646.09Chaperone protein clpB 1 OS=Synechococcus elongatu... [more]
CLPB_XANCP5.024e-2652.48Chaperone protein clpB OS=Xanthomonas campestris p... [more]
CLPB2_SYNY31.119e-2547.62Chaperone protein clpB 2 OS=Synechocystis sp. (str... [more]
CLPB_XANAC4.253e-2553.13Chaperone protein clpB OS=Xanthomonas axonopodis p... [more]
CLPB_COREF2.757e-2444.76Chaperone protein clpB OS=Corynebacterium efficien... [more]
CLPB_XYLFT8.021e-2448.51Chaperone protein clpB OS=Xylella fastidiosa (stra... [more]
CLPB_PSESM1.048e-2347.75Chaperone protein clpB OS=Pseudomonas syringae pv.... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DA11ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258239 ID=DY258239; Name=DY258239; organism=Citrus clementina; type=EST; length=587bp
TGGATGCTGCAAGATCAATATTCCGCCCCGAGTTCATGAACCGAGTAGAT
GAGTATATAGTATTCCAACCACTGGACCGTGACCAGATAAGCAGTATTGT
GAGGTTACAGTTGGATCGGGTGCAGAAGAGGATTGCAGACCGGAAGATGA
AAATGCAAGTGACCGATGCAGCTATTCAGCTCCTTGGGAGTCTTGGGTAT
GACCCCAACTATGGTGGAAGGCCGGTCAAGAGAGTGATTCAGCAGTACGT
TGAAAATGAGCTTGCCAAGGGCATTCTGAGAGGGGAGTTCAAGGATGAAG
ACACAATTGTAATAGACACTGAAGTTACAGCATTTTCCAATGGCCAGCTT
CCGCAGCAAAAGCTAGTCTTCAGGAGACTTGATACCAGTTCGGATGCTTC
TGCTGCAGATAACCAAGAAGCTTTCTCACAGACAGCATAAATGTCTGTCC
AATGTGTTTAATTTTACCAAATTATATTTGTGTTCAGCAAAATTATGAGC
GAATTTTCTTAACTGATAGGCTGTAACCTGCTTCTTGTATATGATGATGC
TTTATACAAAATCATAAGCCTTGAAGAGTTTCTTTTT
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